ViewGene
Locus Name:
GeneID:
Location:

GeneID:965
TrivialName: PA14_67310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67310
PAO1 Ortholog Locus:PA5097
Sequence Length:1404
Protein Length:467
Start: 6012093
Stop: 6010690
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08482.1|AE004922_7 (AE004922) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 465/467 (99%), Positives = 466/467 (99%)
Sequence:
ATGACGCACGACACGGGGCTTCGGCGCGGGCTGAACGCCCGTCATATTCGTTTCATGGCACTGGGGTCGGCG
ATCGGCACCGGCCTGTTCTACGGTTCCGCATCGGCCATCCAGATGGCCGGGCCGGCGGTGCTGCTGGCCTAC
CTGGTCGCCGGCGCGGCGGTGTACATGGTGATGCGCGCGCTCGGCGAGATGGCGGTGCACGAGCCGGTGTCC
GGCTCGTTCGGCCATTACGCCAGCAGCTATCTCGGCCCCCTGGCCGGGTTCGTCACCGGCTGGACCTACGCT
TTCGAGATGATCATCGTCTGCCTCGCCGATGTCACCGCGTTCGGCATCTACATGGGGTTCTGGTTTCCCGAC
GTGCCGCGCTGGATCTGGGTACTGTCCATCGTGCTGTTCATCGGCGGGCTGAACCTCTGCCATGTCAAGGTC
TTCGGCGAGCTGGAGTTCTGGCTGTCGCTGGTCAAGGTCGGCGCCATCGTCGCGATGATCCTCGCCGGGCTC
GGCATCATGTTCTTCGGCTTCAGCCTGGACGGCGCGGCGACGTCCGCCACCGGCGTGCACAACCTGTGGCAG
CACGGTGGCTTCCTGCCCAACGGCTGGGCCGGGCTGGTCGCCTCGCTGTCGGTGGTGGTGTTCGCCTTCGGC
GGCATCGAGATCATCGGCATCACCGCCGGCGAGGCGCAGGACCCGCAGCGGGTGATCCCGCGGGCGATCAAT
GCGGTGCCGCTGCGCATCCTGCTGTTCTACGTGCTGACCCTGTTCGTGCTGATGGCGATCTTCCCCTGGCAG
CAGATCGGCAGCAACGGCAGTCCCTTCGTGCAGATCTTCGACGGCCTGGGGATCGAGTCGGCCGCGGCGATC
CTCAATGTCGTGGTGATCACCGCGGCGATCTCGGCGATCAACAGCGACATCTTCGGCGCCGGTCGCATGCTC
TACGGCATGGCCCGCCAGGGCCAGGCGCCGGTCGGCTTCTCGCGGGTGTCGCGGCACGGCGTGCCGTGGATG
ACCGTGCTGCTGATGGCGGTGGCCCTGCTGCTCGGCGTGGCGCTGAACTACCTGATCCCGCAGAGCGTATTC
CTGCTGATTGCTTCCATCGCCACCTTCGCCACCGTGTGGGTCTGGCTGATGATCCTCCTGGCCCAGGTCGGC
ATGCGCCGGCGCATGGGGCCGCGCCAGGTCGCCGCGCTGAAGTTCCCGGTGCCGCTGTGGCCATTCGCGCCG
GCGGCGGCGATCGTCTTCATGTTGTTCATCTTCGTGGTGCTCGGCTATTTCCCGGACACCCGCCCGGCCCTG
TGGGTCGGGGCTATCTGGATCGCCGTGCTGGTGATCGCCTACCGGCGCTGGGTCAGGCCGAAGGGCGATGCC
GCGCATGGCGTGCTTCAGGCCCAGGGAGGGCTGTGA
Translation:
MTHDTGLRRGLNARHIRFMALGSAIGTGLFYGSASAIQMAGPAVLLAYLVAGAAVYMVMRALGEMAVHEPVS
GSFGHYASSYLGPLAGFVTGWTYAFEMIIVCLADVTAFGIYMGFWFPDVPRWIWVLSIVLFIGGLNLCHVKV
FGELEFWLSLVKVGAIVAMILAGLGIMFFGFSLDGAATSATGVHNLWQHGGFLPNGWAGLVASLSVVVFAFG
GIEIIGITAGEAQDPQRVIPRAINAVPLRILLFYVLTLFVLMAIFPWQQIGSNGSPFVQIFDGLGIESAAAI
LNVVVITAAISAINSDIFGAGRMLYGMARQGQAPVGFSRVSRHGVPWMTVLLMAVALLLGVALNYLIPQSVF
LLIASIATFATVWVWLMILLAQVGMRRRMGPRQVAALKFPVPLWPFAPAAAIVFMLFIFVVLGYFPDTRPAL
WVGAIWIAVLVIAYRRWVRPKGDAAHGVLQAQGGL*
AnnotationID:974GeneID:965
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 17:05:44
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA5097, hutT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1113,COG0833,pfam00324
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58702.1| (AE016875) proline-specific permease proY [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 458

 Score =  717 bits (1850), Expect = 0.0
 Identities = 355/455 (78%), Positives = 393/455 (86%), Gaps = 5/455 (1%)

>gb|AAN70596.1|AE016702_5 (AE016792) amino acid transporter [Pseudomonas putida KT2440]
          Length = 467

 Score =  716 bits (1847), Expect = 0.0
 Identities = 351/462 (75%), Positives = 398/462 (86%), Gaps = 1/462 (0%)

>gb|AAM87580.1|AE014005_2 (AE014005) aromatic amino acid permease [Yersinia pestis KIM]
          Length = 472

 Score =  676 bits (1744), Expect = 0.0
 Identities = 325/445 (73%), Positives = 382/445 (85%), Gaps = 3/445 (0%)






