ViewGene
Locus Name:
GeneID:
Location:

GeneID:971
TrivialName: PA14_27410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27410
PAO1 Ortholog Locus:PA2837
Sequence Length:1440
Protein Length:479
Start: 2379173
Stop: 2377734
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06225.1|AE004710_7 (AE004710) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 473/479 (98%), Positives = 476/479 (99%)
Sequence:
ATGAAAGGCACTCCGCTCCTGCTTATTGCCAGCCTTGCGCTCGGCGCCTGCAGCCTCGGTCCCGACTTCACC
CGCCCGAACCGCCCTGCGCCCGGCGACTGGTCGCTCCAGGCCGCTACCGGCAACCCCAGCCACCTCGCCGCC
GCGCCACTCGCAGCACAATGGTGGACGCTGTTCGACGACGCGCAATTGAACGCCCTGCTGCAACGGGTCCAG
CGTGCCAACCTCGACCTGCGCAGCGCCGCGGCGCGCCTGCAGCAGAGCCGCGCGATCCGTCGCAGCCTCGGC
GGTGACGCCCTGCCCTCGGTGGACGCCAGCGGCAACTACCAGCGCCAGCGGACCACCAGCGCCGGCCTGTTC
GATCCTTCCGGCAAGGCCGGCAAAGGCAACTACAACCACGCCCTGGCCGGCTTCGACGCCTCTTGGGAGCTG
GACTTCTGGGGCCGCGTGCGACGCGAGCTGGAAGCCGCCGACGCGACGGTGGAAGCCAGCGAGAACGAACTG
CGCGACGTGCAGGTCTCGGTGCTGGCGGAAGCCGCGCGCGACTATATCCAGTTGCGCGGCGAACAGAGCCGT
GCGGCGATCATCCGTGACAACCTCGAGACCGCACGGCACAGCCTGGAACTCACCCGCACGCGCCTGGCCAAC
GGCGTCGCCACCGACCTCGAGGTAGCCCAGGCGCTGGCCCAGGTGGCCAGCATGGAGGCACGCCTGCCCGAG
GTGGAAAAGAACCAGGCGCACCTGGTCAACGCCCTTGGCTACCTGGTCGGAGCCAGCCCCGGCAGCCTGCTC
GCCGAACTCGGCCCGGCGCGGGAGATTCCGCGTCCGCCGGGCAGCGTGCCGGTCGGCCTGCCGTCCGAACTG
GCCCAGCGCCGCCCCGACATCCGTCGTGCCGAAGCGCGCCTGCACGCCGCTACCGCCAGCATCGGCGTGGCC
AAGGCGGACTTCTATCCGCGCATCACGCTCAACGGCAACTTCGGTTTCGAATCCCTGCAACTGTCCAGCCTG
GGCGACTGGGACCATCGCCAGTTCGCCATCGGCCCGGCGTTCAGCCTGCCGATCTTCGAAGGCGGACGCCTG
CGCGGACGCCTGGAGCTACGCGAGGCACAGCAGCAGGAAGCCGCCATCGACTACCAGCGCACCGTGCTGCGT
GCCTGGCAGGAAGTCGACGACGCGATGCACGACTACGCCGCCAACCAGCGCCGCCAGGAGCGCCTCGGCGAA
GCCGTGGCGCAGAACCGCCGCGCCCTGCAGAGCGCCCGCGAGCAATACCGCGCCGGCGCGGTGGACTTCCTC
AGCGTGCTCGACAGCCAGCGGCAACTGCTGGACAACCAGGAACAGCAGGTCGCCAGCGACGAAGCGGTGTCT
CTGACCCTGGTCAACCTCTACAAGGCGCTGGGCGGCGGCTGGAGCCCAACGTCCGACCCGGCGTCGGGCTGA
Translation:
MKGTPLLLIASLALGACSLGPDFTRPNRPAPGDWSLQAATGNPSHLAAAPLAAQWWTLFDDAQLNALLQRVQ
RANLDLRSAAARLQQSRAIRRSLGGDALPSVDASGNYQRQRTTSAGLFDPSGKAGKGNYNHALAGFDASWEL
DFWGRVRRELEAADATVEASENELRDVQVSVLAEAARDYIQLRGEQSRAAIIRDNLETARHSLELTRTRLAN
GVATDLEVAQALAQVASMEARLPEVEKNQAHLVNALGYLVGASPGSLLAELGPAREIPRPPGSVPVGLPSEL
AQRRPDIRRAEARLHAATASIGVAKADFYPRITLNGNFGFESLQLSSLGDWDHRQFAIGPAFSLPIFEGGRL
RGRLELREAQQQEAAIDYQRTVLRAWQEVDDAMHDYAANQRRQERLGEAVAQNRRALQSAREQYRAGAVDFL
SVLDSQRQLLDNQEQQVASDEAVSLTLVNLYKALGGGWSPTSDPASG*
AnnotationID:980GeneID:971
AnnotatorUID: diggins
Modification Date/Time: 2005-06-13 16:04:32
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein precursor
Cell Localization:(6) Outer membrane protein
Synonyms:trpC
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative multidrug efflux MFS outer membrane protein
Functional Category Confidence Code:5
COGs:COG1538
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66897.1|AE016318_4 (AE016778) multidrug efflux MFS outer membrane protein, putative
           [Pseudomonas putida KT2440]
          Length = 484

