ViewGene
Locus Name:
GeneID:
Location:

GeneID:961
TrivialName: PA14_55600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55600
PAO1 Ortholog Locus:PA0670
Sequence Length:1416
Protein Length:471
Start: 4947187
Stop: 4948602
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04059.1|AE004502_2 (AE004502) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 459/471 (97%), Positives = 465/471 (98%)
Sequence:
ATGCTCTGGGCTTGCATTCTCCTGCCGCAACTGGCCATGGACAGCGCGCTGCGTCAACGGAACAATCCCGAC
GCACCGCTGGCGCTGCTCGGCGGCCCAGCGCAGCGCCGGCAGTTGCAGGCGGTCAACCCAGCGGCACGCGCG
CTCGGCCTGAGGCCCGGTCAATCGCTGATCGCCGCCCAGGCCCTGAGCCGGGACTTCGCCACGGCGGAATAC
GACCTCGCCGCCGTGGAGCGCTGGCAGGCCTTCCTCGCCGCCTGGGCCTACGGTTTCAGCTCGCAGGTCAGC
CTGCACTATCCGCGCGCGCTGCTGCTGGAAGTGCAGTCCAGCCTTGCCCTGTTCGGCCCCTGGCCACGCTTC
GAGGCCCGCTTGCGCAAGGAACTCACGGCGCTGGGCTTCCGCCATCGCCTGTGCCTGGCGCCGAACCCGGTG
GCGGCgaaggtcatgcgcactacacaggacaacattTccATCGAGGACGAGACAGCGCTGCAACACCAGTTG
TCCGCCCTTCCGCTGGACCGCCTGGGACTCTCGCGGGAGCTGGCCGTCGCCCTCGGACGCATGGGACTGCGC
CATCTGCGCCAGGTCCTCGAGTTGCCGCGCGCCGCCCTGGCCCGTCGCTTCCCGGCCGAACTGCTGTTGCAC
ATCGACCGCCTCTGCGGCCGCAGCCCGCTGGCGCTGGAGCACTACCGGCCGCCGGACACCTTCGACCTGCGC
ATCGAACTCAATTTCGACGTGGAATCGCACCAGGCCCTGCTCTTCCCCCTGCGACGGCTGAGCGCCGATCTC
GCCGCCTTTCTCGCCGGACGCGACAGCGGCGTGCAGCGCTTCACCCTGCATCTGGAGCATCACGGGCGCGCC
GACAGCCAGGTCACGGTCGGCCTGCTCAGCGCCGAACGCGAGGCGACCATGCTCTTCGAACTGACCCGCGGC
CGTCTCGAACAGCTGCAACTGCCCGCCCCCGTGCATGCCGTGCGCCTGGAGGCCCGCGAGCTGCCTCCTTTC
ACGCCGCAGCACCGCGAACTGTTCGACGAGCGCCCACAGCAGTATCTCGGCTGGGAACAGTTGCGGGAACGC
CTGCGCGCGCGGCTGGGCGACGAGGCGGTACAGGGCCTGAGCGCCGTCGCCGAACACCGTCCGGAGCGAAGC
TGGCGGCCGCACAGCTGCGACAGGGCGCAATCGCCGGCAGCCTGCGGCCTCCGACCCGGCTGGCTGCTGGCG
GAGCCACGCCCCCTCGGCGAGGCCTTGCCCACCGTGCTGGCCGGCCCGGAGCGGATCGAGTCGGGCTGGTGG
GATGGCGAAGACATCCGCCGCGACTATTACCTGGTGGAAACCCGCAGCGGACAACGTGCCTGGGTCTATCGC
GAGGTGGGCAGCGAAGGGCCGCTGTGGCTGCATGGCTGGTTCGCATGA
Translation:
MLWACILLPQLAMDSALRQRNNPDAPLALLGGPAQRRQLQAVNPAARALGLRPGQSLIAAQALSRDFATAEY
DLAAVERWQAFLAAWAYGFSSQVSLHYPRALLLEVQSSLALFGPWPRFEARLRKELTALGFRHRLCLAPNPV
AAKVMRTTQDNISIEDETALQHQLSALPLDRLGLSRELAVALGRMGLRHLRQVLELPRAALARRFPAELLLH
IDRLCGRSPLALEHYRPPDTFDLRIELNFDVESHQALLFPLRRLSADLAAFLAGRDSGVQRFTLHLEHHGRA
DSQVTVGLLSAEREATMLFELTRGRLEQLQLPAPVHAVRLEARELPPFTPQHRELFDERPQQYLGWEQLRER
LRARLGDEAVQGLSAVAEHRPERSWRPHSCDRAQSPAACGLRPGWLLAEPRPLGEALPTVLAGPERIESGWW
DGEDIRRDYYLVETRSGQRAWVYREVGSEGPLWLHGWFA*
AnnotationID:970GeneID:961
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 13:01:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0670
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair 
[DNA replication, recombination, and repair], 
CD-Length = 354 residues,  92.9% aligned 
Score = 57.7 bits (139), Expect = 6e-09







