ViewGene
Locus Name:
GeneID:
Location:

GeneID:958
TrivialName: PA14_47900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47900
PAO1 Ortholog Locus:PA1262
Sequence Length:1443
Protein Length:480
Start: 4262897
Stop: 4264339
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04651.1|AE004556_1 (AE004556) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 477/480 (99%), Positives = 478/480 (99%)
Sequence:
ATGCCCAGCACCGTCTCGTCGTCGCGGCTCGGCCTCGCCGGGCTCTGCATCCTGCTGGCGGGGCAACTGTTG
CCGATGATCGATTTCTCCATCGTCAACGTCGCCCTCGACGCCCTCGCCCATTCCCTCGGCGCCAGCGAAACC
GAACTGGAACTGATCGTCGCCGTCTACGGCGTGGCCTTCGCCGTGTGCCTGGCGATGGGCGGCCGGCTTGGC
GACAACTACGGCCGTCGCCGCCTGTTCGATCTCGGCGTCGCCCTGTTCGCCGTCGCCTCGTTGCTTTGCGGG
CTGGCCGGTTCGGTCTGGCTGCTGCTGGTGGCGCGCGCCCTGCAGGGCGTCGGCGCGGCGCTGATCGTGCCG
CAGATCCTCGCCACCCTGCATGTCAGCCTCAGCGGCCACGCGCATTCCCGCGCGCTGGCCGCCTACGGCGCC
ATCGGCGGCCTGGCCTTCGTCGTCGGCCAGGTGCTCGGCGGCTTCCTGGTCTCCGCCGACATCGGCGGCCTC
GGCTGGCGCAGCGTGTTCCTGATCAACCTGCCGATCTGCCTCGGCATTCTCCTTTGCAGCCGCCGCTGGGTA
CCGGAGACCCGCGCCGAGCATGCCGCCCGCGTCGACGCGCCGGGCACCCTGCTGCTCGCCGCGCTGATCCTC
TGCCTGCTGCTGCCGCTGGCTCTCGGCCCATCGCTGCACTGGTCCTGGCCCTGCGCCCTGCTGCTGGCGGCG
GCGGTGCCGCTGCTGGCCTGGCTGTGGCGCACCGAGCTGCGCCAGGAACGCCGCCAGGCCTGGCCGTTGCTG
CCGCCGTCGCTGCTGCGCCTGCCGAGCATCCGCTTCGGCCTGTTGCTGGCGATCCTGTTCTTCGCCTGCTGG
AGCGGCTTCATGTTCGCCCTTGCCCTGGCCCTGCAGGCCGGCGCCGGTCTCTCGCCGGTGCAGGCCGGCAAT
GCCTTCATCGCCCTCGGCGCCTCCTACTTCGTCTCGGCGCTGCTCACCGCCCGGGTGGCGGCGCGGATCGGC
CCGGTACGCCTGCTGCTGCTCGGCTGCGTCATCCAGATGTGCGGCCTGCTCGGCCTGATGCTGACCCTGCAA
CGGGTCTGGCCGCAGCCGGGCATCCTCAACCTGGCGCCGGCGACCCTGGTGATCGGCTTCGGCCAGGCGTTC
ATCGTCAGCAGCTTCTTCCGCATCGGCCTCTCGGAGGTGCCGACCGCCCAGGCCGGCGCCGGCAGCGCCATG
CTCGCCACCGTCCAGCAGGCCTCCCTCGGCCTCGGCTCGGCGCTGCTCGGCGCGGTGTTCGCGCACAGGCTG
GAGCGCCATGGCGACTACCTGGAAGCGACGCAGACGACCCTGGCCGTCGAGTTCGTCCTGATGACGCTGCTG
CTCGGCGCCACCTGCCTCTTCTACCTGCGCCGCGTGCGCACGGTGCCATTGCGCTGCGACTCGCCGGGCAAC
TGA
Translation:
MPSTVSSSRLGLAGLCILLAGQLLPMIDFSIVNVALDALAHSLGASETELELIVAVYGVAFAVCLAMGGRLG
DNYGRRRLFDLGVALFAVASLLCGLAGSVWLLLVARALQGVGAALIVPQILATLHVSLSGHAHSRALAAYGA
IGGLAFVVGQVLGGFLVSADIGGLGWRSVFLINLPICLGILLCSRRWVPETRAEHAARVDAPGTLLLAALIL
CLLLPLALGPSLHWSWPCALLLAAAVPLLAWLWRTELRQERRQAWPLLPPSLLRLPSIRFGLLLAILFFACW
SGFMFALALALQAGAGLSPVQAGNAFIALGASYFVSALLTARVAARIGPVRLLLLGCVIQMCGLLGLMLTLQ
RVWPQPGILNLAPATLVIGFGQAFIVSSFFRIGLSEVPTAQAGAGSAMLATVQQASLGLGSALLGAVFAHRL
ERHGDYLEATQTTLAVEFVLMTLLLGATCLFYLRRVRTVPLRCDSPGN*
AnnotationID:967GeneID:958
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 13:01:01
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA1262
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC73358.1| (AP005043) putative transport protein [Streptomyces avermitilis
           MA-4680]
          Length = 475

