ViewGene
Locus Name:
GeneID:
Location:

GeneID:969
TrivialName: PA14_65850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65850
PAO1 Ortholog Locus:PA4981
Sequence Length:1413
Protein Length:470
Start: 5866492
Stop: 5865080
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08366.1|AE004911_1 (AE004911) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 467/470 (99%), Positives = 470/470 (100%)
Sequence:
ATGGCTGACGGCAAGGAAAGGCTGCAACTCACCCGGGCCCTGGCGAGCCGCCACATCTTCATGCTGTCCCTC
GGCGGGGTGATCGGCACCGGGCTGTTCATGGGCTCCGGCGTGACCATCAACCAGGGCGGCCCGGCCGGCGCG
GTGCTGGCCTACCTGGTGGCCGGGGTGCTGATGTACCTGGTGATGGTCTGCCTCGGCGAGCTGTCGGTGCAG
ATGCCGGTCTCCGGTTCGTTCCAGGCCCACGCGACGCGTTTCATCGGCCCGGCGACCGGCTTCATGATCGGC
TGGGTCTACTGGATGAGCTGGGCCTCCACGGTAGGCCTGGAATTCACCGCGGCCGGGATGCTCATGACCCGC
TGGTTCCCGGAGGTGCCCGTGTGGCTATGGTCGGGTTTCTTCGTGGTCGTGCTGTTCTCCCTCAATGCCCTG
GCGACCCGCGCCTTCGGCGAGGCCGAGTACTGGTTCGCCGGGATCAAGGTGGCGGCGATCCTGGTGTTCATC
GTGGTCGGGGGGCTGGTGATCTTCGGCGGTATCGAACTGAAGAGCGGTGCGCCGGCGCCGATGTTCTCCAAC
CTGGTCGGCGAGCGGCTGTTCCCCAACGGGCTGTCGGCGGTGTTCGCGGTGATGATGACGGTGGTCTATGCC
TTCCAGGGTTGCGAGATCATGGGCGTCGCCGCCGGCGAGACCGAGCGACCGGAGAAGAGCATCCCGCGGGCG
GTGCGCAACGTGGTGTTCCGCGTGCTGATCTTCTACGTGCTGGCCATCGTTGTGCTTTCCGCCATCATTCCC
TGGCAACAGGCCGGGCTGGTGGAAAGCCCGTTCGTGCAGGTGTTCGACATGGTCGGGATTCCCTACGCGGCG
GACCTGATGAACTTCGTCATCCTCACCGCCATCCTCTCGGTAGGCAACTCGGGCCTGTACGCCTCGACGCGG
ATCCTCTGGGCGATGTCCAGGACCGGCATGGCCCCGCGCGGCCTGTCGAAGCTCAGCGCGCGCGGCGTGCCG
CTCTACGCGTTGCTGATCACCCTGTGCTTCGCCCTGCTCTCGTTGCTGACCAGCGTGATCGCCGCCGACACC
CTGTTCATGGTGCTGATGGCGGTGAGCGGGATGTCCGGCACCGTCACCTGGATCGTCATCGCCTACGCCCAA
TACCGCTTCCGCCGCGAGCACATGGCCAGCGGCGGCACGGTCGCCGAGCTGAAATATGCCGCGCCGCTGTTC
CCGCTGGTGCCGCTGGCCTGCATCGCCGTGTGCTGCTCGCTGTTCGTCTTCCTCGCCCTCGATCCCACCCAG
CGGCCGTCCTTGTACTGGGGCTTCGGCTTCATCGCCGCCTGCTACCTGGCCTATTACGTGGTTCGTCGCCGG
CAGCCGCAGGGACTGGGCGACCCCGCCCTGGGACGGGCCGGCTGA
Translation:
MADGKERLQLTRALASRHIFMLSLGGVIGTGLFMGSGVTINQGGPAGAVLAYLVAGVLMYLVMVCLGELSVQ
MPVSGSFQAHATRFIGPATGFMIGWVYWMSWASTVGLEFTAAGMLMTRWFPEVPVWLWSGFFVVVLFSLNAL
ATRAFGEAEYWFAGIKVAAILVFIVVGGLVIFGGIELKSGAPAPMFSNLVGERLFPNGLSAVFAVMMTVVYA
FQGCEIMGVAAGETERPEKSIPRAVRNVVFRVLIFYVLAIVVLSAIIPWQQAGLVESPFVQVFDMVGIPYAA
DLMNFVILTAILSVGNSGLYASTRILWAMSRTGMAPRGLSKLSARGVPLYALLITLCFALLSLLTSVIAADT
LFMVLMAVSGMSGTVTWIVIAYAQYRFRREHMASGGTVAELKYAAPLFPLVPLACIAVCCSLFVFLALDPTQ
RPSLYWGFGFIAACYLAYYVVRRRQPQGLGDPALGRAG*
AnnotationID:978GeneID:969
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 07:07:18
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid ABC transporter, permease protein
Cell Localization:()
Synonyms:rocE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1113,COG0833,pfam00324
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69323.1|AE016569_7 (AE016788) amino acid transporter, AAT family [Pseudomonas putida
           KT2440]
          Length = 468

 Score =  776 bits (2005), Expect = 0.0
 Identities = 390/465 (83%), Positives = 419/465 (90%), Gaps = 1/465 (0%)

>gb|AAP24660.1| (AE017026) amino acid ABC transporter, permease protein [Bacillus
           anthracis str. Ames]
          Length = 475

 Score =  535 bits (1377), Expect = e-151
 Identities = 243/450 (54%), Positives = 341/450 (75%), Gaps = 1/450 (0%)

