ViewGene

Locus Name:
GeneID:
Location:

GeneID:97
TrivialName: PA14_71850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71850
PAO1 Ortholog Locus:PA5442
Sequence Length:2853
Protein Length:950
Start: 6403831
Stop: 6400979
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08827.1|AE004957_2 (AE004957) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 949/951 (99%), Positives = 950/951 (99%), Gaps = 1/951 (0%)
Sequence:
ATGACCGTCCATGTCGAGCCCTTGGCGCTGCCGGGCGGCAGCACCGATGTACTGCGGCTCTACGCCCGCGAA
ATTGCCATCGAGCGTACCCGGCTCCTTTATCTCGGCTCGCGCACGCCGACCCTGCTCATGCTGCTCGGCGGC
GTGACCAGCGCCTGCCTGGTGTGGGGCAAGGTCAGCAGCTGGCTGCTCGGTGGCTGGCTGGTCTGGCTGGTG
TTGCTCGCCGTCCTGCGCCTGCTGCAGGTCGCCGCCTTCCAGCAGGCCGACAGCCGTCGCCAGGCCAGCCGC
CACTGGCGGCGGACCTTCCTGTGCGGCGCCGGCGCCTCGGGCCTGACCCTGGCGTTCGCGGTGATCATGCTG
GTCCCGGCCGATGCCTTCCTCCAGCAGGTGCTGGTGTTCGGCCTGGTGGCGGCGGCGATCCTCTCCGCCAGC
GTCGCCTATGCGGTGAGCCTGCCGGCCTTCCTCACCTTCGCCTTGCCGGGCCTGCTGCCATCCATCGTTTTC
CTGCTGTTACAGCCGCATAGCCTGTTGCAGGGCTGGGGCGTGCTCGGCCTGATCCTGCTGGTGGCGCTGCTG
GTGGTCGCCGGGCAGATCCACCGGCTGGTGCAGGGCGCGCTGCTGCGACGCTTCCAGACCCAGGCGCTGAAC
CTGCACCTGGAGCGCGTCAACGCCGAGGCCGAAGCGCTCAATCGCAAGCTCGCCCAGGAGGTCGGCCAGCGA
CGCCTGGTCGAACGCGAGCTGCGCGCCGCCCGCGATGCCTTGCAGCGCCGGGTGGAGGCGCGCACCGAGGAG
CTTGGCGCGACCAGCCAGGCGCTCAGCCAGAGCGAGGCGCGCCTGGCCATGGCCCTGGAGGCCAGCGAACTG
GGGTTGTGGGACTGGAACCTGGAGAGCGGCCGGGTCCAGCATTCCTATCTCGAGGCGGTCTTCAGCGCCGGG
GACGGTCCCGAGGACTATCGCAGGCTGATCGAAAGCATCCACCCCGGCGACCTGCCGCGTATCCGTCGCGCC
CTCGCCGAACATCTCAAGGGGCGCAGCGAGCTGTACCGGGTGGAGTACCGCGTGCGCGACCGGGAGGGCGGC
TGGCGCTGGCTGGAGGATCGTGGCCGGGCCATGGCTCGCGACCCGCGGGGACGGGTGACGCGGATGCTCGGC
ACGCGCAGCGACATCAGCGCGCGCAAGCGCCTGGAAGAGCAGCAGCAACTGGCCGCGACAGTGTTCGAGGCG
GCCAGCGAGAGCATCGTGATCCTCGATCCGGCCTACAACCTGCTGGCGGTCAACCAGGCCTTCAGTCGCATC
ACCGGCTATCGCCGCGAGGACGTGGTCGGGCGCAACGCCAGCCTGCTGGTGAATACCCCCGAGGCCCAGCGC
CACTACCGGCAGATCCGCGCCGAGCTGCGCCAGCACGGGCAGTGGCAGGGCGAACTGGTGGATACGCGGAAG
AATGGCGATCCCTATCCCCAATGGCTGCAGCTCAACCTGCTGCGCGACGGCAATGGCGAGGCGACCCACATC
GTCGGTTTCTTCACCGATCTCAGTGCCCGCCGCGACGTCGAGGAGCGCCTGCGTCACCTGCTGCACTACGAC
GAACTGACCGGCCTGGCCAACCGCCGGTTGTTCCGCGAGCGGCTGCACGAGGCGGCCCAGCGGGCGCGCCAG
GAGGAGGGCGGGCTGGCCCTGCTGCTGATCGACCTGGACCGCTTCAAGCTGCTCAACGACAGCCTCGGCCAC
GAGGTCGCCGACCAGTTGCTCAGGGAGATGGCCCAGCGCCTGCGGCGCACCGCGCCGGAAGCCAACACCCTG
GCGCGTCTGGCCGGCGACGAGTTCGCCATTCTCCTCGATGGCGGCACCGGCACCGCGGCCCTGTCGCGCCTG
