ViewGene
Locus Name:
GeneID:
Location:

GeneID:953
TrivialName: PA14_13140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13140
PAO1 Ortholog Locus:PA3922
Sequence Length:1368
Protein Length:455
Start: 1128200
Stop: 1129567
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07309.1|AE004810_1 (AE004810) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 455/455 (100%), Positives = 455/455 (100%)
Sequence:
ATGAAAACAACGAAGATTCTTCTGCATACCGGTGTACTGGCCCTGAGCCTGCTGGCCAcccAGGTGATGGCG
GCGGTATCCGCCGACGAGGCGGCCAAGCTCGGCACCAGCCTGACTCCGTTGGGGGCGGAGAAGGCCGGCAAC
GCCGACGGCAGCATCCCCGCCTGGGATGGCGGCCTGGCGACCAACGCCGGCAGCGTCGACAGCCGTGGCTTC
CTCGCCAACCCCTATGCCAGCGAGCAACCGCTGTTCACCATCACCGCGCAGAACGTCGACCAGTACAAGGAC
AAGCTGACTCCCGGCCAACTGGCCATGTTCAAGCGCTACCCGGATACCTACAAGATCCCGGTATACAAGACC
CACCGCAGCGCCACCGTCCCGGCGGCGGTGCAGGAGGCGGCCAAGCGCAACGCCACCACCACCAAGCTGGTG
GAAGGCGGCAACGGCCTGGAGAACTTCGATACCGCCAACCCGTTCCCGATCCCGCAGAACGGCCTGGAGGTG
ATCTGGAACCACATCACCCGCTATCGCGGCGGCAGCGTCCGGCGCCTGGTGACCCAGGCCACTCCGCAGGTC
AACGGCTCCTACCAGCTGGTCTACTTCCAGGATGCCTTCACCTTCCGTACCAACCTGAAGGACTACAACCCG
AACAAGCCGAGCAACGTGCTGTTCTACTTCAAGCAGCGGGTCACCGCGCCCTCGCGCCTGGCCGGTAACGTG
CTGCTGGTCCACGAGACCCTCAACCAGGTCAAGGAGCCGCGCCTGGCGTGGCTCTACAACGCCGGCCAGCGC
CGCGTGCGGCGGGCTCCGCAGGTGTCCTACGACGGTCCCGGCACCGCCGCCGACGGCCTGCGCACCTCGGAC
AACTTCGACATGTACAACGGTGCGCCGGACCGCTACGACTGGAAGCTGGAAGGCAAGAAGGAAATCTACATT
CCCTACAACAGCTACAAGCTCGACGATCCGAAGATCAAGTACAGCGAAATCGTCAAGGCCGGCCACATCAAC
CAGGACCTGACCCGCTACGAGCTGCACCGCGTCTGGCATGTGGTCGCGACCCTGAAGCCGGGCGAGCGGCAC
ATCTACGCCAAGCGTGACTTCTACATCGACGAGGACACCTGGCAGGCCGCCGAGATCGACCATTACGACGGT
CGCGGCACCCTGTGGCGCGTGGCCGAGGCGCATGCCGAGCAGTACTACGACAAGCAGGTGCCCTGGTACGCG
GTGGAAACCCTCTACGACCTGCTCTCCGGCCGCTACCTGGCGCTGGGCATGAAGAACGAGGAGAAACAGGCC
TACGACTTCAACTACAGCGCTTCGGAAAGCGACTACACCCCGGCGGCGCTGCGCCAGGAAGGGGTACGCTGA
Translation:
MKTTKILLHTGVLALSLLATQVMAAVSADEAAKLGTSLTPLGAEKAGNADGSIPAWDGGLATNAGSVDSRGF
LANPYASEQPLFTITAQNVDQYKDKLTPGQLAMFKRYPDTYKIPVYKTHRSATVPAAVQEAAKRNATTTKLV
EGGNGLENFDTANPFPIPQNGLEVIWNHITRYRGGSVRRLVTQATPQVNGSYQLVYFQDAFTFRTNLKDYNP
NKPSNVLFYFKQRVTAPSRLAGNVLLVHETLNQVKEPRLAWLYNAGQRRVRRAPQVSYDGPGTAADGLRTSD
NFDMYNGAPDRYDWKLEGKKEIYIPYNSYKLDDPKIKYSEIVKAGHINQDLTRYELHRVWHVVATLKPGERH
IYAKRDFYIDEDTWQAAEIDHYDGRGTLWRVAEAHAEQYYDKQVPWYAVETLYDLLSGRYLALGMKNEEKQA
YDFNYSASESDYTPAALRQEGVR*
AnnotationID:962GeneID:953
AnnotatorUID: urbach
Modification Date/Time: 2004-03-17 17:05:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam07044
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1909




