ViewGene
Locus Name:
GeneID:
Location:

GeneID:955
TrivialName: PA14_26050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26050
PAO1 Ortholog Locus:PA2938
Sequence Length:1458
Protein Length:485
Start: 2275579
Stop: 2277036
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06326.1|AE004720_2 (AE004720) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 485/485 (100%), Positives = 485/485 (100%)
Sequence:
ATGGCCTACGGCCTGCAACATGTGCTGACCATGTATGGCGGTATCGTCGCGGTCCCCCTGATCCTCGGCCAG
GCCGCTGGCCTCGCGCCCGGCGACATCGGCCTGCTGATCGCCGCTTCGCTGTTCGCCGGCGGCCTGGCGACC
CTGCTGCAAACCCTCGGCGTGCCGTTCTTCGGCTGTCAGTTGCCGCTGGTCCAGGGGGTGTCCTTCGCTGGC
GTGGCGACCATGGTGGCGATCATCGGCAGCGGTGGCAGCGGCGGCATTCCCGCAGTGCTCGGCGCGGTGATG
GCGGCCTCGCTGATCGGGTTGCTGATCACGCCGATCTTTTCGCGCATCACCAAATTCTTCCCGCCGCTGGTG
ACCGGCATCGTCATCACCACCATCGGCCTGACCCTGATGCCGGTCGCCGCGCGCTGGGCGATGGGCGGCAAC
AGCCACGCGCCGGACTTCGGCAGCATGGCCAACATCGGCCTGGCGGCGATCACCCTGGTCATCGTGCTGCTG
CTGAGCAAGCTCGGCAGCGCCTCGATCTCGCGCCTGTCGATCCTCCTGGCGATGGTCATCGGCACCGTCATC
GCGGTGTTCCTCGGCATGGCCGACTTCTCCAAGGTCACCGAAGGCCCGCTGGTGGCGTTTCCCACGCCGTTC
CACTTCGGCATGCCGACCTTCCAGGTCGCCGCGATCATCTCGATGTGCATCGTGATCATGGTGACCCTGGTG
GAAACCTCGGCGGACATCCTCGCGGTAGGCGAGATCATCGACACCAAGGTCGACTCGCGGCGCCTGGGCAAC
GGCCTGCGCGCGGACATGTTCTCCAGCATGCTGGCGCCGATCTTCGGCTCCTTCACCCAGAGCGCCTTCGCC
CAGAACGTCGGCCTGGTGGCGGTGACCGGGATCAAGAGCCGCTACGTGGTCGCCACCGGCGGGTTGTTCCTG
GTGATCCTCGGCCTGCTGCCGGTGATGGGCCGGGTGATCGCCGCGGTGCCCACCGCCGTGCTCGGCGGCGCC
GGCATCGTGTTGTTCGGCACGGTCGCCGCCAGCGGCATCCGCACCCTGTCGAAGGTGGACTACCGCAACAAC
ATGAACCTGATCATCGTCGCCACTTCGATCGGCTTCGGCATGATCCCGATCGCCGCGCCGACGTTCTACGAT
CACTTCCCCAGTTGGTTCGCCACCATCTTCCATTCCGGCATCAGTTCCTCGGCGATCATGGCGATCCTGCTC
AACCTGGCGTTCAACCACTTCACTGCCGGCAACTCCGACCAGCAGTCGGTGTTCGTCGCCGCCAGCGAGCGG
ACCCTGCGCTACCAGGACATCGCCGCCCTGCACGAAGGCGACTATTTCCTCGACGGCAAGCTGTACGACGCC
CAGGGCAACGAAGTGCCGCTGGCCGGCGACGACAGCCATGGCGCGCCGCCGCGACGGCGCAGCGAAACCGCT
GAAGCCGGCAGCGCCTGA
Translation:
MAYGLQHVLTMYGGIVAVPLILGQAAGLAPGDIGLLIAASLFAGGLATLLQTLGVPFFGCQLPLVQGVSFAG
VATMVAIIGSGGSGGIPAVLGAVMAASLIGLLITPIFSRITKFFPPLVTGIVITTIGLTLMPVAARWAMGGN
SHAPDFGSMANIGLAAITLVIVLLLSKLGSASISRLSILLAMVIGTVIAVFLGMADFSKVTEGPLVAFPTPF
HFGMPTFQVAAIISMCIVIMVTLVETSADILAVGEIIDTKVDSRRLGNGLRADMFSSMLAPIFGSFTQSAFA
QNVGLVAVTGIKSRYVVATGGLFLVILGLLPVMGRVIAAVPTAVLGGAGIVLFGTVAASGIRTLSKVDYRNN
MNLIIVATSIGFGMIPIAAPTFYDHFPSWFATIFHSGISSSAIMAILLNLAFNHFTAGNSDQQSVFVAASER
TLRYQDIAALHEGDYFLDGKLYDAQGNEVPLAGDDSHGAPPRRRSETAEAGSA*
AnnotationID:964GeneID:955
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 12:12:04
Gene Name:
Confidence Code:3
GeneProduct:putative xanthine/uracil permease
Cell Localization:()
Synonyms:PA2938
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2233,pfam00860
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70216.1|AE016661_2 (AE016791) xanthine/uracil permease family protein [Pseudomonas
           putida KT2440]
          Length = 505

 Score =  783 bits (2021), Expect = 0.0
 Identities = 401/481 (83%), Positives = 436/481 (90%)

>emb|CAC47601.1| (AL591792) PUTATIVE PERMEASE TRANSMEMBRANE PROTEIN [Sinorhizobium
           meliloti]
          Length = 490