GCCGAACGCCTGCTGGTCCAGTTGCGCCAGCCGGTGAGCGTGCTCGGCCACGAGTTGATCCTCGGCGCCTCG
CTGGGGATCAGCCTGTTTTCCGAGCAAGCACGGGAAATCTCCGTGCTGATGAGCCAGGCGAACCTGGCGATG
CAACATGCCAAGCAACTCGGCGGCAATACCTTCCAGTTCTTCCGCGACAACCTGCAGGACAGCACCCTCGAA
CGCCTGCGCCTGGAAACCCGGTTGCGCAAGGCGGTCGAGGAGGGCCAGCTGGACGTGCATTACCAGCCCAAG
CTGTGCCTGGCCAGCGCCCGCCCGGACTCGGTCGAGGCGCTGGTGCGCTGGCACCATCCGGAGGAGGGCATG
ATCCCGCCGTCGACCTTCATCGGCCTCGCCGAGGAGTGCGGGTTGATCGGCGAGATCGGTGAATTCGTCCTG
CGCCGGGCCTGCCTGCAGGCCGCCGAGTGGAGCCAGCGGGGCCTGAACCTGCGGGTCTCGGTGAACCTCTCG
GTCCACCAGTTGCGCCAGGGCGACCTGCTCGACGTAGTGCGCTCGGCGCTGGCCGACAGCGGCCTGCCGGCG
GCGCAACTGGAGCTGGAGTTGACCGAAAGCCAGTGGCTGGACGCCCTCGATAGTGTCCTGGCGACCTTCCGC
CAGTTGCGCGAGATGGGGGTGAAGCTATCGGTCGACGACTTCGGCACCGGCTATTCCTCGCTCAGCTACCTG
AAGCGCCTGCCGCTGGACTACCTGAAGATCGACCAGTCGTTCGTCCGCGACCTGACCCAGAACAGCGAGGAT
GCGGCGATCATCCGGGCGATCATCGCCATGGCCCACAGCCTCGACCTGAAGGTGGTCGCCGAAGGCGTGGAA
ACCATCGAACAGCGGGACTTCCTGGTGGCCCAGCGTTGCGATGAGCTGCAGGGCTACCTGATCGGCCGGCCG
TTGCCGGCCCATGCCCTGGAGGAAGGTTTGCGCCAGGCTCGTTGA
Translation:
MTVHVEPLALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGWLVWLV
LLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFLQQVLVFGLVAAAILSAS
VAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLILLVALLVVAGQIHRLVQGALLRRFQTQALN
LHLERVNAEAEALNRKLAQEVGQRRLVERELRAARDALQRRVEARTEELGATSQALSQSEARLAMALEASEL
GLWDWNLESGRVQHSYLEAVFSAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGG
WRWLEDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRI
TGYRREDVVGRNASLLVNTPEAQRHYRQIRAELRQHGQWQGELVDTRKNGDPYPQWLQLNLLRDGNGEATHI
VGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEEGGLALLLIDLDRFKLLNDSLGH
EVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLDGGTGTAALSRLAERLLVQLRQPVSVLGHELILGAS
LGISLFSEQAREISVLMSQANLAMQHAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPK
LCLASARPDSVEALVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLNLRVSVNLS
VHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSVDDFGTGYSSLSYL
KRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGVETIEQRDFLVAQRCDELQGYLIGRP
LPAHALEEGLRQAR*
AnnotationID:107GeneID:97
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 16:04:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5442
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN53426.1|AE015481_9 (AE015481) sensory box protein [Shewanella oneidensis MR-1]
          Length = 1515

