ViewGene
Locus Name:
GeneID:
Location:

GeneID:966
TrivialName: PA14_48850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48850
PAO1 Ortholog Locus:PA1194
Sequence Length:1419
Protein Length:472
Start: 4342119
Stop: 4343537
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04583.1|AE004549_10 (AE004549) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 470/472 (99%), Positives = 471/472 (99%)
Sequence:
ATGGCCGATTCGGACAAGGGAAAACTGGGGCTGCCGGCGCTGACCGCGCTGGTGGTAGGCGGCATCATCGGC
AGCGGTATCTTCAGCCTGCCGCAGAACATGGCCGAAGGCGCAGGCGCCGGCGCGATCCTGATCGCCTGGGCG
ATCACCTTCGTCGGCATGCTGACCCTGACGCGGATATTCCAGTGGCTGTCGACCACCCGCCCCGAACTGGAC
GACGGCGTCTACGGCTACGCCCGCGAAGGCTTCGGCGAATACCTGGGGTTCAATGCTGCCTGGGGCTACTGG
ATTTCCGCCTGGGTCGGCAACGCCGGCTACCTGGTGGTGCTGTTCAGCGCCCTCGGCTCGTTCGGCGCGCTG
GCCTTCTTCGGCGACGGAACCACCTGGCCGGCGCTGCTCGGCGAATTGACGGTGCTCTGGCTGATGCATGCC
TTCGTCCTCCACGGCGTGCACAACGCGGCGATCACCAACGCCATCGTGACCCTCGCCAAGGTGGTGCCGATC
GCCCTGTTCATCCTCTGCGTAGCCCTGGCCTTCCGCATCGAGACCTTTCACCTGGACTTCTGGGGCAGCCCG
GCCCTGGGCAGCGTCACCCGCCAGGTGGAAACCACCATGCTCTACACCGTCTGGGTATTCCTCGGCATCGAG
AGCGCCACGGTCTATGCCAGCCACGCGCGGCACGCGGCCGATGTCAGCCGTGCAACCCTGCTCGGCTTCGTG
GTCACCCTGCTGTTGCTGGTCTGCGTCTCGGTGCTGTCGCTGGGCGTGGTGCCGCAGCACGAACTGGCGCAG
ATGAAGAACCCCTCGATGGCCCAGGTGATGGCCGCGGCGGTGGGCCCCTGGGGCGCCACGCTGATCAACGTC
GGGCTGATCGTTTCGGTCGGCGGCGCGCTGCTGGCCTGGACCATGCTCGCGGTGGAAATGCTCTACCTGGCC
AGCCGTGGCCCAACGCACACCGCGCCGGCACTGTTCGGCCGCACCAATGCGGTGGAAACCCCAGCGCCGGCA
CTGTGGCTGACCAGCACGCTGATCTCTGCGCTGCTGCTGGTGGCCTTCCTCAACGCCTCGGGCTACAACGCA
CTGATCCAGTTGGCCACCTCGATGGCGCTGATCCCCTACCTGCTCTGCGCCGGCTTCTGCCTGAAGCTGGTG
GCGCGCCGCCCGCACTCGGGCGCGATGCTGGCGCTGGCGCTGTTGGGGACGCTCTACGGGGTCTGGCTGATC
TACGCCGCCGGGCTGAAATACCTGCTGCTGTCGATGATCCTCTACGCGCCGGGCCTCGGCTTCTTCCTGCAT
GCCCGTCGCCAGCGCGACCTGCCGGCGTTCGGCAATCGCGCCGAAGGCAGCGTCGCGGCGCTGGTGCTGGTC
CTCGCGCTGGCGGCGCTGTGGATGATCGGCAGCGGTCGGCTGAGCCTCTAG
Translation:
MADSDKGKLGLPALTALVVGGIIGSGIFSLPQNMAEGAGAGAILIAWAITFVGMLTLTRIFQWLSTTRPELD
DGVYGYAREGFGEYLGFNAAWGYWISAWVGNAGYLVVLFSALGSFGALAFFGDGTTWPALLGELTVLWLMHA
FVLHGVHNAAITNAIVTLAKVVPIALFILCVALAFRIETFHLDFWGSPALGSVTRQVETTMLYTVWVFLGIE
SATVYASHARHAADVSRATLLGFVVTLLLLVCVSVLSLGVVPQHELAQMKNPSMAQVMAAAVGPWGATLINV
GLIVSVGGALLAWTMLAVEMLYLASRGPTHTAPALFGRTNAVETPAPALWLTSTLISALLLVAFLNASGYNA
LIQLATSMALIPYLLCAGFCLKLVARRPHSGAMLALALLGTLYGVWLIYAAGLKYLLLSMILYAPGLGFFLH
ARRQRDLPAFGNRAEGSVAALVLVLALAALWMIGSGRLSL*
AnnotationID:975GeneID:966
AnnotatorUID: danlee
Modification Date/Time: 2003-12-04 16:04:13
Gene Name:
Confidence Code:3
GeneProduct:probable amino acid permease
Cell Localization:(4) Inner membrane protein
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identities = 470/472 (99%), Positives = 471/472 (99%) with PA1194 of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1935




