ViewGene
Locus Name:
GeneID:
Location:

GeneID:973
TrivialName: PA14_17250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17250
PAO1 Ortholog Locus:PA3641
Sequence Length:1416
Protein Length:471
Start: 1477787
Stop: 1479202
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07029.1|AE004784_2 (AE004784) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 470/471 (99%), Positives = 470/471 (99%)
Sequence:
ATGCAAGAATTCGCCACTCAGGTCGTCGACCTGCTCAACGGCCTTATCTGGGGCAAGATCCTCATCTGGCTG
CTGGTCGGTTGCGGCCTGTACTTCACTGTGCGCCTGGGATTGATCCAGTTCCGCCACTTCGGCCATACCTTC
AGCGTGCTCAAGGGCAGCCGCCAGTCGGACGACTCGGGAATCTCCTCGTTCCAGGCGCTCTGCACCTCTCTG
GCGGCGCGGGTCGGTACCGGCAACGTCGCCGGCGTGGCGGTAGCGATCACGCTCGGCGGTCCCGGCGCAGTG
TTCTGGATGTGGGCGATCGCCCTGGTGGGGATGGCGACCGGCTTCGTCGAGGCGACCCTGGCCCAGTTGTTC
AAGATTCGCGACGACAAGGGCCAGTTCCGTGGCGGCCCGGCCTACTACATGGAGAAGGGCCTGGGCGCGCGC
TGGATGGGCATCCTGTTCTCGATCTTCCTGATCATCGCCTTCGGTTTCGTCTTCAACTCGGTGCAGGCCAAT
ACCATCACCGGTGCCATGCAGGGCGCCTTCGGCGTGCCGACCTGGATCAGCGGCATCGCCGTGGTGATCCTC
ACCGCGTTGATCATCTTCGGCGGCCTGCGCTCCATCGCGCGCTTCTCCGAGCTGGCGGTACCCTTCATGGCG
GTGGCCTACCTGCTGCTGGCGGTGGGCATCATCCTGTTCAATCTCAGCGAACTGCCGGGCGTCCTGGAGATG
GTGGTGAAGAGTGCCTTCGGCTGGCACGAGGCCGCCGCCGGCGGCATCGGCGCGGCGATCCTCAACGGCTTC
AAGCGCGGCTTGTTCTCCAACGAAGCAGGCATGGGCTCGGCGCCCAACGCCGCCGCCTCGGCCACGCCCTAT
CCGCCGCACCCGGCGTCCCAGGGCTACGTGCAGATGGCCGGCGTGTTCATCGATACCCTGCTGATCTGCACC
GCTTCCGCCGCCATCATCCTGCTGGCCGGACCGCAGGAAGGCGAGGGCATCATGCTGGTGCAGAATGCCCTG
ACCAGCCAGGTCGGCGACTGGGGCCGCTACTTCCTGGCGGTGATCATCCTGTTCTTCGCCTTCACCTCGATC
GTCGCCAACTACTTCTATGCCGAGAACTGCCTGGTATTCCTCGAGCACAACCACCTGGCGGGCCTGTTGATC
TTCCGCCTGATCGTGCTGGCGATGGTGATGTTCGGCGCGCTGGCTTCGCTGCCGTTCGTCTGGAACCTCGCC
GACGTGTCGATGGGCCTGATGGCGATCACCAACCTGATCGCCATCCTGCTGCTGTCCAACCTCGCGATCAAG
CTGGCCAAGGACTACAACGCCCAGCGCAAGGCCGGCAAGCTGCCGACCTTCGACGCCAGCCAGTTCCCCGAA
GTCCAGCAGAAGCTCGAACCGGGTATCTGGGACGACCGCCGCGCCTGA
Translation:
MQEFATQVVDLLNGLIWGKILIWLLVGCGLYFTVRLGLIQFRHFGHTFSVLKGSRQSDDSGISSFQALCTSL
AARVGTGNVAGVAVAITLGGPGAVFWMWAIALVGMATGFVEATLAQLFKIRDDKGQFRGGPAYYMEKGLGAR
WMGILFSIFLIIAFGFVFNSVQANTITGAMQGAFGVPTWISGIAVVILTALIIFGGLRSIARFSELAVPFMA
VAYLLLAVGIILFNLSELPGVLEMVVKSAFGWHEAAAGGIGAAILNGFKRGLFSNEAGMGSAPNAAASATPY
PPHPASQGYVQMAGVFIDTLLICTASAAIILLAGPQEGEGIMLVQNALTSQVGDWGRYFLAVIILFFAFTSI
VANYFYAENCLVFLEHNHLAGLLIFRLIVLAMVMFGALASLPFVWNLADVSMGLMAITNLIAILLLSNLAIK
LAKDYNAQRKAGKLPTFDASQFPEVQQKLEPGIWDDRRA*
AnnotationID:982GeneID:973
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 21:09:24
Gene Name:
Confidence Code:3
GeneProduct:putative Na+/alanine symporter
Cell Localization:()
Synonyms:yaaJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1115,pfam01235
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC58766.1| (AP005074) sodium/alanine symporter [Vibrio parahaemolyticus]
          Length = 477

 Score =  658 bits (1698), Expect = 0.0
 Identities = 326/474 (68%), Positives = 391/474 (82%), Gaps = 9/474 (1%)

>gb|AAL18970.1| (AE008693) putative alanine/glycine transport protein [Salmonella
           typhimurium LT2]
          Length = 476

 Score =  512 bits (1318), Expect = e-144
 Identities = 251/464 (54%), Positives = 332/464 (71%), Gaps = 8/464 (1%)

