ViewGene
Locus Name:
GeneID:
Location:

GeneID:957
TrivialName: PA14_67340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67340
PAO1 Ortholog Locus:PA5099
Sequence Length:1443
Protein Length:480
Start: 6015224
Stop: 6013782
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08484.1|AE004922_9 (AE004922) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 477/480 (99%), Positives = 478/480 (99%)
Sequence:
ATGACCCAGGGCAGCGACAGCAAGCCACTGATCGAACGGCGCTCGATCGACTACATCCCGGCGAACGAGCGT
CACGGTCGCCTCTACAGCCAGTTCACCCTCTGGCTGGGGGCTAATCTACAAATCACCGCCATCGTCACCGGC
GCCCTCGCCGTGGTCCTCGGCGGCGACGTGTTCTGGTCGCTGGTCGGCCTGCTCATCGGCCAGCTCCTCGGC
GGTGCGGTGATGGCCCTGCACGCCGCGCAGGGGCCGCGCCTGGGGCTGCCGCAGATGATTTCCAGCCGGGTG
CAGTTCGGCGTCTACGGCGCCTGCATCCCGATCGCCCTGGTGTGCCTGATGTACCTGGGCTTCACCGCCACC
GGCACGGTGCTTTCCGGCCAGGCCATCGGCCAGCTCACCGGGCTCAGCGACAGCGCCGGGATCTTCATCTTC
GCCGCCTTCATCGTCCTGGTGACGGTGCTCGGCTATCGCGTCATCCACATCATCGGGCGGATCGCCAGCGTC
CTCGGCATCATCGCCTTCGTCTACCTGTTCAGCCGCCTGATGCTGCTCAGCGACATCGGCGATCTGCTCGCC
ATCCGCCACTTCAGCTGGGCCTCGTTCCTCCTCGCGGTGTCCCTGGCGGCGTCCTGGCAGATCGCCTTCGGC
CCCTACGTGGCCGACTATTCACGCTACCTGCCGGCGTCCACCTCGTCGTGGAAGACCTTCCTCGCCGTCGGC
CTCGGCTCGGTGCTCGGCGCCCAGGCCTCGATGGTCCTCGGGGTGTTCTCCGCAGCCCTGGCCAACGGCCAG
TTCGCCGGCCGCGAGGTGGCCTACATCGTCGGCCTGGGCAGCAGCGGGACCGTCGCCGCGCTGCTCTACTTC
AGCATCGCCTTCGGCAAGGTGACCATTTCCACGCTGAACTCCTACGGAAGCTTCATGTGCATCGCGACCATC
ATCAGCAGCGTACGCGGTCAACTGGAGATCACCCGCGTGCAACGCCTGTTCTTCGTCCTCGCGATCGTCGGC
GCCTCGACGCTCATCGCGCTGCTCGGCCAGCACTCGTTCCTCGCTGCGTTCAAGTCCTTCATCCTGTTCCTG
CTGACCTTCTTCACCCCGTGGAGCGCGGTGAACCTGGTCGACTACTACTTCATCACCCGCGAGCGCTATGAC
GTGCCCGCGCTGGCCGACCCCGACGGCCGCTACGGTCGCTGGAACCTGCCGGGAATCGCCGTCTATACCCTC
GGCGTGCTGGTGCAGATGCCGTTCCTGGCGACCACGCTGTACACCGGACCGATGGTCGAGCACCTCGGCGGC
GTGGATATCTCCTGGATCATCGGCTTGCTGGTGCCGGCGGTCCTCTACTACCTGGTGGCGCGGCGCAAGGCC
ACGCGCCAGGCCCCGGCGCGAATGATCCTGCCGGCCGATCCCGGCGCCTTCGAACGTCCCGCGCACGGGGCC
TGA
Translation:
MTQGSDSKPLIERRSIDYIPANERHGRLYSQFTLWLGANLQITAIVTGALAVVLGGDVFWSLVGLLIGQLLG
GAVMALHAAQGPRLGLPQMISSRVQFGVYGACIPIALVCLMYLGFTATGTVLSGQAIGQLTGLSDSAGIFIF
AAFIVLVTVLGYRVIHIIGRIASVLGIIAFVYLFSRLMLLSDIGDLLAIRHFSWASFLLAVSLAASWQIAFG
PYVADYSRYLPASTSSWKTFLAVGLGSVLGAQASMVLGVFSAALANGQFAGREVAYIVGLGSSGTVAALLYF
SIAFGKVTISTLNSYGSFMCIATIISSVRGQLEITRVQRLFFVLAIVGASTLIALLGQHSFLAAFKSFILFL
LTFFTPWSAVNLVDYYFITRERYDVPALADPDGRYGRWNLPGIAVYTLGVLVQMPFLATTLYTGPMVEHLGG
VDISWIIGLLVPAVLYYLVARRKATRQAPARMILPADPGAFERPAHGA*
AnnotationID:966GeneID:957
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative permease for cytosine/purines, uracil, thiamine, allantoin
Cell Localization:()
Synonyms:codB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1457,pfam02133
Secondary Functional Category(ies):Nucleotide transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK15633.1| (AF326719) purine cytosine permease-like protein [Pseudomonas
           syringae]
          Length = 447

