ViewGene
Locus Name:
GeneID:
Location:

GeneID:956
TrivialName: PA14_10530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10530
PAO1 Ortholog Locus:PA4132
Sequence Length:1416
Protein Length:471
Start: 906723
Stop: 905308
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07519.1|AE004829_9 (AE004829) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 470/471 (99%), Positives = 470/471 (99%)
Sequence:
ATGAAGCGCTACGAGAAATTCGCCGACGAGATTGCCGAGCTGATCCGCACCGGCGTCCTCGCCCCCGGGCAG
AAGGTGCCCTCGGTACGGCACGCCAGTCGTACCTACGGGGTCAGCGCTTCCACCGTGTTCCAGGCCTACTAC
CTGCTGGAAAGCCGTGGGCTGATCATGGCCCGCGCACGCTCCGGCTACTTCGTCTGCCAGCACGTGCAGCGG
CCGCTGCCGGAACCGGAGATCAGCCCGCGCCAGGCCGACGCCACCGAGGTCGACGTCAGCGAGCTGGTGTTC
TCCGTACTCAGTTCGATCAAGGACCCGGACACCGTGCCCTTCGGCTCGGCGTTTCCCAGTCCGCAACTGTTT
CCCCTGCCGCGCCTGGCGCGCTCGATGGCCCACGCGGTGCGCGACATGGACCCGCAGTCGGTGGTCGCCGAC
ATGACGCCGGGCAACCATGGCCTGCGCCGGCAGATCGCCCTGCGCTACATGGTCGGCGGCCTGCTGCTGCCG
GTGGAAGAACTGGTCATCAGCAACGGCGCGCTGGAGGCACTCAACCTCTGCCTGCAGGTGGTCACCCGTCCC
GGCGACCTGGTGGCCATCGAGGCGCCGGCGTTCTACGCCACCCTGCAGGTGCTGGAACGGTTGAAGCTGAAG
GCGGTGGAAATCCCCGTGCATCCGCGTGAAGGCATCGACCTGGAAGTGCTCGCCGACAGCCTGGAGCGCCTG
CCGATCAAGGCCTGCTGGTTCATGAGCAACTTCCAGAACCCGATGGGCGCGAGCATGGACGACGAGAAGAAA
CGCGCCCTCGCCGAGCTGCTGGCGCGCCACCAGGTGCCGATGATCGAGGACGACGTGTACGCCGAACTGTAC
TTCGGCCAGCAGGCGCCGAAACCGGTCAAGGCCTACGACCAGGAAGGCCTGGTGATGCACTGCAGTTCCTTC
TCCAAGAGCCTGGCGCCGGGCTACCGGGTCGGCTGGGTGGCCGGCGGACGCTACGCCGAGCAGATCGAGCGA
CTGAAGCTGATGACCAGCCTGTCGGCGTCGATCCCGGCCCAGGCGGCCATCGCCGACTATCTCCAGCACGGC
GGCTACGACCGCCACCTGCGCAAGCTGCGCTACGCCCTGGAGACCCAGCAGAACGCCATGCTCGCGGCGGTG
GCGCGTTACTTCCCCGAGCAGACCCGGGTCAGCCGTCCCAGCGGCGGCTACTTCCTCTGGCTGGAGTTGCCC
GAGGCGGTCGACTCGCTGCGCCTGTTCCAACTGGCCCTGGCCCAGGGCATCAGCCTCGCCCCGGGGCCGATC
TTCTCCGCCACCCGCCGCTTCGCCCATTGCGCCCGGCTCAACTACGGGCACCCGTGGAGCGCGCGGCAGGAG
AAGGCGATGGAGACACTCGGGCGGATCGCCCAGTCGCTGGCGGGATGA
Translation:
MKRYEKFADEIAELIRTGVLAPGQKVPSVRHASRTYGVSASTVFQAYYLLESRGLIMARARSGYFVCQHVQR
PLPEPEISPRQADATEVDVSELVFSVLSSIKDPDTVPFGSAFPSPQLFPLPRLARSMAHAVRDMDPQSVVAD
MTPGNHGLRRQIALRYMVGGLLLPVEELVISNGALEALNLCLQVVTRPGDLVAIEAPAFYATLQVLERLKLK
AVEIPVHPREGIDLEVLADSLERLPIKACWFMSNFQNPMGASMDDEKKRALAELLARHQVPMIEDDVYAELY
FGQQAPKPVKAYDQEGLVMHCSSFSKSLAPGYRVGWVAGGRYAEQIERLKLMTSLSASIPAQAAIADYLQHG
GYDRHLRKLRYALETQQNAMLAAVARYFPEQTRVSRPSGGYFLWLELPEAVDSLRLFQLALAQGISLAPGPI
FSATRRFAHCARLNYGHPWSARQEKAMETLGRIAQSLAG*
AnnotationID:965GeneID:956
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 13:01:12
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:PA4132
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative aminotransferase
Functional Category Confidence Code:5
COGs:COG1167,COG0436
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69145.1|AE016548_4 (AE016787) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 469

 Score =  716 bits (1848), Expect = 0.0
 Identities = 354/468 (75%), Positives = 409/468 (87%)

>emb|CAE36327.1| (BX640426) putative aminotransferase [Bordetella parapertussis]
          Length = 473

 Score =  539 bits (1389), Expect = e-152
 Identities = 270/466 (57%), Positives = 341/466 (73%), Gaps = 1/466 (0%)

