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ViewGene |
Locus Name:
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GeneID: |
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Location: |
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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08827.1|AE004957_2 (AE004957) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 949/951 (99%), Positives = 950/951 (99%), Gaps = 1/951 (0%)
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Sequence:
ATGACCGTCCATGTCGAGCCCTTGGCGCTGCCGGGCGGCAGCACCGATGTACTGCGGCTCTACGCCCGCGAA
ATTGCCATCGAGCGTACCCGGCTCCTTTATCTCGGCTCGCGCACGCCGACCCTGCTCATGCTGCTCGGCGGC
GTGACCAGCGCCTGCCTGGTGTGGGGCAAGGTCAGCAGCTGGCTGCTCGGTGGCTGGCTGGTCTGGCTGGTG
TTGCTCGCCGTCCTGCGCCTGCTGCAGGTCGCCGCCTTCCAGCAGGCCGACAGCCGTCGCCAGGCCAGCCGC
CACTGGCGGCGGACCTTCCTGTGCGGCGCCGGCGCCTCGGGCCTGACCCTGGCGTTCGCGGTGATCATGCTG
GTCCCGGCCGATGCCTTCCTCCAGCAGGTGCTGGTGTTCGGCCTGGTGGCGGCGGCGATCCTCTCCGCCAGC
GTCGCCTATGCGGTGAGCCTGCCGGCCTTCCTCACCTTCGCCTTGCCGGGCCTGCTGCCATCCATCGTTTTC
CTGCTGTTACAGCCGCATAGCCTGTTGCAGGGCTGGGGCGTGCTCGGCCTGATCCTGCTGGTGGCGCTGCTG
GTGGTCGCCGGGCAGATCCACCGGCTGGTGCAGGGCGCGCTGCTGCGACGCTTCCAGACCCAGGCGCTGAAC
CTGCACCTGGAGCGCGTCAACGCCGAGGCCGAAGCGCTCAATCGCAAGCTCGCCCAGGAGGTCGGCCAGCGA
CGCCTGGTCGAACGCGAGCTGCGCGCCGCCCGCGATGCCTTGCAGCGCCGGGTGGAGGCGCGCACCGAGGAG
CTTGGCGCGACCAGCCAGGCGCTCAGCCAGAGCGAGGCGCGCCTGGCCATGGCCCTGGAGGCCAGCGAACTG
GGGTTGTGGGACTGGAACCTGGAGAGCGGCCGGGTCCAGCATTCCTATCTCGAGGCGGTCTTCAGCGCCGGG
GACGGTCCCGAGGACTATCGCAGGCTGATCGAAAGCATCCACCCCGGCGACCTGCCGCGTATCCGTCGCGCC
CTCGCCGAACATCTCAAGGGGCGCAGCGAGCTGTACCGGGTGGAGTACCGCGTGCGCGACCGGGAGGGCGGC
TGGCGCTGGCTGGAGGATCGTGGCCGGGCCATGGCTCGCGACCCGCGGGGACGGGTGACGCGGATGCTCGGC
ACGCGCAGCGACATCAGCGCGCGCAAGCGCCTGGAAGAGCAGCAGCAACTGGCCGCGACAGTGTTCGAGGCG
GCCAGCGAGAGCATCGTGATCCTCGATCCGGCCTACAACCTGCTGGCGGTCAACCAGGCCTTCAGTCGCATC
ACCGGCTATCGCCGCGAGGACGTGGTCGGGCGCAACGCCAGCCTGCTGGTGAATACCCCCGAGGCCCAGCGC
CACTACCGGCAGATCCGCGCCGAGCTGCGCCAGCACGGGCAGTGGCAGGGCGAACTGGTGGATACGCGGAAG
AATGGCGATCCCTATCCCCAATGGCTGCAGCTCAACCTGCTGCGCGACGGCAATGGCGAGGCGACCCACATC
GTCGGTTTCTTCACCGATCTCAGTGCCCGCCGCGACGTCGAGGAGCGCCTGCGTCACCTGCTGCACTACGAC
GAACTGACCGGCCTGGCCAACCGCCGGTTGTTCCGCGAGCGGCTGCACGAGGCGGCCCAGCGGGCGCGCCAG
GAGGAGGGCGGGCTGGCCCTGCTGCTGATCGACCTGGACCGCTTCAAGCTGCTCAACGACAGCCTCGGCCAC
GAGGTCGCCGACCAGTTGCTCAGGGAGATGGCCCAGCGCCTGCGGCGCACCGCGCCGGAAGCCAACACCCTG
GCGCGTCTGGCCGGCGACGAGTTCGCCATTCTCCTCGATGGCGGCACCGGCACCGCGGCCCTGTCGCGCCTG
GCCGAACGCCTGCTGGTCCAGTTGCGCCAGCCGGTGAGCGTGCTCGGCCACGAGTTGATCCTCGGCGCCTCG
