ViewGene

Locus Name:
GeneID:
Location:

GeneID:970
TrivialName: PA14_51320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51320
PAO1 Ortholog Locus:PA1005
Sequence Length:1434
Protein Length:477
Start: 4559488
Stop: 4560921
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04394.1|AE004533_5 (AE004533) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 476/477 (99%), Positives = 476/477 (99%)
Sequence:
ATGAATGTACTGCGCCCTGCCCTGTTGACGCTCGCCTGCATGCTCGCTTCACCGGTCATGTCGGACGATCTG
CCCTCCCTGGGCGACGCATCTTCCTCGATCGTTTCGCCGGAGCAGGAGTTCCAGCTGGGCCGCGCCTGGCTG
AGCATGCTGCGCAACCAGGTCGATGCGATCTCCGACCCGCAGCTCAAGGACTTCGTCGAAAGCAGCGTCTAC
CGGCTGGCCGAAACCAGCGACCTGCAGGACCACCGGCTGGCCTTCATCCTCATCCGCGACGCACAGATCAAC
GCCTTCGCCGCGCCCGGCGGCGTGATCGGGGTCAACGGCGGGCTACTGCTCAACGCCCAGACCGAAGGCGAG
TATGCCGCGGTGCTGGCCCACGAGCTCGGCCACCTGATCCAGCGCCACTTCGCCCGCGGCATCGAGGCACAG
CAGCGCATGCAACTGCCGGTGATGGCAGCGATGCTCGCCGGCATCGTCGCCGCGGCCGCCGGCGCAGGGGAT
GCGGGTATCGCGGCGATCGCCGGGACCCAGGCGGCGGCGATCCAGAACCAGTTGCGCTTTTCCCGGCAGAAC
GAGCAGGAAGCCGACCGCGTCGGCGTCACCAACATGGTTCGCGCCGGTTACGATCCGCGCTCGATGCCGAAC
ATGTTCGAGCGCCTGGCGCGGCAGTATCGCTACGACGGCAAGCCGCCGGAGTTCCTCCTCACCCACCCGGTC
ACCGAATCGCGTATCGCCGACACCCGCAACCGCGCCGAACAGTATCCCCAGGGCGGCAAGGAAGACAGCCTG
CGCTACCAGCAGATGCGCGCGCGCACTCAGTTGCTCTTCGAGGAAACCCCGGGGATGGCCGGCAAGCGCTTC
CGCGCCATGCTCAACGACAATCCCAAGCTGGATGCCGCGCGCTACGGACTGGCCATCTCGCAGACGCGCATC
GGCCAGCTCAACGATGCCCGTGACAACCTCAGGCAATTGCTGGCGAAGGCACCCAACGACGTGGCCTACAAC
CTGGCCCAGGTCGAGTTGGACATCACCGCCAACCGCCTGCCGGATGCCGACCAGCGGTTGAAGAAGATGCTC
GCCCAGTTCCCCAGCAGCTACCCGCTGAAACAGGTGCGCGCCGACCTGATGCTGAAGATGAGCAAGCCGCAG
GAATCGGAGAAGATCCTCGACGACCTGAGCAAGGCGCGGCCGCTGGACCCGGATGTCTGGAACCGCCTGGCC
GAGGTGCGCAGCCTGACCAACAACGCCATCGGCGTGCACCAGGCCCGGGCCGAGTACCTGTCTCTGACCGGC
GACTACCAGGCCGCCATCGAGCAGCTCGATTTCGCCAAGCGCCGCGCTGGCGGCAACTTCCAACTGGCTGCG
CGACTCGACGCCCGCCAGCAGGAAATTCGCCAGCAGGAAAAGATGGTCAAGGAAATGTTCCGCTGA
Translation:
MNVLRPALLTLACMLASPVMSDDLPSLGDASSSIVSPEQEFQLGRAWLSMLRNQVDAISDPQLKDFVESSVY
RLAETSDLQDHRLAFILIRDAQINAFAAPGGVIGVNGGLLLNAQTEGEYAAVLAHELGHLIQRHFARGIEAQ
QRMQLPVMAAMLAGIVAAAAGAGDAGIAAIAGTQAAAIQNQLRFSRQNEQEADRVGVTNMVRAGYDPRSMPN
MFERLARQYRYDGKPPEFLLTHPVTESRIADTRNRAEQYPQGGKEDSLRYQQMRARTQLLFEETPGMAGKRF
RAMLNDNPKLDAARYGLAISQTRIGQLNDARDNLRQLLAKAPNDVAYNLAQVELDITANRLPDADQRLKKML
AQFPSSYPLKQVRADLMLKMSKPQESEKILDDLSKARPLDPDVWNRLAEVRSLTNNAIGVHQARAEYLSLTG
DYQAAIEQLDFAKRRAGGNFQLAARLDARQQEIRQQEKMVKEMFR*
AnnotationID:979GeneID:970
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:36
Gene Name:
Confidence Code:3
GeneProduct:Putative Zn-dependent protease
Cell Localization:()
Synonyms:PA1005
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4783
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG4783, Putative Zn-dependent protease, contains TPR repeats. Score: 479, 5e-136
pfam01435, Peptidase_M48, Peptidase family M48. Score: 102, 1e-22
Genomic Context:
Comment:
ReferenceID:1943
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19085
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:970