 Score =  535 bits (1377), Expect = e-151
 Identities = 286/697 (41%), Positives = 432/697 (61%), Gaps = 6/697 (0%)

>gb|AAN66297.1|AE016258_3 (AE016776) sensory box protein [Pseudomonas putida KT2440]
          Length = 1276

 Score =  476 bits (1226), Expect = e-133
 Identities = 252/575 (43%), Positives = 367/575 (63%), Gaps = 5/575 (0%)

>gb|AAO58077.1| (AE016872) sensory box/GGDEF domain/EAL domain protein [Pseudomonas
            syringae pv. tomato str. DC3000]
          Length = 1278

 Score =  474 bits (1220), Expect = e-132
 Identities = 251/575 (43%), Positives = 361/575 (62%), Gaps = 5/575 (0%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:197
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17339
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34645
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:97_cdd.html
URL:
Homologs By Global Alignment
Gene ID:97

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
182 PA5442_tr translation of PA5442 951 99.78 99.89 1 4747.0
14454 gb|AAG08827.1|AE004957_2 (AE004957) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 951 99.78 99.89 1 4747.0
14456 gb|AAG03674.1|AE004466_8 (AE004466) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 961 32.15 46.40 212 1317.0
183 PA0285_tr translation of PA0285 961 32.15 46.40 212 1317.0
14458 gb|AAQ58823.1| (AE016913) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 1002 31.03 44.11 259 1244.0
GC ORFID: 43099How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5442Glimmer Score:
Start: 5667520Stop: 5664668
Length: 2853
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5442 translation of PA5442Homolog Bit Score 1832.0
Other Homologs: t_PA0285 (ORF: BLASTX 511.0), psyr_15may02_Scaffold6_revised_gene6773 (ORF: BLASTX 457.0), t_PA1727 (ORF: BLASTX 343.0), psyr_15may02_Scaffold1_revised_gene1407 (ORF: BLASTX 339.0), t_PA4367 (ORF: BLASTX 330.0), psyr_15may02_Scaffold12_revised_gene1977 (ORF: BLASTX 320.0), psyr_15may02_Scaffold2_revised_gene4057 (ORF: BLASTX 317.0), t_PA5295 (ORF: BLASTX 311.0), t_PA5442 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGTCCATGTCGAGCCCTTGGCGCTGCCGGGCGGCAGCACCGATGTACTGCGGCTCTACGCCCGCGAA
ATTGCCATCGAGCGTACCCGGCTCCTTTATCTCGGCTCGCGCACGCCGACCCTGCTCATGCTGCTCGGCGGC
GTGACCAGCGCCTGCCTGGTGTGGGGCAAGGTCAGCAGCTGGCTGCTCGGTGGCTGGCTGGTCTGGCTGGTG
TTGCTCGCCGTCCTGCGCCTGCTGCAGGTCGCCGCCTTCCAGCAGGCCGACAGCCGTCGCCAGGCCAGCCGC
CACTGGCGGCGGACCTTCCTGTGCGGCGCCGGCGCCTCGGGCCTGACCCTGGCGTTCGCGGTGATCATGCTG