 Score =  506 bits (1303), Expect = e-142
 Identities = 267/473 (56%), Positives = 333/473 (70%), Gaps = 2/473 (0%)

>gb|AAL95702.1|AF360362_4 (AF360362) TrpC [Pseudomonas putida]
          Length = 484

 Score =  505 bits (1300), Expect = e-142
 Identities = 267/467 (57%), Positives = 331/467 (70%), Gaps = 2/467 (0%)








 
Structural Features:
COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / 
Intracellular trafficking and secretion]







   
Genomic Context:






   
Comment:
other possible gene name: opmA


















    ReferenceID:1945




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19087




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36220




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:971_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:971
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1734
                           PA2837_tr
                           translation of PA2837
                           479
                           98.74
                           99.37
                           0
                           2391.0
     

     
     
61345
                           gb|AAG06225.1|AE004710_7
                           (AE004710) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           479
                           98.74
                           99.37
                           0
                           2391.0
     

     
     
61346
                           gb|AAN66897.1|AE016318_4
                           (AE016778) multidrug efflux MFS outer membrane protein, putative [Pseudomonas putida KT2440]
                           489
                           55.82
                           69.73
                           15
                           1306.0
     

     
     
61347
                           gb|AAL95702.1|AF360362_4
                           (AF360362) TrpC [Pseudomonas putida]
                           489
                           55.41
                           69.12
                           15
                           1302.0
     

     
     
61348
                           emb|CAE92885.1|
                           (AJ617740) putative outer membrane protein or channel-forming component [Pseudomonas putida]
                           515
                           45.04
                           59.80
                           40
                           1037.0
     

     






      

          
GC ORFID: 43973How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2837Glimmer Score: 

          
Start: 2574754Stop: 2576193

          
Length: 1440


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2837 translation of PA2837Homolog Bit Score 925.0

          
Other Homologs:  t_PA2837 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGGCACTCCGCTCCTGCTTATTGCCAGCCTTGCGCTCGGCGCCTGCAGCCTCGGTCCCGACTTCACC 
CGCCCGAACCGCCCTGCGCCCGGCGACTGGTCGCTCCAGGCCGCTACCGGCAACCCCAGCCACCTCGCCGCC 
GCGCCACTCGCAGCACAATGGTGGACGCTGTTCGACGACGCGCAATTGAACGCCCTGCTGCAACGGGTCCAG 
CGTGCCAACCTCGACCTGCGCAGCGCCGCGGCGCGCCTGCAGCAGAGCCGCGCGATCCGTCGCAGCCTCGGC 
GGTGACGCCCTGCCCTCGGTGGACGCCAGCGGCAACTACCAGCGCCAGCGGACCACCAGCGCCGGCCTGTTC 
GATCCTTCCGGCAAGGCCGGCAAAGGCAACTACAACCACGCCCTGGCCGGCTTCGACGCCTCTTGGGAGCTG 
GACTTCTGGGGCCGCGTGCGACGCGAGCTGGAAGCCGCCGACGCGACGGTGGAAGCCAGCGAGAACGAACTG 
CGCGACGTGCAGGTCTCGGTGCTGGCGGAAGCCGCGCGCGACTATATCCAGTTGCGCGGCGAACAGAGCCGT 
GCGGCGATCATCCGTGACAACCTCGAGACCGCACGGCACAGCCTGGAACTCACCCGCACGCGCCTGGCCAAC 
GGCGTCGCCACCGACCTCGAGGTAGCCCAGGCGCTGGCCCAGGTGGCCAGCATGGAGGCACGCCTGCCCGAG 
GTGGAAAAGAACCAGGCGCACCTGGTCAACGCCCTTGGCTACCTGGTCGGAGCCAGCCCCGGCAGCCTGCTC 
GCCGAACTCGGCCCGGCGCGGGAGATTCCGCGTCCGCCGGGCAGCGTGCCGGTCGGCCTGCCGTCCGAACTG 
GCCCAGCGCCGCCCCGACATCCGTCGTGCCGAAGCGCGCCTGCACGCCGCTACCGCCAGCATCGGCGTGGCC 
AAGGCGGACTTCTATCCGCGCATCACGCTCAACGGCAACTTCGGTTTCGAATCCCTGCAACTGTCCAGCCTG 
GGCGACTGGGACCATCGCCAGTTCGCCATCGGCCCGGCGTTCAGCCTGCCGATCTTCGAAGGCGGACGCCTG 
CGCGGACGCCTGGAGCTACGCGAGGCACAGCAGCAGGAAGCCGCCATCGACTACCAGCGCACCGTGCTGCGT 
GCCTGGCAGGAAGTCGACGACGCGATGCACGACTACGCCGCCAACCAGCGCCGCCAGGAGCGCCTCGGCGAA 
GCCGTGGCGCAGAACCGCCGCGCCCTGCAGAGCGCCCGCGAGCAATACCGCGCCGGCGCGGTGGACTTCCTC 
AGCGTGCTCGACAGCCAGCGGCAACTGCTGGACAACCAGGAACAGCAGGTCGCCAGCGACGAAGCGGTGTCT 
CTGACCCTGGTCAACCTCTACAAGGCGCTGGGCGGCGGCTGGAGCCCAACGTCCGACCCGGCGTCGGGCTGA