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1733 PA1005_tr translation of PA1005 477 99.79 99.79 0 2391.0
61342 gb|AAG04394.1|AE004533_5 (AE004533) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 477 99.79 99.79 0 2391.0
61343 gb|AAN66856.1|AE016314_3 (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440] 478 70.92 85.98 1 1795.0
61344 gb|AAO57419.1| (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 477 69.81 83.64 0 1742.0
GC ORFID: 43972How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1005Glimmer Score:
Start: 394419Stop: 392986
Length: 1434
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1005 translation of PA1005Homolog Bit Score 925.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1558 (ORF: BLASTX 677.0), t_PA1005 (ORF: GLIMMER)
GC ORF Sequence
ATGAATGTACTGCGCCCTGCCCTGTTGACGCTCGCCTGCATGCTCGCTTCACCGGTCATGTCGGACGATCTG
CCCTCCCTGGGCGACGCATCTTCCTCGATCGTTTCGCCGGAGCAGGAGTTCCAGCTGGGCCGCGCCTGGCTG
AGCATGCTGCGCAACCAGGTCGATGCGATCTCCGACCCGCAGCTCAAGGACTTCGTCGAAAGCAGCGTCTAC
CGGCTGGCCGAAACCAGCGACCTGCAGGACCACCGGCTGGCCTTCATCCTCATCCGCGACGCACAGATCAAC
GCCTTCGCCGCGCCCGGCGGCGTGATCGGGGTCAACGGCGGGCTACTGCTCAACGCCCAGACCGAAGGCGAG
TATGCCGCGGTGCTGGCCCACGAGCTCGGCCACCTGATCCAGCGCCACTTCGCCCGCGGCATCGAGGCACAG
CAGCGCATGCAACTGCCGGTGATGGCAGCGATGCTCGCCGGCATCGTCGCCGCGGCCGCCGGCGCAGGGGAT
GCGGGTATCGCGGCGATCGCCGGGACCCAGGCGGCGGCGATCCAGAACCAGTTGCGCTTTTCCCGGCAGAAC
GAGCAGGAAGCCGACCGCGTCGGCGTCACCAACATGGTTCGCGCCGGTTACGATCCGCGCTCGATGCCGAAC
ATGTTCGAGCGCCTGGCGCGGCAGTATCGCTACGACGGCAAGCCGCCGGAGTTCCTCCTCACCCACCCGGTC
ACCGAATCGCGTATCGCCGACACCCGCAACCGCGCCGAACAGTATCCCCAGGGCGGCAAGGAAGACAGCCTG
CGCTACCAGCAGATGCGCGCGCGCACTCAGTTGCTCTTCGAGGAAACCCCGGGGATGGCCGGCAAGCGCTTC
CGCGCCATGCTCAACGACAATCCCAAGCTGGATGCCGCGCGCTACGGACTGGCCATCTCGCAGACGCGCATC
GGCCAGCTCAACGATGCCCGTGACAACCTCAGGCAATTGCTGGCGAAGGCACCCAACGACGTGGCCTACAAC
CTGGCCCAGGTCGAGTTGGACATCACCGCCAACCGCCTGCCGGATGCCGACCAGCGGTTGAAGAAGATGCTC
GCCCAGTTCCCCAGCAGCTACCCGCTGAAACAGGTGCGCGCCGACCTGATGCTGAAGATGAGCAAGCCGCAG
GAATCGGAGAAGATCCTCGACGACCTGAGCAAGGCGCGGCCGCTGGACCCGGATGTCTGGAACCGCCTGGCC
GAGGTGCGCAGCCTGACCAACAACGCCATCGGCGTGCACCAGGCCCGGGCCGAGTACCTGTCTCTGACCGGC
GACTACCAGGCCGCCATCGAGCAGCTCGATTTCGCCAAGCGCCGCGCTGGCGGCAACTTCCAACTGGCTGCG
CGACTCGACGCCCGCCAGCAGGAAATTCGCCAGCAGGAAAAGATGGTCAAGGAAATGTTCCGCTGA