ViewGene
Locus Name:
GeneID:
Location:

GeneID:962
TrivialName: PA14_05990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05990
PAO1 Ortholog Locus:PA0458
Sequence Length:1434
Protein Length:477
Start: 530474
Stop: 529041
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03847.1|AE004483_5 (AE004483) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 477/477 (100%), Positives = 477/477 (100%)
Sequence:
ATGAGCGAGCCgttCCAGCTCACCCCCCGCATCGCCCGCCAACTGCCCTGGCTGGTCGCCGTCGCCTTCTTC
ATGCAAGCCCTCGACGGCACCATCCTCAACACCGCGCTGCCGAGCATGGCCAGTTCGCTGAACGAAAACCCG
CTGCGCATGCAGGCGGTGGTGATCGCCTACCTGCTCACGGTGGCCCTGCTGATACCGGCCTCGGGGTGGATC
GCCGACCGTTTCGGCACGCGCCGGGTGTTCCTCGGCGCGGTACTGCTGTTCAGCCTCGGCTCGTTGCTTTGC
GCGCTGTCGCCGAGCCTCGAACTGCTGGTCGGCGCGCGCATCGTACAGGGCGTCGGCGGCGCGCTGATGATG
CCGGTGGGACGGCTGGTGATCCTGCGCGTCTACCCGCGCCAGGACTTGGTGCGAGTGCTCAGCTTCGTCACC
ATTCCCGGCCTGCTCGGCCCGCTGGCGGGACCGACGCTGGGCGGCTGGCTGGTGGAGTACGCCTCCTGGCAC
TGGATATTCCTGATCAACCTGCCGGTCGGCCTGCTCGGCTGCCTGGTGGCGATGAAGCTGATGCCGGACCTG
CGCAGCCCGGTGCCGAGCCGTTTCGACAGCATCGGCTTCCTGCTCTTCGGCGGCTCCATGGTGCTGATCTCC
ATCGCCCTGGAAGGACTCGGCGAGCTGCACCTGTCGCACCTGCGCGTGGTCCTGCTGCTGATCGGCGGACTG
GTCCTGCTCACCGCCTACTGGCTGCGCGCGCTACGCATCGACAAGCCGCTGTTCCCGCCGAGCCTGTTCAAG
GCGCGGACCTTCGCCGTCGGCATCCTCGGCAACCTGTTCGCCCGCCTGGGCAGCGGCGCCCTGCCCTTCCTC
ACCCCGCTGTTGCTGCAGGTGGGACTGGGCTACCCGCCCTCCACCGCGGGCATGACCATGATCCCGCTGGCG
CTGTTCGCGATGGTCGCCAAGCCGATGGCCAAGCCACTGCTGGACTTCTTCGGCTATCGCAAGCTGCTGGTC
GGCAACACCCTGATCCTCGGCTGCCTGATCGCCGGCTTCGGCCTAGTCGACCAGGACACCCCCTACGTCTGG
CTGCTGCTGCACCTGAGCCTGCTCGGCGCGGTGAACTCCCTGCAATTCACGGCGATGAACACCCTCACCCTG
ATCGACCTGCAGGACAGCAACGCCAGCAGCGGCAACAGCCTGATGTCGGTGGTCGTGCAATTGTCGATCAGC
CTTGGCGTGGCTTGCGCGGCGGCGTTGCTGGGCGGTTTCCAGACCGACCTGGATACGGGGCAGGACACCGTA
CTCGGCGCCTTCCACGCCACCTATGTCAGCGTCGGCCTGATGTCGATGCTGGCCGCAGCGATCTTCTTCCAG
CTCGGCAGCGAGGACGGCCGCACCAGCCCGCGCCGGGTCGATCCGGAAAAGGACCCGGACCTCTAG
Translation:
MSEPFQLTPRIARQLPWLVAVAFFMQALDGTILNTALPSMASSLNENPLRMQAVVIAYLLTVALLIPASGWI
ADRFGTRRVFLGAVLLFSLGSLLCALSPSLELLVGARIVQGVGGALMMPVGRLVILRVYPRQDLVRVLSFVT
IPGLLGPLAGPTLGGWLVEYASWHWIFLINLPVGLLGCLVAMKLMPDLRSPVPSRFDSIGFLLFGGSMVLIS
IALEGLGELHLSHLRVVLLLIGGLVLLTAYWLRALRIDKPLFPPSLFKARTFAVGILGNLFARLGSGALPFL
TPLLLQVGLGYPPSTAGMTMIPLALFAMVAKPMAKPLLDFFGYRKLLVGNTLILGCLIAGFGLVDQDTPYVW
LLLHLSLLGAVNSLQFTAMNTLTLIDLQDSNASSGNSLMSVVVQLSISLGVACAAALLGGFQTDLDTGQDTV
LGAFHATYVSVGLMSMLAAAIFFQLGSEDGRTSPRRVDPEKDPDL*
AnnotationID:971GeneID:962
AnnotatorUID: diggins
Modification Date/Time: 2004-08-12 17:05:02
Gene Name:
Confidence Code:3
GeneProduct:putative drug resistance transporter, EmrB/QacA family
Cell Localization:()
Synonyms:emrA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70518.1|AE016694_1 (AE016792) drug resistance transporter, EmrB/QacA family
           [Pseudomonas putida KT2440]
          Length = 475