>gb|AAP07660.1| (AE017000) Arginine permease [Bacillus cereus ATCC 14579]
          Length = 475

 Score =  533 bits (1373), Expect = e-151
 Identities = 242/450 (53%), Positives = 340/450 (75%), Gaps = 1/450 (0%)






 
Structural Features:
COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 541 residues,  86.5% aligned
Score =  502 bits (1294), Expect = 4e-143
Identities = 192/472 (40%), Positives = 293/472 (62%), Gaps = 22/472 (4%)

COG1113, AnsP, Gamma-aminobutyrate permease and related permeases 
[Amino acid transport and metabolism]
CD-Length = 462 residues,  97.4% aligned
Score =  394 bits (1013), Expect = 1e-110
Identities = 187/456 (41%), Positives = 290/456 (63%), Gaps = 7/456 (1%)

pfam00324, AA_permease, Amino acid permease.
CD-Length = 473 residues,  95.8% aligned
Score =  277 bits (710), Expect = 2e-75
Identities = 174/453 (38%), Positives = 269/453 (59%), Gaps = 17/453 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1941




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19083




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35093




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:969_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:969
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1731
                           PA4981_tr
                           translation of PA4981
                           470
                           99.36
                           99.99
                           0
                           2393.0
     

     
     
61281
                           gb|AAG08366.1|AE004911_1
                           (AE004911) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           470
                           99.36
                           99.99
                           0
                           2393.0
     

     
     
61282
                           gb|AAN69323.1|AE016569_7
                           (AE016788) amino acid transporter, AAT family [Pseudomonas putida KT2440]
                           470
                           82.97
                           89.14
                           2
                           2002.0
     

     
     
61288
                           gb|AAP09927.1|
                           (AE017007) Arginine permease [Bacillus cereus ATCC 14579]
                           474
                           52.10
                           73.20
                           4
                           1350.0
     

     
     
61287
                           dbj|BAA11292.1|
                           (D78193) amino acid permease [Bacillus subtilis]
                           474
                           51.89
                           72.57
                           11
                           1356.0
     

     






      

          
GC ORFID: 43971How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4981Glimmer Score: 

          
Start: 5130175Stop: 5128763

          
Length: 1413


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4981 translation of PA4981Homolog Bit Score 926.0

          
Other Homologs:  t_PA4628 (ORF: BLASTX 374.0), t_PA4981 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGACGGCAAGGAAAGGCTGCAACTCACCCGGGCCCTGGCGAGCCGCCACATCTTCATGCTGTCCCTC 
GGCGGGGTGATCGGCACCGGGCTGTTCATGGGCTCCGGCGTGACCATCAACCAGGGCGGCCCGGCCGGCGCG 
GTGCTGGCCTACCTGGTGGCCGGGGTGCTGATGTACCTGGTGATGGTCTGCCTCGGCGAGCTGTCGGTGCAG 
ATGCCGGTCTCCGGTTCGTTCCAGGCCCACGCGACGCGTTTCATCGGCCCGGCGACCGGCTTCATGATCGGC 
TGGGTCTACTGGATGAGCTGGGCCTCCACGGTAGGCCTGGAATTCACCGCGGCCGGGATGCTCATGACCCGC 
TGGTTCCCGGAGGTGCCCGTGTGGCTATGGTCGGGTTTCTTCGTGGTCGTGCTGTTCTCCCTCAATGCCCTG 
GCGACCCGCGCCTTCGGCGAGGCCGAGTACTGGTTCGCCGGGATCAAGGTGGCGGCGATCCTGGTGTTCATC 
GTGGTCGGGGGGCTGGTGATCTTCGGCGGTATCGAACTGAAGAGCGGTGCGCCGGCGCCGATGTTCTCCAAC 
CTGGTCGGCGAGCGGCTGTTCCCCAACGGGCTGTCGGCGGTGTTCGCGGTGATGATGACGGTGGTCTATGCC 
TTCCAGGGTTGCGAGATCATGGGCGTCGCCGCCGGCGAGACCGAGCGACCGGAGAAGAGCATCCCGCGGGCG 
GTGCGCAACGTGGTGTTCCGCGTGCTGATCTTCTACGTGCTGGCCATCGTTGTGCTTTCCGCCATCATTCCC 
TGGCAACAGGCCGGGCTGGTGGAAAGCCCGTTCGTGCAGGTGTTCGACATGGTCGGGATTCCCTACGCGGCG 
GACCTGATGAACTTCGTCATCCTCACCGCCATCCTCTCGGTAGGCAACTCGGGCCTGTACGCCTCGACGCGG 
ATCCTCTGGGCGATGTCCAGGACCGGCATGGCCCCGCGCGGCCTGTCGAAGCTCAGCGCGCGCGGCGTGCCG 
CTCTACGCGTTGCTGATCACCCTGTGCTTCGCCCTGCTCTCGTTGCTGACCAGCGTGATCGCCGCCGACACC 
CTGTTCATGGTGCTGATGGCGGTGAGCGGGATGTCCGGCACCGTCACCTGGATCGTCATCGCCTACGCCCAA 
TACCGCTTCCGCCGCGAGCACATGGCCAGCGGCGGCACGGTCGCCGAGCTGAAATATGCCGCGCCGCTGTTC 
CCGCTGGTGCCGCTGGCCTGCATCGCCGTGTGCTGCTCGCTGTTCGTCTTCCTCGCCCTCGATCCCACCCAG 
CGGCCGTCCTTGTACTGGGGCTTCGGCTTCATCGCCGCCTGCTACCTGGCCTATTACGTGGTTCGTCGCCGG 
CAGCCGCAGGGACTGGGCGACCCCGCCCTGGGACGGGCCGGCTGA