 Score =  767 bits (1981), Expect = 0.0
 Identities = 395/469 (84%), Positives = 432/469 (92%), Gaps = 3/469 (0%)

>emb|CAB61316.1| (AL939126) putative permease [Streptomyces coelicolor A3(2)]
          Length = 462

 Score =  434 bits (1117), Expect = e-121
 Identities = 220/424 (51%), Positives = 291/424 (68%), Gaps = 2/424 (0%)






 
Structural Features:
COG2233, UraA, Xanthine/uracil permeases 
[Nucleotide transport and metabolism]
CD-Length = 451 residues,  95.8% aligned
Score =  365 bits (938), Expect = 7e-102
Identities = 196/434 (45%), Positives = 274/434 (63%), Gaps = 7/434 (1%)

pfam00860, Permease family.
CD-Length = 389 residues,  98.7% aligned
Score =  219 bits (560), Expect = 5e-58
Identities = 144/387 (37%), Positives = 226/387 (58%), Gaps = 10/387 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1913




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19055




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36113




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:955_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:955
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1693
                           PA2938_tr
                           translation of PA2938
                           485
                           99.99
                           99.99
                           0
                           2403.0
     

     
     
60316
                           gb|AAG06326.1|AE004720_2
                           (AE004720) probable transporter [Pseudomonas aeruginosa PAO1]
                           485
                           99.99
                           99.99
                           0
                           2403.0
     

     
     
60317
                           gb|AAN70216.1|AE016661_2
                           (AE016791) xanthine/uracil permease family protein [Pseudomonas putida KT2440]
                           508
                           78.93
                           85.82
                           26
                           2019.0
     

     
     
60318
                           emb|CAC47601.1|
                           (AL591792) PUTATIVE PERMEASE TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
                           509
                           77.60
                           84.87
                           43
                           1984.0
     

     
     
60319
                           emb|CAB61316.1|
                           (AL939126) putative permease [Streptomyces coelicolor A3(2)]
                           505
                           44.35
                           58.81
                           63
                           1111.0
     

     






      

          
GC ORFID: 43957How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2938Glimmer Score: 

          
Start: 2678346Stop: 2676889

          
Length: 1458


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2938 translation of PA2938Homolog Bit Score 930.0

          
Other Homologs:  t_PA2938 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTACGGCCTGCAACATGTGCTGACCATGTATGGCGGTATCGTCGCGGTCCCCCTGATCCTCGGCCAG 
GCCGCTGGCCTCGCGCCCGGCGACATCGGCCTGCTGATCGCCGCTTCGCTGTTCGCCGGCGGCCTGGCGACC 
CTGCTGCAAACCCTCGGCGTGCCGTTCTTCGGCTGTCAGTTGCCGCTGGTCCAGGGGGTGTCCTTCGCTGGC 
GTGGCGACCATGGTGGCGATCATCGGCAGCGGTGGCAGCGGCGGCATTCCCGCAGTGCTCGGCGCGGTGATG 
GCGGCCTCGCTGATCGGGTTGCTGATCACGCCGATCTTTTCGCGCATCACCAAATTCTTCCCGCCGCTGGTG 
ACCGGCATCGTCATCACCACCATCGGCCTGACCCTGATGCCGGTCGCCGCGCGCTGGGCGATGGGCGGCAAC 
AGCCACGCGCCGGACTTCGGCAGCATGGCCAACATCGGCCTGGCGGCGATCACCCTGGTCATCGTGCTGCTG 
CTGAGCAAGCTCGGCAGCGCCTCGATCTCGCGCCTGTCGATCCTCCTGGCGATGGTCATCGGCACCGTCATC 
GCGGTGTTCCTCGGCATGGCCGACTTCTCCAAGGTCACCGAAGGCCCGCTGGTGGCGTTTCCCACGCCGTTC 
CACTTCGGCATGCCGACCTTCCAGGTCGCCGCGATCATCTCGATGTGCATCGTGATCATGGTGACCCTGGTG 
GAAACCTCGGCGGACATCCTCGCGGTAGGCGAGATCATCGACACCAAGGTCGACTCGCGGCGCCTGGGCAAC 
GGCCTGCGCGCGGACATGTTCTCCAGCATGCTGGCGCCGATCTTCGGCTCCTTCACCCAGAGCGCCTTCGCC 
CAGAACGTCGGCCTGGTGGCGGTGACCGGGATCAAGAGCCGCTACGTGGTCGCCACCGGCGGGTTGTTCCTG 
GTGATCCTCGGCCTGCTGCCGGTGATGGGCCGGGTGATCGCCGCGGTGCCCACCGCCGTGCTCGGCGGCGCC 
GGCATCGTGTTGTTCGGCACGGTCGCCGCCAGCGGCATCCGCACCCTGTCGAAGGTGGACTACCGCAACAAC 
ATGAACCTGATCATCGTCGCCACTTCGATCGGCTTCGGCATGATCCCGATCGCCGCGCCGACGTTCTACGAT 
CACTTCCCCAGTTGGTTCGCCACCATCTTCCATTCCGGCATCAGTTCCTCGGCGATCATGGCGATCCTGCTC 
AACCTGGCGTTCAACCACTTCACTGCCGGCAACTCCGACCAGCAGTCGGTGTTCGTCGCCGCCAGCGAGCGG 
ACCCTGCGCTACCAGGACATCGCCGCCCTGCACGAAGGCGACTATTTCCTCGACGGCAAGCTGTACGACGCC 
CAGGGCAACGAAGTGCCGCTGGCCGGCGACGACAGCCATGGCGCGCCGCCGCGACGGCGCAGCGAAACCGCT 
GAAGCCGGCAGCGCCTGA