   
Genomic Context:






   
Comment:


















    ReferenceID:1925




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19067




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:961
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1702
                           PA0670_tr
                           translation of PA0670
                           471
                           97.45
                           98.72
                           0
                           2398.0
     

     
     
60418
                           gb|AAG04059.1|AE004502_2
                           (AE004502) hypothetical protein PA0670 [Pseudomonas aeruginosa PAO1]
                           471
                           97.45
                           98.72
                           0
                           2398.0
     

     
     
60419
                           gb|AAO56294.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           487
                           64.68
                           75.56
                           16
                           1626.0
     

     
     
60420
                           gb|AAN68726.1|AE016504_9
                           (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
                           474
                           62.02
                           73.41
                           5
                           1484.0
     

     
     
60421
                           gb|AAM40399.1|
                           (AE012208) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           473
                           52.64
                           65.96
                           3
                           1202.0
     

     






      

          
GC ORFID: 43963How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0670Glimmer Score: 

          
Start: 6720Stop: 5305

          
Length: 1416


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0670 translation of PA0670Homolog Bit Score 928.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7446 (ORF: BLASTX 622.0), t_PA0670 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCTGGGCTTGCATTCTCCTGCCGCAACTGGCCATGGACAGCGCGCTGCGTCAACGGAACAATCCCGAC 
GCACCGCTGGCGCTGCTCGGCGGCCCAGCGCAGCGCCGGCAGTTGCAGGCGGTCAACCCAGCGGCACGCGCG 
CTCGGCCTGAGGCCCGGTCAATCGCTGATCGCCGCCCAGGCCCTGAGCCGGGACTTCGCCACGGCGGAATAC 
GACCTCGCCGCCGTGGAGCGCTGGCAGGCCTTCCTCGCCGCCTGGGCCTACGGTTTCAGCTCGCAGGTCAGC 
CTGCACTATCCGCGCGCGCTGCTGCTGGAAGTGCAGTCCAGCCTTGCCCTGTTCGGCCCCTGGCCACGCTTC 
GAGGCCCGCTTGCGCAAGGAACTCACGGCGCTGGGCTTCCGCCATCGCCTGTGCCTGGCGCCGAACCCGGTG 
GCGGCgaaggtcatgcgcactacacaggacaacattTccATCGAGGACGAGACAGCGCTGCAACACCAGTTG 
TCCGCCCTTCCGCTGGACCGCCTGGGACTCTCGCGGGAGCTGGCCGTCGCCCTCGGACGCATGGGACTGCGC 
CATCTGCGCCAGGTCCTCGAGTTGCCGCGCGCCGCCCTGGCCCGTCGCTTCCCGGCCGAACTGCTGTTGCAC 
ATCGACCGCCTCTGCGGCCGCAGCCCGCTGGCGCTGGAGCACTACCGGCCGCCGGACACCTTCGACCTGCGC 
ATCGAACTCAATTTCGACGTGGAATCGCACCAGGCCCTGCTCTTCCCCCTGCGACGGCTGAGCGCCGATCTC 
GCCGCCTTTCTCGCCGGACGCGACAGCGGCGTGCAGCGCTTCACCCTGCATCTGGAGCATCACGGGCGCGCC 
GACAGCCAGGTCACGGTCGGCCTGCTCAGCGCCGAACGCGAGGCGACCATGCTCTTCGAACTGACCCGCGGC 
CGTCTCGAACAGCTGCAACTGCCCGCCCCCGTGCATGCCGTGCGCCTGGAGGCCCGCGAGCTGCCTCCTTTC 
ACGCCGCAGCACCGCGAACTGTTCGACGAGCGCCCACAGCAGTATCTCGGCTGGGAACAGTTGCGGGAACGC 
CTGCGCGCGCGGCTGGGCGACGAGGCGGTACAGGGCCTGAGCGCCGTCGCCGAACACCGTCCGGAGCGAAGC 
TGGCGGCCGCACAGCTGCGACAGGGCGCAATCGCCGGCAGCCTGCGGCCTCCGACCCGGCTGGCTGCTGGCG 
GAGCCACGCCCCCTCGGCGAGGCCTTGCCCACCGTGCTGGCCGGCCCGGAGCGGATCGAGTCGGGCTGGTGG 
GATGGCGAAGACATCCGCCGCGACTATTACCTGGTGGAAACCCGCAGCGGACAACGTGCCTGGGTCTATCGC 
GAGGTGGGCAGCGAAGGGCCGCTGTGGCTGCATGGCTGGTTCGCATGA