ViewGene

Locus Name:
GeneID:
Location:

GeneID: 960

TrivialName: PA14_13190

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_13190

PAO1 Ortholog Locus: PA3919

Sequence Length: 1392

Protein Length: 463

Start: 1135535

Stop: 1136926

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07306.1|AE004809_6 (AE004809) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 463/463 (100%), Positives = 463/463 (100%)

Sequence:

ATGGATGACCACGGACGTTCCCGCCCCACCCAGCCCACCCTGTACGTCCTCGATACCAATGTCCTGATCCAC
GATCCGAATGCCCTGTTGAACTTCCAGGAACACCGCGTCGCGATCCCGATGACGGTGCTCGAAGAGCTGGAC
AAGCTGAAGACCGGAAAGCACACCATCGCCGCCGAGTGCCGCCAGGCCATCCGCCTGATCGACCAGGTACTC
GGCGAGGCCACGCCCGAGCAGGTCGAGGGAGGGGTACCGATCCAGCGTGGCAAGAACGGCCCCAGCGGCAGC
CTGTCGATCCTCATGAGCAAGCGTGCCGAGCCCATCACCTGGCTGCCGGAGCACCTCAACGACAACAAGATC
ATCAACCAGTTGGTCGAGCTGAAGAGCCGCCACAGCGGCGTACGCGTGGTGCTGGTGACCAAGGACATCAAC
ATGCGCCTGAAGGCGCGCGCCTGCGGGGTGGACGCGGAGGACTACCACACCGACCAGCTGATCGACGACGTG
GCCCTGCTGTCGCGCGGCTACCATTCCCTCGCCGGCTCTTTCTGGGACCGCGTGAGCAAGGTCGAGACCCGC
CAGGACCACGGCCGTACCTGGCATCGCGTGCAGCTCACCGACAACCTGCCGGCGGTGCACATCAACGAGTTC
ATCGTCGACGAACAGGGCTTCGTCGGCTGGATCAAGGGCATCCAGCAGGACGAGCTGACCATCCTCGACCTG
CACCAGGAGCCGCTCCTGCACCAGGAAGCCTGGGGCCTGCGGCCACGCGACGTGTACCAGTCGCTGGCGCTG
TACGCGCTGCTCGACCCGGACATCCACCTGGTCAACCTGTCCGGTGCCGCCGGTTCCGGCAAGACCATCCTG
GCGCTCGCCGCGGCCATCGAGCAGACCATGGTCAGCAAGCGCTACCGGCGCATCATCGCCACCCGCAGCGTG
CAGGGCCTGGACGAGGACATCGGTTTCCTGCCCGGCACCGAGGCGGAAAAGATGGAGCCCTGGCTCGGCGCC
ATCACCGACAACCTCGAAGCGCTGCACATGGACGACGAATGCACCCATGGCAGCGTCGACTACATCCTCAGC
AAGGTGCCGTTGCAGTTCAAGTCGCTGAACTACATCCGCGGGCGCAGCTTCCAGCAGAGCCTGATCCTCATC
GACGAATGCCAGAACCTCACGCCGCACCAGATGAAGACCATCATCACCCGCGCCGGCAGCGGTTCGAAGGTG
ATCTGCCTGGGCAACCTGGCGCAGATCGACACGCCCTACCTGTCCGCCACCAGCTCCGGCCTGACCTACCTC
ACCGAACGCTTCAAGGACTTCCCCCACGGCGTGCACGTGACCCTGCAAGGGGTGCCGCGCTCGGTGCTGGCG
GAGTACGCCGAGGCGCATATGTAA

Translation:

MDDHGRSRPTQPTLYVLDTNVLIHDPNALLNFQEHRVAIPMTVLEELDKLKTGKHTIAAECRQAIRLIDQVL
GEATPEQVEGGVPIQRGKNGPSGSLSILMSKRAEPITWLPEHLNDNKIINQLVELKSRHSGVRVVLVTKDIN
MRLKARACGVDAEDYHTDQLIDDVALLSRGYHSLAGSFWDRVSKVETRQDHGRTWHRVQLTDNLPAVHINEF
IVDEQGFVGWIKGIQQDELTILDLHQEPLLHQEAWGLRPRDVYQSLALYALLDPDIHLVNLSGAAGSGKTIL
ALAAAIEQTMVSKRYRRIIATRSVQGLDEDIGFLPGTEAEKMEPWLGAITDNLEALHMDDECTHGSVDYILS
KVPLQFKSLNYIRGRSFQQSLILIDECQNLTPHQMKTIITRAGSGSKVICLGNLAQIDTPYLSATSSGLTYL
TERFKDFPHGVHVTLQGVPRSVLAEYAEAHM*