CTGGGGATCAGCCTGTTTTCCGAGCAAGCACGGGAAATCTCCGTGCTGATGAGCCAGGCGAACCTGGCGATG
CAACATGCCAAGCAACTCGGCGGCAATACCTTCCAGTTCTTCCGCGACAACCTGCAGGACAGCACCCTCGAA
CGCCTGCGCCTGGAAACCCGGTTGCGCAAGGCGGTCGAGGAGGGCCAGCTGGACGTGCATTACCAGCCCAAG
CTGTGCCTGGCCAGCGCCCGCCCGGACTCGGTCGAGGCGCTGGTGCGCTGGCACCATCCGGAGGAGGGCATG
ATCCCGCCGTCGACCTTCATCGGCCTCGCCGAGGAGTGCGGGTTGATCGGCGAGATCGGTGAATTCGTCCTG
CGCCGGGCCTGCCTGCAGGCCGCCGAGTGGAGCCAGCGGGGCCTGAACCTGCGGGTCTCGGTGAACCTCTCG
GTCCACCAGTTGCGCCAGGGCGACCTGCTCGACGTAGTGCGCTCGGCGCTGGCCGACAGCGGCCTGCCGGCG
GCGCAACTGGAGCTGGAGTTGACCGAAAGCCAGTGGCTGGACGCCCTCGATAGTGTCCTGGCGACCTTCCGC
CAGTTGCGCGAGATGGGGGTGAAGCTATCGGTCGACGACTTCGGCACCGGCTATTCCTCGCTCAGCTACCTG
AAGCGCCTGCCGCTGGACTACCTGAAGATCGACCAGTCGTTCGTCCGCGACCTGACCCAGAACAGCGAGGAT
GCGGCGATCATCCGGGCGATCATCGCCATGGCCCACAGCCTCGACCTGAAGGTGGTCGCCGAAGGCGTGGAA
ACCATCGAACAGCGGGACTTCCTGGTGGCCCAGCGTTGCGATGAGCTGCAGGGCTACCTGATCGGCCGGCCG
TTGCCGGCCCATGCCCTGGAGGAAGGTTTGCGCCAGGCTCGTTGA |
Translation:
MTVHVEPLALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGWLVWLV
LLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFLQQVLVFGLVAAAILSAS
VAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLILLVALLVVAGQIHRLVQGALLRRFQTQALN
LHLERVNAEAEALNRKLAQEVGQRRLVERELRAARDALQRRVEARTEELGATSQALSQSEARLAMALEASEL
GLWDWNLESGRVQHSYLEAVFSAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGG
WRWLEDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRI
TGYRREDVVGRNASLLVNTPEAQRHYRQIRAELRQHGQWQGELVDTRKNGDPYPQWLQLNLLRDGNGEATHI
VGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEEGGLALLLIDLDRFKLLNDSLGH
EVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLDGGTGTAALSRLAERLLVQLRQPVSVLGHELILGAS
LGISLFSEQAREISVLMSQANLAMQHAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPK
LCLASARPDSVEALVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLNLRVSVNLS
VHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSVDDFGTGYSSLSYL
KRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGVETIEQRDFLVAQRCDELQGYLIGRP
LPAHALEEGLRQAR* |
AnnotationID:107 | GeneID:97 |
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Modification Date/Time: |
2005-03-17 16:04:38 |
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GeneProduct: | conserved hypothetical protein |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (14) Hypothetical, unclassified, unknown |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN53426.1|AE015481_9 (AE015481) sensory box protein [Shewanella oneidensis MR-1]
Length = 1515
Score = 535 bits (1377), Expect = e-151
Identities = 286/697 (41%), Positives = 432/697 (61%), Gaps = 6/697 (0%)