 Score =  363 bits (933), Expect = e-99
 Identities = 210/457 (45%), Positives = 278/457 (60%), Gaps = 10/457 (2%)

>dbj|BAC70703.1| (AP005033) putative transport protein [Streptomyces avermitilis
           MA-4680]
          Length = 484

 Score =  312 bits (800), Expect = 3e-84
 Identities = 187/454 (41%), Positives = 261/454 (57%), Gaps = 11/454 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1919




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19061




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37514




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:958_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:958
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1699
                           PA1262_tr
                           translation of PA1262
                           480
                           99.37
                           99.58
                           0
                           2400.0
     

     
     
60375
                           gb|AAG04651.1|AE004556_1
                           (AE004556) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           480
                           99.37
                           99.58
                           0
                           2400.0
     

     
     
60377
                           emb|CAB69723.1|
                           (AL939112) putative transport protein [Streptomyces coelicolor A3(2)]
                           494
                           44.53
                           57.28
                           31
                           937.0
     

     
     
60376
                           dbj|BAC73358.1|
                           (AP005043) putative transport protein [Streptomyces avermitilis MA-4680]
                           493
                           43.61
                           58.01
                           31
                           946.0
     

     
     
60378
                           dbj|BAC70703.1|
                           (AP005033) putative transport protein [Streptomyces avermitilis MA-4680]
                           506
                           37.94
                           52.96
                           48
                           809.0
     

     






      

          
GC ORFID: 43960How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1262Glimmer Score: 

          
Start: 691012Stop: 689570

          
Length: 1443


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1262 translation of PA1262Homolog Bit Score 929.0

          
Other Homologs:  t_PA1262 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAGCACCGTCTCGTCGTCGCGGCTCGGCCTCGCCGGGCTCTGCATCCTGCTGGCGGGGCAACTGTTG 
CCGATGATCGATTTCTCCATCGTCAACGTCGCCCTCGACGCCCTCGCCCATTCCCTCGGCGCCAGCGAAACC 
GAACTGGAACTGATCGTCGCCGTCTACGGCGTGGCCTTCGCCGTGTGCCTGGCGATGGGCGGCCGGCTTGGC 
GACAACTACGGCCGTCGCCGCCTGTTCGATCTCGGCGTCGCCCTGTTCGCCGTCGCCTCGTTGCTTTGCGGG 
CTGGCCGGTTCGGTCTGGCTGCTGCTGGTGGCGCGCGCCCTGCAGGGCGTCGGCGCGGCGCTGATCGTGCCG 
CAGATCCTCGCCACCCTGCATGTCAGCCTCAGCGGCCACGCGCATTCCCGCGCGCTGGCCGCCTACGGCGCC 
ATCGGCGGCCTGGCCTTCGTCGTCGGCCAGGTGCTCGGCGGCTTCCTGGTCTCCGCCGACATCGGCGGCCTC 
GGCTGGCGCAGCGTGTTCCTGATCAACCTGCCGATCTGCCTCGGCATTCTCCTTTGCAGCCGCCGCTGGGTA 
CCGGAGACCCGCGCCGAGCATGCCGCCCGCGTCGACGCGCCGGGCACCCTGCTGCTCGCCGCGCTGATCCTC 
TGCCTGCTGCTGCCGCTGGCTCTCGGCCCATCGCTGCACTGGTCCTGGCCCTGCGCCCTGCTGCTGGCGGCG 
GCGGTGCCGCTGCTGGCCTGGCTGTGGCGCACCGAGCTGCGCCAGGAACGCCGCCAGGCCTGGCCGTTGCTG 
CCGCCGTCGCTGCTGCGCCTGCCGAGCATCCGCTTCGGCCTGTTGCTGGCGATCCTGTTCTTCGCCTGCTGG 
AGCGGCTTCATGTTCGCCCTTGCCCTGGCCCTGCAGGCCGGCGCCGGTCTCTCGCCGGTGCAGGCCGGCAAT 
GCCTTCATCGCCCTCGGCGCCTCCTACTTCGTCTCGGCGCTGCTCACCGCCCGGGTGGCGGCGCGGATCGGC 
CCGGTACGCCTGCTGCTGCTCGGCTGCGTCATCCAGATGTGCGGCCTGCTCGGCCTGATGCTGACCCTGCAA 
CGGGTCTGGCCGCAGCCGGGCATCCTCAACCTGGCGCCGGCGACCCTGGTGATCGGCTTCGGCCAGGCGTTC 
ATCGTCAGCAGCTTCTTCCGCATCGGCCTCTCGGAGGTGCCGACCGCCCAGGCCGGCGCCGGCAGCGCCATG 
CTCGCCACCGTCCAGCAGGCCTCCCTCGGCCTCGGCTCGGCGCTGCTCGGCGCGGTGTTCGCGCACAGGCTG 
GAGCGCCATGGCGACTACCTGGAAGCGACGCAGACGACCCTGGCCGTCGAGTTCGTCCTGATGACGCTGCTG 
CTCGGCGCCACCTGCCTCTTCTACCTGCGCCGCGTGCGCACGGTGCCATTGCGCTGCGACTCGCCGGGCAAC 
TGA