ViewGene
Locus Name:
GeneID:
Location:

GeneID:972
TrivialName: PA14_10730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10730
PAO1 Ortholog Locus:PA4115
Sequence Length:1386
Protein Length:461
Start: 925350
Stop: 923965
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07502.1|AE004828_3 (AE004828) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 461/461 (100%), Positives = 461/461 (100%)
Sequence:
ATGTCTCATCGCCCTGTGATCAACGCCTCGGTCAGTCCGAAAGGCACGCTGGAAACCCTCTCCCAACGCGAA
GTGCAACAACTGAGCGAAACCGCCAACGGCAAGACCTACCAACTGTTCCGCCAGTGCGCCCTGGCGATCCTC
AATACCGGCGCCCACAGCGACAACGCCAAGACCATCCTCGACGCCTACAAGGACTTCGAGGTGCGTATCCAC
CAGCAGGACCGAGGCGTGCGCCTGGAGCTGATCAACGCGCCGGCCGACGCCTTCGTCGATGGCGAGATGATC
GCCAGCACCCGCGAGATGCTGTTCAGCGCCCTGCGCGACATCGTCTACACCCAGAGCGGGCTGGACAGCCAG
CACGTCGACCTGGACAGCTCCCAGGGCCTCACCGACTACGTCTTCCAGCTGCTGCGCAACGCCCGTACGCTG
CGCCCCGGCGTCGAGCCGAAGATCGTCGTGTGCTGGGGCGGCCACTCGATCAGCAGCGAGGAATACAAGTAC
ACCAAGAGGGTCGGCCACGAACTCGGCCTGCGCAGCCTGGATGTCTGCACCGGCTGCGGACCGGGGGTGATG
AAGGGGCCGATGAAGGGCGCCACCATCAGCCACGCCAAGCAGCGCATCGTCGGCGGCCGCTACCTGGGCCTG
ACCGAGCCGGGGATCATCGCCGCCGAGGCGCCGAACCCGATCGTCAACGAACTGGTGATCCTGCCGGACATC
GAGAAGCGCCTGGAAGCCTTCGTCCGCGTCGGCCACGGGGTCATCATCTTCCCCGGCGGCGCCGGGACCGCG
GAGGAGTTCCTCTACCTGCTGGGCATCCTCATGCACCCGGACAACCAGGACCTGCCCTTCCCGGTCATCCTC
ACCGGTCCCCGCAGCGCCGAAGCCTACCTGCAGCAGCTCCATGAATTCGTCGGGGCGACCCTCGGCCATGCG
GCGCAGCGCCACTACCGGATCGTCATCGACGACCCGGCCGAGGTGGCCAAGCAGATGGCCCAGGGCCTGAAG
GAAGTGAAGCAGTTCCGCCGCGAGCGCAACGACGCCTTCCACTTCAACTGGATGCTGAAGATCGATGAAAGC
TTCCAGCGCCCGTTCGAGCCGACCCACGAGAACATGGCCAGCCTCCAGCTCAGCCGCAGCCTGCCGCCCCAC
GAGTTGGCGGCCAACCTGCGCCGCGCGTTTTCCGGGATCGTCGCCGGCAACGTCAAGGACAACGGCATCCGC
ATGATCGAGCAATACGGGCCCTACGAGATCCACGGCGACCCGGCGGTGATGCTGCCGCTGGACCGCCTGCTG
CAGGCCTTCGTCAAGCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCCTACGTCCCCTGCTACCGGGTGGTG
CAGACCGAGGCGGCCTGA
Translation:
MSHRPVINASVSPKGTLETLSQREVQQLSETANGKTYQLFRQCALAILNTGAHSDNAKTILDAYKDFEVRIH
QQDRGVRLELINAPADAFVDGEMIASTREMLFSALRDIVYTQSGLDSQHVDLDSSQGLTDYVFQLLRNARTL
RPGVEPKIVVCWGGHSISSEEYKYTKRVGHELGLRSLDVCTGCGPGVMKGPMKGATISHAKQRIVGGRYLGL
TEPGIIAAEAPNPIVNELVILPDIEKRLEAFVRVGHGVIIFPGGAGTAEEFLYLLGILMHPDNQDLPFPVIL
TGPRSAEAYLQQLHEFVGATLGHAAQRHYRIVIDDPAEVAKQMAQGLKEVKQFRRERNDAFHFNWMLKIDES
FQRPFEPTHENMASLQLSRSLPPHELAANLRRAFSGIVAGNVKDNGIRMIEQYGPYEIHGDPAVMLPLDRLL
QAFVKQHRMKLPGGAAYVPCYRVVQTEAA*
AnnotationID:981GeneID:972
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative decarboxylase family protein
Cell Localization:()
Synonyms:PA4115
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1611,pfam03641
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55427.1| (AE016862) decarboxylase family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 457

 Score =  800 bits (2066), Expect = 0.0
 Identities = 387/456 (84%), Positives = 426/456 (93%)

>gb|AAN69262.1|AE016560_9 (AE016787) decarboxylase family protein [Pseudomonas putida KT2440]
          Length = 457

 Score =  795 bits (2054), Expect = 0.0
 Identities = 390/455 (85%), Positives = 418/455 (91%)