AnnotationID:969 GeneID:960

AnnotatorUID: urbach

Modification Date/Time: 2004-03-08 14:02:35

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA3919

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:1923

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19065

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:960

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1701 PA3919_tr translation of PA3919 463 99.99 99.99 0 2402.0

60400 gb|AAG07306.1|AE004809_6 (AE004809) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 463 99.99 99.99 0 2402.0

60401 gb|AAO54771.1| (AE016860) PhoH-like protein [Pseudomonas syringae pv. tomato str. DC3000] 464 84.69 92.67 1 2066.0

60402 gb|AAN66915.1|AE016320_3 (AE016778) PhoH family protein [Pseudomonas putida KT2440] 464 84.26 93.10 1 2061.0

60407 gb|AAN53656.1|AE015504_6 (AE015504) PhoH family protein [Shewanella oneidensis MR-1] 485 50.51 66.39 43 1167.0

GC ORFID: `43962`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3919`	Glimmer Score:
Start: `3818403`	Stop: `3817012`
Length: `1392`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA3919 translation of PA3919`	Homolog Bit Score `929.0`
Other Homologs: `psyr_15may02_Scaffold3_revised_gene4382 (ORF: BLASTX 803.0), t_PA3919 (ORF: GLIMMER)`
GC ORF Sequence
ATGGATGACCACGGACGTTCCCGCCCCACCCAGCCCACCCTGTACGTCCTCGATACCAATGTCCTGATCCAC GATCCGAATGCCCTGTTGAACTTCCAGGAACACCGCGTCGCGATCCCGATGACGGTGCTCGAAGAGCTGGAC AAGCTGAAGACCGGAAAGCACACCATCGCCGCCGAGTGCCGCCAGGCCATCCGCCTGATCGACCAGGTACTC GGCGAGGCCACGCCCGAGCAGGTCGAGGGAGGGGTACCGATCCAGCGTGGCAAGAACGGCCCCAGCGGCAGC CTGTCGATCCTCATGAGCAAGCGTGCCGAGCCCATCACCTGGCTGCCGGAGCACCTCAACGACAACAAGATC ATCAACCAGTTGGTCGAGCTGAAGAGCCGCCACAGCGGCGTACGCGTGGTGCTGGTGACCAAGGACATCAAC ATGCGCCTGAAGGCGCGCGCCTGCGGGGTGGACGCGGAGGACTACCACACCGACCAGCTGATCGACGACGTG GCCCTGCTGTCGCGCGGCTACCATTCCCTCGCCGGCTCTTTCTGGGACCGCGTGAGCAAGGTCGAGACCCGC CAGGACCACGGCCGTACCTGGCATCGCGTGCAGCTCACCGACAACCTGCCGGCGGTGCACATCAACGAGTTC ATCGTCGACGAACAGGGCTTCGTCGGCTGGATCAAGGGCATCCAGCAGGACGAGCTGACCATCCTCGACCTG CACCAGGAGCCGCTCCTGCACCAGGAAGCCTGGGGCCTGCGGCCACGCGACGTGTACCAGTCGCTGGCGCTG TACGCGCTGCTCGACCCGGACATCCACCTGGTCAACCTGTCCGGTGCCGCCGGTTCCGGCAAGACCATCCTG GCGCTCGCCGCGGCCATCGAGCAGACCATGGTCAGCAAGCGCTACCGGCGCATCATCGCCACCCGCAGCGTG CAGGGCCTGGACGAGGACATCGGTTTCCTGCCCGGCACCGAGGCGGAAAAGATGGAGCCCTGGCTCGGCGCC ATCACCGACAACCTCGAAGCGCTGCACATGGACGACGAATGCACCCATGGCAGCGTCGACTACATCCTCAGC AAGGTGCCGTTGCAGTTCAAGTCGCTGAACTACATCCGCGGGCGCAGCTTCCAGCAGAGCCTGATCCTCATC GACGAATGCCAGAACCTCACGCCGCACCAGATGAAGACCATCATCACCCGCGCCGGCAGCGGTTCGAAGGTG ATCTGCCTGGGCAACCTGGCGCAGATCGACACGCCCTACCTGTCCGCCACCAGCTCCGGCCTGACCTACCTC ACCGAACGCTTCAAGGACTTCCCCCACGGCGTGCACGTGACCCTGCAAGGGGTGCCGCGCTCGGTGCTGGCG GAGTACGCCGAGGCGCATATGTAA