>gb|AAN66297.1|AE016258_3 (AE016776) sensory box protein [Pseudomonas putida KT2440]
Length = 1276
Score = 476 bits (1226), Expect = e-133
Identities = 252/575 (43%), Positives = 367/575 (63%), Gaps = 5/575 (0%)
>gb|AAO58077.1| (AE016872) sensory box/GGDEF domain/EAL domain protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 1278
Score = 474 bits (1220), Expect = e-132
Identities = 251/575 (43%), Positives = 361/575 (62%), Gaps = 5/575 (0%)
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Homologs By Global Alignment |
Gene ID:97 |
Identity: |
0% |
10% |
20% |
30% |
40% |
50% |
60% |
70% |
80% |
90% |
100% |
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HomologID |
Accession |
Description |
Length |
PctIdentity |
PctSimilarity |
Gaps |
Score |
182 |
PA5442_tr |
translation of PA5442 |
951 |
99.78 |
99.89 |
1 |
4747.0 |
14454 |
gb|AAG08827.1|AE004957_2 |
(AE004957) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] |
951 |
99.78 |
99.89 |
1 |
4747.0 |
14456 |
gb|AAG03674.1|AE004466_8 |
(AE004466) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] |
961 |
32.15 |
46.40 |
212 |
1317.0 |
183 |
PA0285_tr |
translation of PA0285 |
961 |
32.15 |
46.40 |
212 |
1317.0 |
14458 |
gb|AAQ58823.1| |
(AE016913) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] |
1002 |
31.03 |
44.11 |
259 |
1244.0 |
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GC ORFID: 43099 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA5442 | Glimmer Score: |
Start: 5667520 | Stop: 5664668 |
Length: 2853 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA5442 translation of PA5442 | Homolog Bit Score 1832.0 |
Other Homologs: t_PA0285 (ORF: BLASTX 511.0), psyr_15may02_Scaffold6_revised_gene6773 (ORF: BLASTX 457.0), t_PA1727 (ORF: BLASTX 343.0), psyr_15may02_Scaffold1_revised_gene1407 (ORF: BLASTX 339.0), t_PA4367 (ORF: BLASTX 330.0), psyr_15may02_Scaffold12_revised_gene1977 (ORF: BLASTX 320.0), psyr_15may02_Scaffold2_revised_gene4057 (ORF: BLASTX 317.0), t_PA5295 (ORF: BLASTX 311.0), t_PA5442 (ORF: GLIMMER) |
GC ORF Sequence |
ATGACCGTCCATGTCGAGCCCTTGGCGCTGCCGGGCGGCAGCACCGATGTACTGCGGCTCTACGCCCGCGAA ATTGCCATCGAGCGTACCCGGCTCCTTTATCTCGGCTCGCGCACGCCGACCCTGCTCATGCTGCTCGGCGGC GTGACCAGCGCCTGCCTGGTGTGGGGCAAGGTCAGCAGCTGGCTGCTCGGTGGCTGGCTGGTCTGGCTGGTG TTGCTCGCCGTCCTGCGCCTGCTGCAGGTCGCCGCCTTCCAGCAGGCCGACAGCCGTCGCCAGGCCAGCCGC CACTGGCGGCGGACCTTCCTGTGCGGCGCCGGCGCCTCGGGCCTGACCCTGGCGTTCGCGGTGATCATGCTG GTCCCGGCCGATGCCTTCCTCCAGCAGGTGCTGGTGTTCGGCCTGGTGGCGGCGGCGATCCTCTCCGCCAGC