>gb|AAO08833.1|AE016797_288 (AE016797) Predicted Rossmann fold nucleotide-binding protein
           [Vibrio vulnificus CMCP6]
          Length = 458

 Score =  585 bits (1507), Expect = e-166
 Identities = 275/450 (61%), Positives = 355/450 (78%), Gaps = 1/450 (0%)








 
Structural Features:
COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein
CD-Length = 205 residues,  95.1% aligned
Score =  172 bits (438), Expect = 7e-44
Identities = 67/202 (33%), Positives = 89/202 (44%), Gaps = 9/202 (4%)

pfam03641, Lysine_decarbox, Possible lysine decarboxylase.
CD-Length = 136 residues,  99.3% aligned
Score =  112 bits (281), Expect = 1e-25
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 17/147 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1947




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19089




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36850




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:972_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:972
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1735
                           PA4115_tr
                           translation of PA4115
                           461
                           99.99
                           99.99
                           0
                           2390.0
     

     
     
61351
                           gb|AAG07502.1|AE004828_3
                           (AE004828) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           461
                           99.99
                           99.99
                           0
                           2390.0
     

     
     
61353
                           gb|AAN69262.1|AE016560_9
                           (AE016787) decarboxylase family protein [Pseudomonas putida KT2440]
                           461
                           84.59
                           90.67
                           4
                           2053.0
     

     
     
61352
                           gb|AAO55427.1|
                           (AE016862) decarboxylase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           461
                           83.94
                           92.40
                           4
                           2065.0
     

     
     
61354
                           gb|AAO08833.1|AE016797_288
                           (AE016797) Predicted Rossmann fold nucleotide-binding protein [Vibrio vulnificus CMCP6]
                           464
                           59.26
                           76.72
                           9
                           1504.0
     

     






      

          
GC ORFID: 43974How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4115Glimmer Score: 

          
Start: 4028587Stop: 4029972

          
Length: 1386


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4115 translation of PA4115Homolog Bit Score 925.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7568 (ORF: BLASTX 808.0), t_PA4115 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTCATCGCCCTGTGATCAACGCCTCGGTCAGTCCGAAAGGCACGCTGGAAACCCTCTCCCAACGCGAA 
GTGCAACAACTGAGCGAAACCGCCAACGGCAAGACCTACCAACTGTTCCGCCAGTGCGCCCTGGCGATCCTC 
AATACCGGCGCCCACAGCGACAACGCCAAGACCATCCTCGACGCCTACAAGGACTTCGAGGTGCGTATCCAC 
CAGCAGGACCGAGGCGTGCGCCTGGAGCTGATCAACGCGCCGGCCGACGCCTTCGTCGATGGCGAGATGATC 
GCCAGCACCCGCGAGATGCTGTTCAGCGCCCTGCGCGACATCGTCTACACCCAGAGCGGGCTGGACAGCCAG 
CACGTCGACCTGGACAGCTCCCAGGGCCTCACCGACTACGTCTTCCAGCTGCTGCGCAACGCCCGTACGCTG 
CGCCCCGGCGTCGAGCCGAAGATCGTCGTGTGCTGGGGCGGCCACTCGATCAGCAGCGAGGAATACAAGTAC 
ACCAAGAGGGTCGGCCACGAACTCGGCCTGCGCAGCCTGGATGTCTGCACCGGCTGCGGACCGGGGGTGATG 
AAGGGGCCGATGAAGGGCGCCACCATCAGCCACGCCAAGCAGCGCATCGTCGGCGGCCGCTACCTGGGCCTG 
ACCGAGCCGGGGATCATCGCCGCCGAGGCGCCGAACCCGATCGTCAACGAACTGGTGATCCTGCCGGACATC 
GAGAAGCGCCTGGAAGCCTTCGTCCGCGTCGGCCACGGGGTCATCATCTTCCCCGGCGGCGCCGGGACCGCG 
GAGGAGTTCCTCTACCTGCTGGGCATCCTCATGCACCCGGACAACCAGGACCTGCCCTTCCCGGTCATCCTC 
ACCGGTCCCCGCAGCGCCGAAGCCTACCTGCAGCAGCTCCATGAATTCGTCGGGGCGACCCTCGGCCATGCG 
GCGCAGCGCCACTACCGGATCGTCATCGACGACCCGGCCGAGGTGGCCAAGCAGATGGCCCAGGGCCTGAAG 
GAAGTGAAGCAGTTCCGCCGCGAGCGCAACGACGCCTTCCACTTCAACTGGATGCTGAAGATCGATGAAAGC 
TTCCAGCGCCCGTTCGAGCCGACCCACGAGAACATGGCCAGCCTCCAGCTCAGCCGCAGCCTGCCGCCCCAC 
GAGTTGGCGGCCAACCTGCGCCGCGCGTTTTCCGGGATCGTCGCCGGCAACGTCAAGGACAACGGCATCCGC 
ATGATCGAGCAATACGGGCCCTACGAGATCCACGGCGACCCGGCGGTGATGCTGCCGCTGGACCGCCTGCTG 
CAGGCCTTCGTCAAGCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCCTACGTCCCCTGCTACCGGGTGGTG 
CAGACCGAGGCGGCCTGA