 
Structural Features:
COG1113, AnsP, Gamma-aminobutyrate permease and related permeases 
[Amino acid transport and metabolism]
CD-Length = 462 residues,  98.7% aligned
Score =  514 bits (1325), Expect = 9e-147
Identities = 240/460 (52%), Positives = 333/460 (72%), Gaps = 4/460 (0%)

COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 541 residues,  85.6% aligned
Score =  345 bits (886), Expect = 8e-96
Identities = 169/468 (36%), Positives = 256/468 (54%), Gaps = 25/468 (5%)

pfam00324, AA_permease, Amino acid permease.
CD-Length = 473 residues,  95.1% aligned
Score =  236 bits (604), Expect = 4e-63
Identities = 164/454 (36%), Positives = 237/454 (52%), Gaps = 27/454 (5%)






   
Genomic Context:






   
Comment:
other possible gene name: proY


















    ReferenceID:1933




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19075




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34973




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:965_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:965
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1708
                           PA5097_tr
                           translation of PA5097
                           467
                           99.57
                           99.78
                           0
                           2396.0
     

     
     
60591
                           gb|AAG08482.1|AE004922_7
                           (AE004922) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           467
                           99.57
                           99.78
                           0
                           2396.0
     

     
     
60592
                           gb|AAO58702.1|
                           (AE016875) proline-specific permease proY [Pseudomonas syringae pv. tomato str. DC3000]
                           470
                           75.74
                           84.04
                           15
                           1853.0
     

     
     
60593
                           gb|AAN70596.1|AE016702_5
                           (AE016792) amino acid transporter [Pseudomonas putida KT2440]
                           470
                           75.10
                           85.10
                           6
                           1841.0
     

     
     
60594
                           gb|AAB86967.1|
                           (AF032970) inducible histidine transporter [Pseudomonas putida]
                           476
                           73.94
                           82.98
                           18
                           1837.0
     

     






      

          
GC ORFID: 43967How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5097Glimmer Score: 

          
Start: 5275778Stop: 5274375

          
Length: 1404


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5097 translation of PA5097Homolog Bit Score 927.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6904 (ORF: BLASTX 719.0), t_PA0789 (ORF: BLASTX 504.0), t_PA3000 (ORF: BLASTX 381.0), psyr_15may02_Scaffold8_revised_gene7800 (ORF: BLASTX 373.0), t_PA0866 (ORF: BLASTX 372.0), t_PA5097 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCACGACACGGGGCTTCGGCGCGGGCTGAACGCCCGTCATATTCGTTTCATGGCACTGGGGTCGGCG 
ATCGGCACCGGCCTGTTCTACGGTTCCGCATCGGCCATCCAGATGGCCGGGCCGGCGGTGCTGCTGGCCTAC 
CTGGTCGCCGGCGCGGCGGTGTACATGGTGATGCGCGCGCTCGGCGAGATGGCGGTGCACGAGCCGGTGTCC 
GGCTCGTTCGGCCATTACGCCAGCAGCTATCTCGGCCCCCTGGCCGGGTTCGTCACCGGCTGGACCTACGCT 
TTCGAGATGATCATCGTCTGCCTCGCCGATGTCACCGCGTTCGGCATCTACATGGGGTTCTGGTTTCCCGAC 
GTGCCGCGCTGGATCTGGGTACTGTCCATCGTGCTGTTCATCGGCGGGCTGAACCTCTGCCATGTCAAGGTC 
TTCGGCGAGCTGGAGTTCTGGCTGTCGCTGGTCAAGGTCGGCGCCATCGTCGCGATGATCCTCGCCGGGCTC 
GGCATCATGTTCTTCGGCTTCAGCCTGGACGGCGCGGCGACGTCCGCCACCGGCGTGCACAACCTGTGGCAG 
CACGGTGGCTTCCTGCCCAACGGCTGGGCCGGGCTGGTCGCCTCGCTGTCGGTGGTGGTGTTCGCCTTCGGC 
GGCATCGAGATCATCGGCATCACCGCCGGCGAGGCGCAGGACCCGCAGCGGGTGATCCCGCGGGCGATCAAT 
GCGGTGCCGCTGCGCATCCTGCTGTTCTACGTGCTGACCCTGTTCGTGCTGATGGCGATCTTCCCCTGGCAG 
CAGATCGGCAGCAACGGCAGTCCCTTCGTGCAGATCTTCGACGGCCTGGGGATCGAGTCGGCCGCGGCGATC 
CTCAATGTCGTGGTGATCACCGCGGCGATCTCGGCGATCAACAGCGACATCTTCGGCGCCGGTCGCATGCTC 
TACGGCATGGCCCGCCAGGGCCAGGCGCCGGTCGGCTTCTCGCGGGTGTCGCGGCACGGCGTGCCGTGGATG 
ACCGTGCTGCTGATGGCGGTGGCCCTGCTGCTCGGCGTGGCGCTGAACTACCTGATCCCGCAGAGCGTATTC 
CTGCTGATTGCTTCCATCGCCACCTTCGCCACCGTGTGGGTCTGGCTGATGATCCTCCTGGCCCAGGTCGGC 
ATGCGCCGGCGCATGGGGCCGCGCCAGGTCGCCGCGCTGAAGTTCCCGGTGCCGCTGTGGCCATTCGCGCCG 
GCGGCGGCGATCGTCTTCATGTTGTTCATCTTCGTGGTGCTCGGCTATTTCCCGGACACCCGCCCGGCCCTG 
TGGGTCGGGGCTATCTGGATCGCCGTGCTGGTGATCGCCTACCGGCGCTGGGTCAGGCCGAAGGGCGATGCC 
GCGCATGGCGTGCTTCAGGCCCAGGGAGGGCTGTGA