GTCCCGGCCGATGCCTTCCTCCAGCAGGTGCTGGTGTTCGGCCTGGTGGCGGCGGCGATCCTCTCCGCCAGC
GTCGCCTATGCGGTGAGCCTGCCGGCCTTCCTCACCTTCGCCTTGCCGGGCCTGCTGCCATCCATCGTTTTC
CTGCTGTTACAGCCGCATAGCCTGTTGCAGGGCTGGGGCGTGCTCGGCCTGATCCTGCTGGTGGCGCTGCTG
GTGGTCGCCGGGCAGATCCACCGGCTGGTGCAGGGCGCGCTGCTGCGACGCTTCCAGACCCAGGCGCTGAAC
CTGCACCTGGAGCGCGTCAACGCCGAGGCCGAAGCGCTCAATCGCAAGCTCGCCCAGGAGGTCGGCCAGCGA
CGCCTGGTCGAACGCGAGCTGCGCGCCGCCCGCGATGCCTTGCAGCGCCGGGTGGAGGCGCGCACCGAGGAG
CTTGGCGCGACCAGCCAGGCGCTCAGCCAGAGCGAGGCGCGCCTGGCCATGGCCCTGGAGGCCAGCGAACTG
GGGTTGTGGGACTGGAACCTGGAGAGCGGCCGGGTCCAGCATTCCTATCTCGAGGCGGTCTTCAGCGCCGGG
GACGGTCCCGAGGACTATCGCAGGCTGATCGAAAGCATCCACCCCGGCGACCTGCCGCGTATCCGTCGCGCC
CTCGCCGAACATCTCAAGGGGCGCAGCGAGCTGTACCGGGTGGAGTACCGCGTGCGCGACCGGGAGGGCGGC
TGGCGCTGGCTGGAGGATCGTGGCCGGGCCATGGCTCGCGACCCGCGGGGACGGGTGACGCGGATGCTCGGC
ACGCGCAGCGACATCAGCGCGCGCAAGCGCCTGGAAGAGCAGCAGCAACTGGCCGCGACAGTGTTCGAGGCG
GCCAGCGAGAGCATCGTGATCCTCGATCCGGCCTACAACCTGCTGGCGGTCAACCAGGCCTTCAGTCGCATC
ACCGGCTATCGCCGCGAGGACGTGGTCGGGCGCAACGCCAGCCTGCTGGTGAATACCCCCGAGGCCCAGCGC
CACTACCGGCAGATCCGCGCCGAGCTGCGCCAGCACGGGCAGTGGCAGGGCGAACTGGTGGATACGCGGAAG
AATGGCGATCCCTATCCCCAATGGCTGCAGCTCAACCTGCTGCGCGACGGCAATGGCGAGGCGACCCACATC
GTCGGTTTCTTCACCGATCTCAGTGCCCGCCGCGACGTCGAGGAGCGCCTGCGTCACCTGCTGCACTACGAC
GAACTGACCGGCCTGGCCAACCGCCGGTTGTTCCGCGAGCGGCTGCACGAGGCGGCCCAGCGGGCGCGCCAG
GAGGAGGGCGGGCTGGCCCTGCTGCTGATCGACCTGGACCGCTTCAAGCTGCTCAACGACAGCCTCGGCCAC
GAGGTCGCCGACCAGTTGCTCAGGGAGATGGCCCAGCGCCTGCGGCGCACCGCGCCGGAAGCCAACACCCTG
GCGCGTCTGGCCGGCGACGAGTTCGCCATTCTCCTCGATGGCGGCACCGGCACCGCGGCCCTGTCGCGCCTG
GCCGAACGCCTGCTGGTCCAGTTGCGCCAGCCGGTGAGCGTGCTCGGCCACGAGTTGATCCTCGGCGCCTCG
CTGGGGATCAGCCTGTTTTCCGAGCAAGCACGGGAAATCTCCGTGCTGATGAGCCAGGCGAACCTGGCGATG
CAACATGCCAAGCAACTCGGCGGCAATACCTTCCAGTTCTTCCGCGACAACCTGCAGGACAGCACCCTCGAA
CGCCTGCGCCTGGAAACCCGGTTGCGCAAGGCGGTCGAGGAGGGCCAGCTGGACGTGCATTACCAGCCCAAG
CTGTGCCTGGCCAGCGCCCGCCCGGACTCGGTCGAGGCGCTGGTGCGCTGGCACCATCCGGAGGAGGGCATG
ATCCCGCCGTCGACCTTCATCGGCCTCGCCGAGGAGTGCGGGTTGATCGGCGAGATCGGTGAATTCGTCCTG
CGCCGGGCCTGCCTGCAGGCCGCCGAGTGGAGCCAGCGGGGCCTGAACCTGCGGGTCTCGGTGAACCTCTCG
GTCCACCAGTTGCGCCAGGGCGACCTGCTCGACGTAGTGCGCTCGGCGCTGGCCGACAGCGGCCTGCCGGCG
GCGCAACTGGAGCTGGAGTTGACCGAAAGCCAGTGGCTGGACGCCCTCGATAGTGTCCTGGCGACCTTCCGC
CAGTTGCGCGAGATGGGGGTGAAGCTATCGGTCGACGACTTCGGCACCGGCTATTCCTCGCTCAGCTACCTG
AAGCGCCTGCCGCTGGACTACCTGAAGATCGACCAGTCGTTCGTCCGCGACCTGACCCAGAACAGCGAGGAT
GCGGCGATCATCCGGGCGATCATCGCCATGGCCCACAGCCTCGACCTGAAGGTGGTCGCCGAAGGCGTGGAA
ACCATCGAACAGCGGGACTTCCTGGTGGCCCAGCGTTGCGATGAGCTGCAGGGCTACCTGATCGGCCGGCCG
TTGCCGGCCCATGCCCTGGAGGAAGGTTTGCGCCAGGCTCGTTGA