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19051




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:953
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1688
                           PA3922_tr
                           translation of PA3922
                           455
                           99.99
                           99.99
                           0
                           2405.0
     

     
     
60304
                           gb|AAG07309.1|AE004810_1
                           (AE004810) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           455
                           99.99
                           99.99
                           0
                           2405.0
     

     
     
60305
                           gb|AAN66391.1|AE016266_13
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           455
                           77.80
                           87.47
                           1
                           1911.0
     

     
     
60306
                           gb|AAO54679.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           463
                           76.02
                           85.31
                           9
                           1891.0
     

     
     
60307
                           gb|AAG06809.1|AE004763_4
                           (AE004763) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           457
                           69.14
                           84.68
                           3
                           1750.0
     

     






      

          
GC ORFID: 43955How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3922Glimmer Score: 

          
Start: 3825738Stop: 3824371

          
Length: 1368


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3922 translation of PA3922Homolog Bit Score 931.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4328 (ORF: BLASTX 738.0), t_PA3421 (ORF: BLASTX 677.0), t_PA3081 (ORF: BLASTX 479.0), psyr_15may02_Scaffold1_revised_gene732 (ORF: BLASTX 419.0), t_PA0383 (ORF: BLASTX 377.0), t_PA3922 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACAACGAAGATTCTTCTGCATACCGGTGTACTGGCCCTGAGCCTGCTGGCCAcccAGGTGATGGCG 
GCGGTATCCGCCGACGAGGCGGCCAAGCTCGGCACCAGCCTGACTCCGTTGGGGGCGGAGAAGGCCGGCAAC 
GCCGACGGCAGCATCCCCGCCTGGGATGGCGGCCTGGCGACCAACGCCGGCAGCGTCGACAGCCGTGGCTTC 
CTCGCCAACCCCTATGCCAGCGAGCAACCGCTGTTCACCATCACCGCGCAGAACGTCGACCAGTACAAGGAC 
AAGCTGACTCCCGGCCAACTGGCCATGTTCAAGCGCTACCCGGATACCTACAAGATCCCGGTATACAAGACC 
CACCGCAGCGCCACCGTCCCGGCGGCGGTGCAGGAGGCGGCCAAGCGCAACGCCACCACCACCAAGCTGGTG 
GAAGGCGGCAACGGCCTGGAGAACTTCGATACCGCCAACCCGTTCCCGATCCCGCAGAACGGCCTGGAGGTG 
ATCTGGAACCACATCACCCGCTATCGCGGCGGCAGCGTCCGGCGCCTGGTGACCCAGGCCACTCCGCAGGTC 
AACGGCTCCTACCAGCTGGTCTACTTCCAGGATGCCTTCACCTTCCGTACCAACCTGAAGGACTACAACCCG 
AACAAGCCGAGCAACGTGCTGTTCTACTTCAAGCAGCGGGTCACCGCGCCCTCGCGCCTGGCCGGTAACGTG 
CTGCTGGTCCACGAGACCCTCAACCAGGTCAAGGAGCCGCGCCTGGCGTGGCTCTACAACGCCGGCCAGCGC 
CGCGTGCGGCGGGCTCCGCAGGTGTCCTACGACGGTCCCGGCACCGCCGCCGACGGCCTGCGCACCTCGGAC 
AACTTCGACATGTACAACGGTGCGCCGGACCGCTACGACTGGAAGCTGGAAGGCAAGAAGGAAATCTACATT 
CCCTACAACAGCTACAAGCTCGACGATCCGAAGATCAAGTACAGCGAAATCGTCAAGGCCGGCCACATCAAC 
CAGGACCTGACCCGCTACGAGCTGCACCGCGTCTGGCATGTGGTCGCGACCCTGAAGCCGGGCGAGCGGCAC 
ATCTACGCCAAGCGTGACTTCTACATCGACGAGGACACCTGGCAGGCCGCCGAGATCGACCATTACGACGGT 
CGCGGCACCCTGTGGCGCGTGGCCGAGGCGCATGCCGAGCAGTACTACGACAAGCAGGTGCCCTGGTACGCG 
GTGGAAACCCTCTACGACCTGCTCTCCGGCCGCTACCTGGCGCTGGGCATGAAGAACGAGGAGAAACAGGCC 
TACGACTTCAACTACAGCGCTTCGGAAAGCGACTACACCCCGGCGGCGCTGCGCCAGGAAGGGGTACGCTGA