 Score =  595 bits (1535), Expect = e-169
 Identities = 299/437 (68%), Positives = 358/437 (81%), Gaps = 1/437 (0%)








 
Structural Features:
COG1457, CodB, Purine-cytosine permease and related proteins 
[Nucleotide transport and metabolism]
CD-Length = 442 residues,  98.2% aligned
Score =  279 bits (716), Expect = 4e-76
Identities = 168/455 (36%), Positives = 230/455 (50%), Gaps = 25/455 (5%)

pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, thiamine, allantoin.
CD-Length = 436 residues, 100.0% aligned
Score =  145 bits (366), Expect = 1e-35
Identities = 95/444 (21%), Positives = 176/444 (39%), Gaps = 29/444 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34964




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:957_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:957
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1698
                           PA5099_tr
                           translation of PA5099
                           480
                           99.37
                           99.58
                           0
                           2404.0
     

     
     
60372
                           gb|AAG08484.1|AE004922_9
                           (AE004922) probable transporter [Pseudomonas aeruginosa PAO1]
                           480
                           99.37
                           99.58
                           0
                           2404.0
     

     
     
60373
                           gb|AAK15633.1|
                           (AF326719) purine cytosine permease-like protein [Pseudomonas syringae]
                           486
                           62.55
                           75.30
                           45
                           1538.0
     

     
     
60374
                           gb|AAQ60242.1|
                           (AE016919) purine cytosine permease-like protein [Chromobacterium violaceum ATCC 12472]
                           486
                           53.08
                           65.63
                           44
                           1225.0
     

     






      

          
GC ORFID: 43959How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5099Glimmer Score: 

          
Start: 5278909Stop: 5277467

          
Length: 1443


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5099 translation of PA5099Homolog Bit Score 930.0

          
Other Homologs:  t_PA5099 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAGGGCAGCGACAGCAAGCCACTGATCGAACGGCGCTCGATCGACTACATCCCGGCGAACGAGCGT 
CACGGTCGCCTCTACAGCCAGTTCACCCTCTGGCTGGGGGCTAATCTACAAATCACCGCCATCGTCACCGGC 
GCCCTCGCCGTGGTCCTCGGCGGCGACGTGTTCTGGTCGCTGGTCGGCCTGCTCATCGGCCAGCTCCTCGGC 
GGTGCGGTGATGGCCCTGCACGCCGCGCAGGGGCCGCGCCTGGGGCTGCCGCAGATGATTTCCAGCCGGGTG 
CAGTTCGGCGTCTACGGCGCCTGCATCCCGATCGCCCTGGTGTGCCTGATGTACCTGGGCTTCACCGCCACC 
GGCACGGTGCTTTCCGGCCAGGCCATCGGCCAGCTCACCGGGCTCAGCGACAGCGCCGGGATCTTCATCTTC 
GCCGCCTTCATCGTCCTGGTGACGGTGCTCGGCTATCGCGTCATCCACATCATCGGGCGGATCGCCAGCGTC 
CTCGGCATCATCGCCTTCGTCTACCTGTTCAGCCGCCTGATGCTGCTCAGCGACATCGGCGATCTGCTCGCC 
ATCCGCCACTTCAGCTGGGCCTCGTTCCTCCTCGCGGTGTCCCTGGCGGCGTCCTGGCAGATCGCCTTCGGC 
CCCTACGTGGCCGACTATTCACGCTACCTGCCGGCGTCCACCTCGTCGTGGAAGACCTTCCTCGCCGTCGGC 
CTCGGCTCGGTGCTCGGCGCCCAGGCCTCGATGGTCCTCGGGGTGTTCTCCGCAGCCCTGGCCAACGGCCAG 
TTCGCCGGCCGCGAGGTGGCCTACATCGTCGGCCTGGGCAGCAGCGGGACCGTCGCCGCGCTGCTCTACTTC 
AGCATCGCCTTCGGCAAGGTGACCATTTCCACGCTGAACTCCTACGGAAGCTTCATGTGCATCGCGACCATC 
ATCAGCAGCGTACGCGGTCAACTGGAGATCACCCGCGTGCAACGCCTGTTCTTCGTCCTCGCGATCGTCGGC 
GCCTCGACGCTCATCGCGCTGCTCGGCCAGCACTCGTTCCTCGCTGCGTTCAAGTCCTTCATCCTGTTCCTG 
CTGACCTTCTTCACCCCGTGGAGCGCGGTGAACCTGGTCGACTACTACTTCATCACCCGCGAGCGCTATGAC 
GTGCCCGCGCTGGCCGACCCCGACGGCCGCTACGGTCGCTGGAACCTGCCGGGAATCGCCGTCTATACCCTC 
GGCGTGCTGGTGCAGATGCCGTTCCTGGCGACCACGCTGTACACCGGACCGATGGTCGAGCACCTCGGCGGC 
GTGGATATCTCCTGGATCATCGGCTTGCTGGTGCCGGCGGTCCTCTACTACCTGGTGGCGCGGCGCAAGGCC 
ACGCGCCAGGCCCCGGCGCGAATGATCCTGCCGGCCGATCCCGGCGCCTTCGAACGTCCCGCGCACGGGGCC 
TGA