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19077




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:966
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1712
                           PA1194_tr
                           translation of PA1194
                           472
                           99.57
                           99.78
                           0
                           2392.0
     

     
     
60710
                           gb|AAG04583.1|AE004549_10
                           (AE004549) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           472
                           99.57
                           99.78
                           0
                           2392.0
     

     
     
60711
                           gb|AAQ61445.1|
                           (AE016923) arginine/ornithine antiporter [Chromobacterium violaceum ATCC 12472]
                           479
                           55.74
                           71.81
                           13
                           1337.0
     

     
     
60712
                           gb|AAN66627.1|AE016290_5
                           (AE016777) arginine/ornithine antiporter [Pseudomonas putida KT2440]
                           481
                           49.89
                           66.52
                           15
                           1187.0
     

     
     
60715
                           gb|AAN66628.1|AE016290_6
                           (AE016777) arginine/ornithine antiporter [Pseudomonas putida KT2440]
                           483
                           49.48
                           64.59
                           19
                           1124.0
     

     






      

          
GC ORFID: 43968How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1194Glimmer Score: 

          
Start: 611789Stop: 610371

          
Length: 1419


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1194 translation of PA1194Homolog Bit Score 926.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6690 (ORF: BLASTX 452.0), t_PA5170 (ORF: BLASTX 436.0), t_PA1194 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGATTCGGACAAGGGAAAACTGGGGCTGCCGGCGCTGACCGCGCTGGTGGTAGGCGGCATCATCGGC 
AGCGGTATCTTCAGCCTGCCGCAGAACATGGCCGAAGGCGCAGGCGCCGGCGCGATCCTGATCGCCTGGGCG 
ATCACCTTCGTCGGCATGCTGACCCTGACGCGGATATTCCAGTGGCTGTCGACCACCCGCCCCGAACTGGAC 
GACGGCGTCTACGGCTACGCCCGCGAAGGCTTCGGCGAATACCTGGGGTTCAATGCTGCCTGGGGCTACTGG 
ATTTCCGCCTGGGTCGGCAACGCCGGCTACCTGGTGGTGCTGTTCAGCGCCCTCGGCTCGTTCGGCGCGCTG 
GCCTTCTTCGGCGACGGAACCACCTGGCCGGCGCTGCTCGGCGAATTGACGGTGCTCTGGCTGATGCATGCC 
TTCGTCCTCCACGGCGTGCACAACGCGGCGATCACCAACGCCATCGTGACCCTCGCCAAGGTGGTGCCGATC 
GCCCTGTTCATCCTCTGCGTAGCCCTGGCCTTCCGCATCGAGACCTTTCACCTGGACTTCTGGGGCAGCCCG 
GCCCTGGGCAGCGTCACCCGCCAGGTGGAAACCACCATGCTCTACACCGTCTGGGTATTCCTCGGCATCGAG 
AGCGCCACGGTCTATGCCAGCCACGCGCGGCACGCGGCCGATGTCAGCCGTGCAACCCTGCTCGGCTTCGTG 
GTCACCCTGCTGTTGCTGGTCTGCGTCTCGGTGCTGTCGCTGGGCGTGGTGCCGCAGCACGAACTGGCGCAG 
ATGAAGAACCCCTCGATGGCCCAGGTGATGGCCGCGGCGGTGGGCCCCTGGGGCGCCACGCTGATCAACGTC 
GGGCTGATCGTTTCGGTCGGCGGCGCGCTGCTGGCCTGGACCATGCTCGCGGTGGAAATGCTCTACCTGGCC 
AGCCGTGGCCCAACGCACACCGCGCCGGCACTGTTCGGCCGCACCAATGCGGTGGAAACCCCAGCGCCGGCA 
CTGTGGCTGACCAGCACGCTGATCTCTGCGCTGCTGCTGGTGGCCTTCCTCAACGCCTCGGGCTACAACGCA 
CTGATCCAGTTGGCCACCTCGATGGCGCTGATCCCCTACCTGCTCTGCGCCGGCTTCTGCCTGAAGCTGGTG 
GCGCGCCGCCCGCACTCGGGCGCGATGCTGGCGCTGGCGCTGTTGGGGACGCTCTACGGGGTCTGGCTGATC 
TACGCCGCCGGGCTGAAATACCTGCTGCTGTCGATGATCCTCTACGCGCCGGGCCTCGGCTTCTTCCTGCAT 
GCCCGTCGCCAGCGCGACCTGCCGGCGTTCGGCAATCGCGCCGAAGGCAGCGTCGCGGCGCTGGTGCTGGTC 
CTCGCGCTGGCGGCGCTGTGGATGATCGGCAGCGGTCGGCTGAGCCTCTAG