ViewGene
Locus Name:
GeneID:
Location:

GeneID:978
TrivialName: PA14_03860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03860
PAO1 Ortholog Locus:PA0296
Sequence Length:1377
Protein Length:458
Start: 348580
Stop: 347204
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03685.1|AE004467_7 (AE004467) probable glutamine synthetase [Pseudomonas aeruginosa PAO1]
Identities = 458/458 (100%), Positives = 458/458 (100%)
Sequence:
ATGTCGGTACCCCAGCGTGCCGTTCAGCTCACTGAACCGAGCGAGTTCCTCAAGGAACATCCCGAGGTCCAG
TTCGTCGACCTCCTTATTGCAGACATGAATGGCGTGGTTCGCGGCAAGCGGATCGAACGCAACAGTCTGAAC
AAAGTCTTCGAAAAAGGTATCAATCTCCCCGCTTCCCTGTTCGCCCTCGATATCACCGGCTCCACCGTAGAG
AGTACCGGCCTGGGTCTCGACATCGGCGACGCCGACCGGATCTGCTACCCGATCCCCGGCACCCTCTCCATG
GAACCCTGGCAGAAGCGCCCGACCGCGCAACTGCTGATGACCATGCACGAACTGGAAGGCGAGCCGTTCTTC
GCCGACCCCCGCGAAGTCCTGCGCCAGGTGGTGGCCAGGTTCACCGAGATGGAACTGACCATCGTCGCCGCA
TTCGAGCTGGAGTTCTACCTGATCGACCAGGAGAACGTGAACGGCCGGCCGCAGCCGCCACGCTCGCCGATC
TCCGGCAAGCGTCCGCAGTCGGTGCAGGTGTACTCCATCGACGACCTCGACGAATACGTCGAGTGCCTCCAG
GACATCATCGACGGCGCCCGCGCCCAGGGCATCCCGGCCGACGCCATCGTCGCCGAATCCGCACCGGCGCAG
TTCGAGGTCAACCTCAACCACGTCAACGACGCCCTCAAGGCCTGCGACCACGCGGTGCTGCTCAAGCGCCTG
GTCAAGAACATCGCCTACGACCACGAGATGGACACCACCTTCATGGCCAAGCCCTATCCGGGCCAGGCCGGG
AACGGACTGCACGTGCATATCTCGCTGCTCGACAAGCACGGCAACAACATCTTCACCAGCGAGGATCCCGAG
CAGAACGCCGCATTGCGCCATGCGATCGGCGGTGTGCTCGAGACCCTGCCGGCCTCCATGGCCTTCCTCTGC
CCGAACGTCAACTCCTACCGCCGCTTCGGTTCGCAGTTCTACGTGCCGAACGCGCCGAGCTGGGGCCTGGAC
AACCGCACCGTGGCCCTGCGCGTGCCCACCGGCAGCCCGGACGCGGTACGCCTGGAACACCGCGTGGCCGGC
GCCGACGCCAACCCCTACCTGCTACTGGCAGCGGTGCTGGCAGGCGTTCATCACGGGCTGACCAACAAGGTC
GAGCCGGGCGCGCCGATCGAAGGCAACTCCTACGAGCAGATGGAGCCGAGCCTGCCGAACAACCTGCGCGAC
GCCCTGCGCGAGCTGGACGAAAGCGAGATCATGGCGAAGTACATCGACCCGAAGTACATCGACATCTTCGTC
GCCTGCAAGGAAAGCGAGCTGGAGGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT
ACCGTCTGA
Translation:
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVE
STGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAA
FELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQ
FEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPE
QNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAG
ADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFV
ACKESELEEFEHSISDLEYNWYLHTV*
AnnotationID:987GeneID:978
AnnotatorUID: danlee
Modification Date/Time: 2005-09-27 17:05:05
Gene Name:
Confidence Code:3
GeneProduct:putative glutamine synthetase
Cell Localization:()
Synonyms:PA0296
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00120
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70749.1|AE016718_8 (AE016793) glutamine synthetase, putative [Pseudomonas putida
           KT2440]
          Length = 458

 Score =  839 bits (2167), Expect = 0.0
 Identities = 410/458 (89%), Positives = 433/458 (94%)

>gb|AAO58736.1| (AE016875) glutamine synthetase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 458

 Score =  827 bits (2136), Expect = 0.0
 Identities = 401/458 (87%), Positives = 431/458 (94%)








 
Structural Features:
pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
CD-Length = 260 residues,  99.6% aligned
Score =  258 bits (661), Expect = 8e-70
Identities = 99/263 (37%), Positives = 136/263 (51%), Gaps = 7/263 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1959