>gb|AAM85908.1|AE013837_6 (AE013837) multi modular; putative transcriptional regulator; also
           putative ATP-binding component of a transport system
           [Yersinia pestis KIM]
          Length = 482

 Score =  457 bits (1175), Expect = e-128
 Identities = 226/469 (48%), Positives = 317/469 (67%), Gaps = 1/469 (0%)








 
Structural Features:
COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain 
and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
[Transcription / Amino acid transport and metabolism]
CD-Length = 459 residues,  99.3% aligned
Score =  392 bits (1008), Expect = 6e-110
Identities = 170/475 (35%), Positives = 253/475 (53%), Gaps = 23/475 (4%)

COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 393 residues,  92.9% aligned
Score =  150 bits (379), Expect = 4e-37
Identities = 92/375 (24%), Positives = 156/375 (41%), Gaps = 20/375 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1915




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19057




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36857




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:956_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:956
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1695
                           PA4132_tr
                           translation of PA4132
                           471
                           99.78
                           99.78
                           0
                           2404.0
     

     
     
60337
                           gb|AAG07519.1|AE004829_9
                           (AE004829) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           471
                           99.78
                           99.78
                           0
                           2404.0
     

     
     
60338
                           gb|AAN69145.1|AE016548_4
                           (AE016787) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           471
                           75.15
                           86.83
                           2
                           1848.0
     

     
     
60339
                           emb|CAE36327.1|
                           (BX640426) putative aminotransferase [Bordetella parapertussis]
                           479
                           57.41
                           72.44
                           14
                           1389.0
     

     
     
60340
                           emb|CAE31739.1|
                           (BX640440) putative aminotransferase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           479
                           57.41
                           72.23
                           14
                           1385.0
     

     






      

          
GC ORFID: 43958How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4132Glimmer Score: 

          
Start: 4047214Stop: 4048629

          
Length: 1416


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4132 translation of PA4132Homolog Bit Score 930.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1890 (ORF: BLASTX 685.0), t_PA2897 (ORF: BLASTX 367.0), psyr_15may02_Scaffold1_revised_gene985 (ORF: BLASTX 363.0), t_PA2032 (ORF: BLASTX 341.0), t_PA4132 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCGCTACGAGAAATTCGCCGACGAGATTGCCGAGCTGATCCGCACCGGCGTCCTCGCCCCCGGGCAG 
AAGGTGCCCTCGGTACGGCACGCCAGTCGTACCTACGGGGTCAGCGCTTCCACCGTGTTCCAGGCCTACTAC 
CTGCTGGAAAGCCGTGGGCTGATCATGGCCCGCGCACGCTCCGGCTACTTCGTCTGCCAGCACGTGCAGCGG 
CCGCTGCCGGAACCGGAGATCAGCCCGCGCCAGGCCGACGCCACCGAGGTCGACGTCAGCGAGCTGGTGTTC 
TCCGTACTCAGTTCGATCAAGGACCCGGACACCGTGCCCTTCGGCTCGGCGTTTCCCAGTCCGCAACTGTTT 
CCCCTGCCGCGCCTGGCGCGCTCGATGGCCCACGCGGTGCGCGACATGGACCCGCAGTCGGTGGTCGCCGAC 
ATGACGCCGGGCAACCATGGCCTGCGCCGGCAGATCGCCCTGCGCTACATGGTCGGCGGCCTGCTGCTGCCG 
GTGGAAGAACTGGTCATCAGCAACGGCGCGCTGGAGGCACTCAACCTCTGCCTGCAGGTGGTCACCCGTCCC 
GGCGACCTGGTGGCCATCGAGGCGCCGGCGTTCTACGCCACCCTGCAGGTGCTGGAACGGTTGAAGCTGAAG 
GCGGTGGAAATCCCCGTGCATCCGCGTGAAGGCATCGACCTGGAAGTGCTCGCCGACAGCCTGGAGCGCCTG 
CCGATCAAGGCCTGCTGGTTCATGAGCAACTTCCAGAACCCGATGGGCGCGAGCATGGACGACGAGAAGAAA 
CGCGCCCTCGCCGAGCTGCTGGCGCGCCACCAGGTGCCGATGATCGAGGACGACGTGTACGCCGAACTGTAC 
TTCGGCCAGCAGGCGCCGAAACCGGTCAAGGCCTACGACCAGGAAGGCCTGGTGATGCACTGCAGTTCCTTC 
TCCAAGAGCCTGGCGCCGGGCTACCGGGTCGGCTGGGTGGCCGGCGGACGCTACGCCGAGCAGATCGAGCGA 
CTGAAGCTGATGACCAGCCTGTCGGCGTCGATCCCGGCCCAGGCGGCCATCGCCGACTATCTCCAGCACGGC 
GGCTACGACCGCCACCTGCGCAAGCTGCGCTACGCCCTGGAGACCCAGCAGAACGCCATGCTCGCGGCGGTG 
GCGCGTTACTTCCCCGAGCAGACCCGGGTCAGCCGTCCCAGCGGCGGCTACTTCCTCTGGCTGGAGTTGCCC 
GAGGCGGTCGACTCGCTGCGCCTGTTCCAACTGGCCCTGGCCCAGGGCATCAGCCTCGCCCCGGGGCCGATC 
TTCTCCGCCACCCGCCGCTTCGCCCATTGCGCCCGGCTCAACTACGGGCACCCGTGGAGCGCGCGGCAGGAG 
AAGGCGATGGAGACACTCGGGCGGATCGCCCAGTCGCTGGCGGGATGA