 Score =  644 bits (1661), Expect = 0.0
 Identities = 324/468 (69%), Positives = 383/468 (81%), Gaps = 1/468 (0%)

>gb|AAL22745.1| (AE008881) putative MFS family tranport protein [Salmonella
           typhimurium LT2]
          Length = 475

 Score =  455 bits (1170), Expect = e-127
 Identities = 244/448 (54%), Positives = 314/448 (70%), Gaps = 4/448 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:
other possible gene name: yieO
other possible gene product: putative MFS transporter


















    ReferenceID:1927




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19069




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33779




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:962_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:962
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1703
                           PA0458_tr
                           translation of PA0458
                           477
                           99.99
                           99.99
                           0
                           2399.0
     

     
     
60423
                           gb|AAG03847.1|AE004483_5
                           (AE004483) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           477
                           99.99
                           99.99
                           0
                           2399.0
     

     
     
60424
                           gb|AAN70518.1|AE016694_1
                           (AE016792) drug resistance transporter, EmrB/QacA family [Pseudomonas putida KT2440]
                           478
                           68.20
                           80.96
                           4
                           1662.0
     

     
     
60425
                           gb|AAO53951.1|
                           (AE016857) drug resistance transporter, EmrB/QacA family [Pseudomonas syringae pv. tomato str. DC3000]
                           478
                           65.06
                           78.45
                           17
                           1602.0
     

     
     
60426
                           emb|CAD18429.1|
                           (AL646083) PROBABLE TRANSPORTER TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           483
                           54.24
                           70.60
                           13
                           1291.0
     

     






      

          
GC ORFID: 43964How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0458Glimmer Score: 

          
Start: 6331816Stop: 6330383

          
Length: 1434


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0458 translation of PA0458Homolog Bit Score 928.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6832 (ORF: BLASTX 623.0), t_PA0458 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGCCgttCCAGCTCACCCCCCGCATCGCCCGCCAACTGCCCTGGCTGGTCGCCGTCGCCTTCTTC 
ATGCAAGCCCTCGACGGCACCATCCTCAACACCGCGCTGCCGAGCATGGCCAGTTCGCTGAACGAAAACCCG 
CTGCGCATGCAGGCGGTGGTGATCGCCTACCTGCTCACGGTGGCCCTGCTGATACCGGCCTCGGGGTGGATC 
GCCGACCGTTTCGGCACGCGCCGGGTGTTCCTCGGCGCGGTACTGCTGTTCAGCCTCGGCTCGTTGCTTTGC 
GCGCTGTCGCCGAGCCTCGAACTGCTGGTCGGCGCGCGCATCGTACAGGGCGTCGGCGGCGCGCTGATGATG 
CCGGTGGGACGGCTGGTGATCCTGCGCGTCTACCCGCGCCAGGACTTGGTGCGAGTGCTCAGCTTCGTCACC 
ATTCCCGGCCTGCTCGGCCCGCTGGCGGGACCGACGCTGGGCGGCTGGCTGGTGGAGTACGCCTCCTGGCAC 
TGGATATTCCTGATCAACCTGCCGGTCGGCCTGCTCGGCTGCCTGGTGGCGATGAAGCTGATGCCGGACCTG 
CGCAGCCCGGTGCCGAGCCGTTTCGACAGCATCGGCTTCCTGCTCTTCGGCGGCTCCATGGTGCTGATCTCC 
ATCGCCCTGGAAGGACTCGGCGAGCTGCACCTGTCGCACCTGCGCGTGGTCCTGCTGCTGATCGGCGGACTG 
GTCCTGCTCACCGCCTACTGGCTGCGCGCGCTACGCATCGACAAGCCGCTGTTCCCGCCGAGCCTGTTCAAG 
GCGCGGACCTTCGCCGTCGGCATCCTCGGCAACCTGTTCGCCCGCCTGGGCAGCGGCGCCCTGCCCTTCCTC 
ACCCCGCTGTTGCTGCAGGTGGGACTGGGCTACCCGCCCTCCACCGCGGGCATGACCATGATCCCGCTGGCG 
CTGTTCGCGATGGTCGCCAAGCCGATGGCCAAGCCACTGCTGGACTTCTTCGGCTATCGCAAGCTGCTGGTC 
GGCAACACCCTGATCCTCGGCTGCCTGATCGCCGGCTTCGGCCTAGTCGACCAGGACACCCCCTACGTCTGG 
CTGCTGCTGCACCTGAGCCTGCTCGGCGCGGTGAACTCCCTGCAATTCACGGCGATGAACACCCTCACCCTG 
ATCGACCTGCAGGACAGCAACGCCAGCAGCGGCAACAGCCTGATGTCGGTGGTCGTGCAATTGTCGATCAGC 
CTTGGCGTGGCTTGCGCGGCGGCGTTGCTGGGCGGTTTCCAGACCGACCTGGATACGGGGCAGGACACCGTA 
CTCGGCGCCTTCCACGCCACCTATGTCAGCGTCGGCCTGATGTCGATGCTGGCCGCAGCGATCTTCTTCCAG 
CTCGGCAGCGAGGACGGCCGCACCAGCCCGCGCCGGGTCGATCCGGAAAAGGACCCGGACCTCTAG