GTCGCCTATGCGGTGAGCCTGCCGGCCTTCCTCACCTTCGCCTTGCCGGGCCTGCTGCCATCCATCGTTTTC CTGCTGTTACAGCCGCATAGCCTGTTGCAGGGCTGGGGCGTGCTCGGCCTGATCCTGCTGGTGGCGCTGCTG GTGGTCGCCGGGCAGATCCACCGGCTGGTGCAGGGCGCGCTGCTGCGACGCTTCCAGACCCAGGCGCTGAAC CTGCACCTGGAGCGCGTCAACGCCGAGGCCGAAGCGCTCAATCGCAAGCTCGCCCAGGAGGTCGGCCAGCGA CGCCTGGTCGAACGCGAGCTGCGCGCCGCCCGCGATGCCTTGCAGCGCCGGGTGGAGGCGCGCACCGAGGAG CTTGGCGCGACCAGCCAGGCGCTCAGCCAGAGCGAGGCGCGCCTGGCCATGGCCCTGGAGGCCAGCGAACTG GGGTTGTGGGACTGGAACCTGGAGAGCGGCCGGGTCCAGCATTCCTATCTCGAGGCGGTCTTCAGCGCCGGG GACGGTCCCGAGGACTATCGCAGGCTGATCGAAAGCATCCACCCCGGCGACCTGCCGCGTATCCGTCGCGCC CTCGCCGAACATCTCAAGGGGCGCAGCGAGCTGTACCGGGTGGAGTACCGCGTGCGCGACCGGGAGGGCGGC TGGCGCTGGCTGGAGGATCGTGGCCGGGCCATGGCTCGCGACCCGCGGGGACGGGTGACGCGGATGCTCGGC ACGCGCAGCGACATCAGCGCGCGCAAGCGCCTGGAAGAGCAGCAGCAACTGGCCGCGACAGTGTTCGAGGCG GCCAGCGAGAGCATCGTGATCCTCGATCCGGCCTACAACCTGCTGGCGGTCAACCAGGCCTTCAGTCGCATC ACCGGCTATCGCCGCGAGGACGTGGTCGGGCGCAACGCCAGCCTGCTGGTGAATACCCCCGAGGCCCAGCGC CACTACCGGCAGATCCGCGCCGAGCTGCGCCAGCACGGGCAGTGGCAGGGCGAACTGGTGGATACGCGGAAG AATGGCGATCCCTATCCCCAATGGCTGCAGCTCAACCTGCTGCGCGACGGCAATGGCGAGGCGACCCACATC GTCGGTTTCTTCACCGATCTCAGTGCCCGCCGCGACGTCGAGGAGCGCCTGCGTCACCTGCTGCACTACGAC GAACTGACCGGCCTGGCCAACCGCCGGTTGTTCCGCGAGCGGCTGCACGAGGCGGCCCAGCGGGCGCGCCAG GAGGAGGGCGGGCTGGCCCTGCTGCTGATCGACCTGGACCGCTTCAAGCTGCTCAACGACAGCCTCGGCCAC GAGGTCGCCGACCAGTTGCTCAGGGAGATGGCCCAGCGCCTGCGGCGCACCGCGCCGGAAGCCAACACCCTG GCGCGTCTGGCCGGCGACGAGTTCGCCATTCTCCTCGATGGCGGCACCGGCACCGCGGCCCTGTCGCGCCTG GCCGAACGCCTGCTGGTCCAGTTGCGCCAGCCGGTGAGCGTGCTCGGCCACGAGTTGATCCTCGGCGCCTCG CTGGGGATCAGCCTGTTTTCCGAGCAAGCACGGGAAATCTCCGTGCTGATGAGCCAGGCGAACCTGGCGATG CAACATGCCAAGCAACTCGGCGGCAATACCTTCCAGTTCTTCCGCGACAACCTGCAGGACAGCACCCTCGAA CGCCTGCGCCTGGAAACCCGGTTGCGCAAGGCGGTCGAGGAGGGCCAGCTGGACGTGCATTACCAGCCCAAG CTGTGCCTGGCCAGCGCCCGCCCGGACTCGGTCGAGGCGCTGGTGCGCTGGCACCATCCGGAGGAGGGCATG ATCCCGCCGTCGACCTTCATCGGCCTCGCCGAGGAGTGCGGGTTGATCGGCGAGATCGGTGAATTCGTCCTG CGCCGGGCCTGCCTGCAGGCCGCCGAGTGGAGCCAGCGGGGCCTGAACCTGCGGGTCTCGGTGAACCTCTCG GTCCACCAGTTGCGCCAGGGCGACCTGCTCGACGTAGTGCGCTCGGCGCTGGCCGACAGCGGCCTGCCGGCG GCGCAACTGGAGCTGGAGTTGACCGAAAGCCAGTGGCTGGACGCCCTCGATAGTGTCCTGGCGACCTTCCGC CAGTTGCGCGAGATGGGGGTGAAGCTATCGGTCGACGACTTCGGCACCGGCTATTCCTCGCTCAGCTACCTG AAGCGCCTGCCGCTGGACTACCTGAAGATCGACCAGTCGTTCGTCCGCGACCTGACCCAGAACAGCGAGGAT GCGGCGATCATCCGGGCGATCATCGCCATGGCCCACAGCCTCGACCTGAAGGTGGTCGCCGAAGGCGTGGAA ACCATCGAACAGCGGGACTTCCTGGTGGCCCAGCGTTGCGATGAGCTGCAGGGCTACCTGATCGGCCGGCCG TTGCCGGCCCATGCCCTGGAGGAAGGTTTGCGCCAGGCTCGTTGA |
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