ViewGene

Locus Name:
GeneID:
Location:

GeneID:975
TrivialName: PA14_27000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27000
PAO1 Ortholog Locus:PA2867
Sequence Length:1473
Protein Length:490
Start: 2349773
Stop: 2348301
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06255.1|AE004713_4 (AE004713) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 490/490 (100%), Positives = 490/490 (100%)
Sequence:
ATGGGCACCTGGATCAGCGACATTCCACTGAAATACAAGTTCTGGGCCGTCAACGCGGTGGCCTTCTTCACC
ACCCTGCTGCTGGTGTTGTTCGCCATGCAGCAGGAAGCCGCCGGGCGCAACGCTTCCGCCCAGCGCGCCGCC
GCCGCCGAGGGCGAGCTGGTTCAGAGCTGGCCGGCCGGCAGCGCCCTGCCCGCCCGCAGCAACCTGCTGCCG
CTGGAACAGGCCGCGAGCCTGGGCGGCACCGCTGCCCAGGCGCTGGGCAAGGGGCAGGGTTGGATCGAGTTG
TCCGGCGCGCGCCAGGGCGATACCCCGCTGCTCGGCGCCTGGGTCGGCCAGACCGGCTCCGGCCAGCGCTTC
GCCGTGCTTGCCCCGGCCAGCGACCTGTGGCAGGTCTTCGCCGACCGGGCCGGCGCTTACGCCGTCGCCGTG
CTGGTGCTGATGCTGGCGCTGCTGGCGGCCTCGCAACTGCTGATCCGCTTCATCCTCACCCACCTGCATACC
CTCAAGGACGTGATGCTGCACGTCGAAAAGAGCGGCGACCTGTCCGCTCGCGTACCGCTGCAGGGACGCGAC
GAAGTCGGCCAGATGGCCAGCGCCTTCAACGCCATGCAGGCCGGCTACCAGCGCATCGTCGGCACCGTCGCC
GCGGCCGCTACCAAGCTCGACGAAGGCGCCCAGGCGCTGGCCCGCAGCATGGGCCAGGTACGCCAGGGCATG
CTCGGCCAGCAGAGCGAGACCGACCAGACCGCCACCGCGATCAACGAAATGTCCACCACGGTCTTCCATATC
GCCCAGCACGCCGCCGATACCCGTGACCAGTCGCAGGAAGCCGACCGCCTGGCCGGCGCCGGCCAGCAGGCG
GTGAGCCGGGTCAGCGCGTCGATCGCCGGGTTGTCCCAGGGCGTCCAGGACACCGCCGAGATGATCCAGAAG
CTGGCCGAGGACAGCCAGAAGATCAGCGGCGTGGTCAACGTGATCCACGGCATCGCCGAACAGACCAACCTG
CTTGCCCTCAACGCCGCCATCGAGGCCGCGCGGGCCGGGGAAATGGGCCGCGGCTTCGCCGTTGTGGCCGAT
GAGGTGCGCAACCTCGCCCGTCGCGTGCAGGACTCCACCGACGAGATCACCCAGATGATCCTCGCCTTGCAG
TCGGGCACCCGCGACGCCGTGGAGTTCATGCAGGAAAGCTCGCTCAAGGCAGACGGTTGCGTCAGCCAGGCC
GGCGACGCCGGCGAGGCGCTGGCGGCGATCGCCAACGCGGTGGCGCAGATGCGTGAAAGCAACACGCAGATC
GCCGTCGCCGCCGAACAGCAGAGCCAGGTCGCGGAAGAGATGACCCGTTCGGTGGTGGGCATCCGCGACGTC
ACCGAACTCACCGTGCAGCAGACCGTCGAGTCGGCGGCCACCAGTCAGCAACTGGTCGACCTGGCGGGCGAT
CTGACCCGCGCCATCGGCCAGCTACGCCTCTGA
Translation:
MGTWISDIPLKYKFWAVNAVAFFTTLLLVLFAMQQEAAGRNASAQRAAAAEGELVQSWPAGSALPARSNLLP
LEQAASLGGTAAQALGKGQGWIELSGARQGDTPLLGAWVGQTGSGQRFAVLAPASDLWQVFADRAGAYAVAV
LVLMLALLAASQLLIRFILTHLHTLKDVMLHVEKSGDLSARVPLQGRDEVGQMASAFNAMQAGYQRIVGTVA
AAATKLDEGAQALARSMGQVRQGMLGQQSETDQTATAINEMSTTVFHIAQHAADTRDQSQEADRLAGAGQQA
VSRVSASIAGLSQGVQDTAEMIQKLAEDSQKISGVVNVIHGIAEQTNLLALNAAIEAARAGEMGRGFAVVAD
EVRNLARRVQDSTDEITQMILALQSGTRDAVEFMQESSLKADGCVSQAGDAGEALAAIANAVAQMRESNTQI
AVAAEQQSQVAEEMTRSVVGIRDVTELTVQQTVESAATSQQLVDLAGDLTRAIGQLRL*
AnnotationID:984GeneID:975
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:35
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis protein
Cell Localization:()
Synonyms:PA2867
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67923.1|AE016424_9 (AE016782) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 492

 Score =  614 bits (1584), Expect = e-175
 Identities = 340/493 (68%), Positives = 385/493 (78%), Gaps = 4/493 (0%)

>gb|AAO55769.1| (AE016863) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 491

 Score =  609 bits (1571), Expect = e-173
 Identities = 335/492 (68%), Positives = 378/492 (76%), Gaps = 3/492 (0%)
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).