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19101




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33647




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:978_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:978
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1747
                           PA0296_tr
                           translation of PA0296
                           458
                           99.99
                           99.99
                           0
                           2386.0
     

     
     
61731
                           gb|AAG03685.1|AE004467_7
                           (AE004467) probable glutamine synthetase [Pseudomonas aeruginosa PAO1]
                           458
                           99.99
                           99.99
                           0
                           2386.0
     

     
     
1748
                           PA2040_tr
                           translation of PA2040
                           458
                           96.50
                           98.90
                           0
                           2311.0
     

     
     
61732
                           gb|AAG05428.1|AE004630_5
                           (AE004630) probable glutamine synthetase [Pseudomonas aeruginosa PAO1]
                           458
                           96.50
                           98.90
                           0
                           2311.0
     

     
     
61733
                           gb|AAN70749.1|AE016718_8
                           (AE016793) glutamine synthetase, putative [Pseudomonas putida KT2440]
                           458
                           89.51
                           94.54
                           0
                           2167.0
     

     






      

          
GC ORFID: 43980How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0296Glimmer Score: 

          
Start: 6149922Stop: 6148546

          
Length: 1377


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0296 translation of PA0296Homolog Bit Score 923.0

          
Other Homologs:  t_PA2040 (ORF: BLASTX 894.0), psyr_15may02_Scaffold6_revised_gene6921 (ORF: BLASTX 827.0), t_PA5522 (ORF: BLASTX 385.0), t_PA1566 (ORF: BLASTX 377.0), t_PA0296 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGTACCCCAGCGTGCCGTTCAGCTCACTGAACCGAGCGAGTTCCTCAAGGAACATCCCGAGGTCCAG 
TTCGTCGACCTCCTTATTGCAGACATGAATGGCGTGGTTCGCGGCAAGCGGATCGAACGCAACAGTCTGAAC 
AAAGTCTTCGAAAAAGGTATCAATCTCCCCGCTTCCCTGTTCGCCCTCGATATCACCGGCTCCACCGTAGAG 
AGTACCGGCCTGGGTCTCGACATCGGCGACGCCGACCGGATCTGCTACCCGATCCCCGGCACCCTCTCCATG 
GAACCCTGGCAGAAGCGCCCGACCGCGCAACTGCTGATGACCATGCACGAACTGGAAGGCGAGCCGTTCTTC 
GCCGACCCCCGCGAAGTCCTGCGCCAGGTGGTGGCCAGGTTCACCGAGATGGAACTGACCATCGTCGCCGCA 
TTCGAGCTGGAGTTCTACCTGATCGACCAGGAGAACGTGAACGGCCGGCCGCAGCCGCCACGCTCGCCGATC 
TCCGGCAAGCGTCCGCAGTCGGTGCAGGTGTACTCCATCGACGACCTCGACGAATACGTCGAGTGCCTCCAG 
GACATCATCGACGGCGCCCGCGCCCAGGGCATCCCGGCCGACGCCATCGTCGCCGAATCCGCACCGGCGCAG 
TTCGAGGTCAACCTCAACCACGTCAACGACGCCCTCAAGGCCTGCGACCACGCGGTGCTGCTCAAGCGCCTG 
GTCAAGAACATCGCCTACGACCACGAGATGGACACCACCTTCATGGCCAAGCCCTATCCGGGCCAGGCCGGG 
AACGGACTGCACGTGCATATCTCGCTGCTCGACAAGCACGGCAACAACATCTTCACCAGCGAGGATCCCGAG 
CAGAACGCCGCATTGCGCCATGCGATCGGCGGTGTGCTCGAGACCCTGCCGGCCTCCATGGCCTTCCTCTGC 
CCGAACGTCAACTCCTACCGCCGCTTCGGTTCGCAGTTCTACGTGCCGAACGCGCCGAGCTGGGGCCTGGAC 
AACCGCACCGTGGCCCTGCGCGTGCCCACCGGCAGCCCGGACGCGGTACGCCTGGAACACCGCGTGGCCGGC 
GCCGACGCCAACCCCTACCTGCTACTGGCAGCGGTGCTGGCAGGCGTTCATCACGGGCTGACCAACAAGGTC 
GAGCCGGGCGCGCCGATCGAAGGCAACTCCTACGAGCAGATGGAGCCGAGCCTGCCGAACAACCTGCGCGAC 
GCCCTGCGCGAGCTGGACGAAAGCGAGATCATGGCGAAGTACATCGACCCGAAGTACATCGACATCTTCGTC 
GCCTGCAAGGAAAGCGAGCTGGAGGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT 
ACCGTCTGA