>gb|AAN78511.1|AE016755_11 (AE016755) Putative transporter yaaJ [Escherichia coli CFT073]
          Length = 476

 Score =  483 bits (1243), Expect = e-135
 Identities = 239/465 (51%), Positives = 315/465 (67%), Gaps = 8/465 (1%)








 
Structural Features:
COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]
CD-Length = 452 residues,  99.8% aligned
Score =  534 bits (1377), Expect = 2e-152
Identities = 253/454 (55%), Positives = 322/454 (70%), Gaps = 13/454 (2%)

pfam01235, Na_Ala_symp, Sodium:alanine symporter family.
CD-Length = 415 residues,  98.1% aligned
Score =  449 bits (1157), Expect = 6e-127
Identities = 222/409 (54%), Positives = 293/409 (71%), Gaps = 10/409 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1949




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19091




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31902




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:973_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:973
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1736
                           PA3641_tr
                           translation of PA3641
                           471
                           99.78
                           99.78
                           0
                           2388.0
     

     
     
61378
                           gb|AAG07029.1|AE004784_2
                           (AE004784) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           471
                           99.78
                           99.78
                           0
                           2388.0
     

     
     
61380
                           gb|AAO09054.1|AE016798_214
                           (AE016798) Na+/alanine symporter [Vibrio vulnificus CMCP6]
                           480
                           68.12
                           81.25
                           13
                           1691.0
     

     
     
61379
                           dbj|BAC58766.1|
                           (AP005074) sodium/alanine symporter [Vibrio parahaemolyticus]
                           481
                           67.77
                           81.28
                           14
                           1703.0
     

     
     
61381
                           gb|AAF95499.1|
                           (AE004306) sodium/alanine symporter [Vibrio cholerae O1 biovar eltor str. N16961]
                           480
                           66.87
                           81.45
                           13
                           1690.0
     

     






      

          
GC ORFID: 43975How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3641Glimmer Score: 

          
Start: 3476150Stop: 3474735

          
Length: 1416


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3641 translation of PA3641Homolog Bit Score 924.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2910 (ORF: BLASTX 448.0), t_PA2252 (ORF: BLASTX 427.0), t_PA3641 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGAATTCGCCACTCAGGTCGTCGACCTGCTCAACGGCCTTATCTGGGGCAAGATCCTCATCTGGCTG 
CTGGTCGGTTGCGGCCTGTACTTCACTGTGCGCCTGGGATTGATCCAGTTCCGCCACTTCGGCCATACCTTC 
AGCGTGCTCAAGGGCAGCCGCCAGTCGGACGACTCGGGAATCTCCTCGTTCCAGGCGCTCTGCACCTCTCTG 
GCGGCGCGGGTCGGTACCGGCAACGTCGCCGGCGTGGCGGTAGCGATCACGCTCGGCGGTCCCGGCGCAGTG 
TTCTGGATGTGGGCGATCGCCCTGGTGGGGATGGCGACCGGCTTCGTCGAGGCGACCCTGGCCCAGTTGTTC 
AAGATTCGCGACGACAAGGGCCAGTTCCGTGGCGGCCCGGCCTACTACATGGAGAAGGGCCTGGGCGCGCGC 
TGGATGGGCATCCTGTTCTCGATCTTCCTGATCATCGCCTTCGGTTTCGTCTTCAACTCGGTGCAGGCCAAT 
ACCATCACCGGTGCCATGCAGGGCGCCTTCGGCGTGCCGACCTGGATCAGCGGCATCGCCGTGGTGATCCTC 
ACCGCGTTGATCATCTTCGGCGGCCTGCGCTCCATCGCGCGCTTCTCCGAGCTGGCGGTACCCTTCATGGCG 
GTGGCCTACCTGCTGCTGGCGGTGGGCATCATCCTGTTCAATCTCAGCGAACTGCCGGGCGTCCTGGAGATG 
GTGGTGAAGAGTGCCTTCGGCTGGCACGAGGCCGCCGCCGGCGGCATCGGCGCGGCGATCCTCAACGGCTTC 
AAGCGCGGCTTGTTCTCCAACGAAGCAGGCATGGGCTCGGCGCCCAACGCCGCCGCCTCGGCCACGCCCTAT 
CCGCCGCACCCGGCGTCCCAGGGCTACGTGCAGATGGCCGGCGTGTTCATCGATACCCTGCTGATCTGCACC 
GCTTCCGCCGCCATCATCCTGCTGGCCGGACCGCAGGAAGGCGAGGGCATCATGCTGGTGCAGAATGCCCTG 
ACCAGCCAGGTCGGCGACTGGGGCCGCTACTTCCTGGCGGTGATCATCCTGTTCTTCGCCTTCACCTCGATC 
GTCGCCAACTACTTCTATGCCGAGAACTGCCTGGTATTCCTCGAGCACAACCACCTGGCGGGCCTGTTGATC 
TTCCGCCTGATCGTGCTGGCGATGGTGATGTTCGGCGCGCTGGCTTCGCTGCCGTTCGTCTGGAACCTCGCC 
GACGTGTCGATGGGCCTGATGGCGATCACCAACCTGATCGCCATCCTGCTGCTGTCCAACCTCGCGATCAAG 
CTGGCCAAGGACTACAACGCCCAGCGCAAGGCCGGCAAGCTGCCGACCTTCGACGCCAGCCAGTTCCCCGAA 
GTCCAGCAGAAGCTCGAACCGGGTATCTGGGACGACCGCCGCGCCTGA