Genomic Context:
Comment:
ReferenceID:1953
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19095
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36177
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:975_cdd.html
URL:
Homologs By Global Alignment
Gene ID:975

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1739 PA2867_tr translation of PA2867 490 99.99 99.99 0 2385.0
61491 gb|AAG06255.1|AE004713_4 (AE004713) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1] 490 99.99 99.99 0 2385.0
61492 gb|AAN67923.1|AE016424_9 (AE016782) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440] 493 68.96 78.09 4 1590.0
61493 gb|AAO55769.1| (AE016863) methyl-accepting chemotaxis protein [Pseudomonas syringae pv. tomato str. DC3000] 492 68.08 76.82 3 1575.0
61494 dbj|BAC41691.1| (AB088420) putative methyl-accepting chemotaxis protein [Pseudomonas resinovorans] 563 34.10 48.13 84 644.0
GC ORFID: 43977How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2867Glimmer Score:
Start: 2604153Stop: 2605625
Length: 1473
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2867 translation of PA2867Homolog Bit Score 923.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene392 (ORF: BLASTX 593.0), t_PA2867 (ORF: GLIMMER)
GC ORF Sequence
ATGGGCACCTGGATCAGCGACATTCCACTGAAATACAAGTTCTGGGCCGTCAACGCGGTGGCCTTCTTCACC
ACCCTGCTGCTGGTGTTGTTCGCCATGCAGCAGGAAGCCGCCGGGCGCAACGCTTCCGCCCAGCGCGCCGCC
GCCGCCGAGGGCGAGCTGGTTCAGAGCTGGCCGGCCGGCAGCGCCCTGCCCGCCCGCAGCAACCTGCTGCCG
CTGGAACAGGCCGCGAGCCTGGGCGGCACCGCTGCCCAGGCGCTGGGCAAGGGGCAGGGTTGGATCGAGTTG
TCCGGCGCGCGCCAGGGCGATACCCCGCTGCTCGGCGCCTGGGTCGGCCAGACCGGCTCCGGCCAGCGCTTC
GCCGTGCTTGCCCCGGCCAGCGACCTGTGGCAGGTCTTCGCCGACCGGGCCGGCGCTTACGCCGTCGCCGTG
CTGGTGCTGATGCTGGCGCTGCTGGCGGCCTCGCAACTGCTGATCCGCTTCATCCTCACCCACCTGCATACC
CTCAAGGACGTGATGCTGCACGTCGAAAAGAGCGGCGACCTGTCCGCTCGCGTACCGCTGCAGGGACGCGAC
GAAGTCGGCCAGATGGCCAGCGCCTTCAACGCCATGCAGGCCGGCTACCAGCGCATCGTCGGCACCGTCGCC
GCGGCCGCTACCAAGCTCGACGAAGGCGCCCAGGCGCTGGCCCGCAGCATGGGCCAGGTACGCCAGGGCATG
CTCGGCCAGCAGAGCGAGACCGACCAGACCGCCACCGCGATCAACGAAATGTCCACCACGGTCTTCCATATC
GCCCAGCACGCCGCCGATACCCGTGACCAGTCGCAGGAAGCCGACCGCCTGGCCGGCGCCGGCCAGCAGGCG
GTGAGCCGGGTCAGCGCGTCGATCGCCGGGTTGTCCCAGGGCGTCCAGGACACCGCCGAGATGATCCAGAAG
CTGGCCGAGGACAGCCAGAAGATCAGCGGCGTGGTCAACGTGATCCACGGCATCGCCGAACAGACCAACCTG
CTTGCCCTCAACGCCGCCATCGAGGCCGCGCGGGCCGGGGAAATGGGCCGCGGCTTCGCCGTTGTGGCCGAT
GAGGTGCGCAACCTCGCCCGTCGCGTGCAGGACTCCACCGACGAGATCACCCAGATGATCCTCGCCTTGCAG
TCGGGCACCCGCGACGCCGTGGAGTTCATGCAGGAAAGCTCGCTCAAGGCAGACGGTTGCGTCAGCCAGGCC
GGCGACGCCGGCGAGGCGCTGGCGGCGATCGCCAACGCGGTGGCGCAGATGCGTGAAAGCAACACGCAGATC
GCCGTCGCCGCCGAACAGCAGAGCCAGGTCGCGGAAGAGATGACCCGTTCGGTGGTGGGCATCCGCGACGTC
ACCGAACTCACCGTGCAGCAGACCGTCGAGTCGGCGGCCACCAGTCAGCAACTGGTCGACCTGGCGGGCGAT
CTGACCCGCGCCATCGGCCAGCTACGCCTCTGA