ViewGene
Locus Name:
GeneID:
Location:

GeneID:952
TrivialName: PA14_18300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18300
PAO1 Ortholog Locus:PA3559
Sequence Length:1395
Protein Length:464
Start: 1570839
Stop: 1569445
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06947.1|AE004776_10 (AE004776) probable nucleotide sugar dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 462/464 (99%), Positives = 463/464 (99%)
Sequence:
ATGAAGATCAGCGTATTCGGCAGTGGCTATGTAGGACTGGTGCAGGCCGCCGTCCTCGCCGAAGTGGGCCAC
GATGTACTGTGCATGGACATCGACCGGAACAAGGTCGAACGCCTCGCGCAGGGCCTCGCCAGCATCTACGAA
CCCGGGCTCGACGCCTTGCTGCGCGAAGGCCTGGACAGCGGCCGCCTGCGTTTCAGCAGCGATGCGCGCCTC
GCCGTGGAACACGGCCGGGTGCAGTTCATCGCGGTCGGTACCCCGCCTGGCGAGGACGGCGCGGCCGATCTC
GGCGCGGTCTTCGCGGTGGCCGATGCCATCGCCGAGCATCGCCGCAAGCCCGTCATCGTGGTGGAGAAATCG
ACCGTCCCGGTAGGCACCGGCGACCGCCTGCGCGCGCACATCGAGCGGCGCCTGGAAGCCGACGGACGCGAG
CTGGAATTCGAGATCGTCTCCAACCCGGAATTCCTCAAGGAAGGCTCCGCCGTCGCCGACTGCCGGCGCCCG
GACCGCATCGTGGTCGGCTGCGACAACGAAGAGGTGCGCCAGGTGATGCGCGAACTCTACGAGCCGTTCAAC
CGCAACCACGACCGCATGCTGTTCATGGGCCTGCGCAGCGCCGAACTGACCAAGTACGCGGCGAACGGCATG
CTGGCGACCAAGATCAGCTTCATCAACCAGATCGCCGAACTGGCCGAACACCTCGGCGCCGACATCGAGGCG
GTGCGCCAGGGCATCGGCGCCGACCCGCGGATCGGCTACCACTTCATCTACCCCGGCTGCGGCTACGGCGGC
TCCTGCTTCCCCAAGGACATGCGCGCGCTGATCCACAGCGCCGAGCAGGCGCATTGCTCCAGCGACCTGTTG
CAGGCAGTGGAAGCGATCAACCGGCGGCAGAAGCACAAGCTGTTCGAACGCATCCGGGTGTTCTACGACGGC
GACCTGCGCGGCAAGACCTTCGCCCTTTGGGGCCTGGCCTTCAAGCCGAACACCGACGACATGCGCGACGCG
CCCAGCCGCGAACTGATGGAAGCGCTCTGGCGCCACGGCGCGCAGGTGCGCGCCTACGATCCCGAAGCCATG
CAGGAAACCCAGCGGCTCTATGGCCACGACGAACGCCTGAGCCTGATGGGCACCCCCGAGGCGACCCTGGGA
GGCGCCGATGCGCTGGTCATCTGCACCGAGTGGCAGCAATTCAAGGCACCGGATTTCGAGCTGCTCAAGGAG
CGCCTGAAGGCCCCGGTGATCTTCGACGGGCGCAACCTCTACGACCCCGAGCGCATGGCCCGCCACGGCTTC
CACTACTACCCGATGGGACGCGGGCAGTCCTGCTCGTTGCCGATCAACGAGGCCAGCCTCGCACAGGAAGAT
GGCGTGCGCCTGTTGCGCCAGGCCTGA
Translation:
MKISVFGSGYVGLVQAAVLAEVGHDVLCMDIDRNKVERLAQGLASIYEPGLDALLREGLDSGRLRFSSDARL
AVEHGRVQFIAVGTPPGEDGAADLGAVFAVADAIAEHRRKPVIVVEKSTVPVGTGDRLRAHIERRLEADGRE
LEFEIVSNPEFLKEGSAVADCRRPDRIVVGCDNEEVRQVMRELYEPFNRNHDRMLFMGLRSAELTKYAANGM
LATKISFINQIAELAEHLGADIEAVRQGIGADPRIGYHFIYPGCGYGGSCFPKDMRALIHSAEQAHCSSDLL
QAVEAINRRQKHKLFERIRVFYDGDLRGKTFALWGLAFKPNTDDMRDAPSRELMEALWRHGAQVRAYDPEAM
QETQRLYGHDERLSLMGTPEATLGGADALVICTEWQQFKAPDFELLKERLKAPVIFDGRNLYDPERMARHGF
HYYPMGRGQSCSLPINEASLAQEDGVRLLRQA*
AnnotationID:961GeneID:952
AnnotatorUID: diggins
Modification Date/Time: 2005-07-10 17:05:24
Gene Name:
Confidence Code:3
GeneProduct:putative nucleotide sugar dehydrogenase
Cell Localization:()
Synonyms:PA3559
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative UDP-glucose dehydrogenase
Functional Category Confidence Code:5
COGs:COG1004,KOG2666,COG0677
Secondary Functional Category(ies):cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56384.1| (AE016866) UDP-glucose 6-dehydrogenase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 464

 Score =  704 bits (1816), Expect = 0.0
 Identities = 341/447 (76%), Positives = 388/447 (86%)

>emb|CAC90982.1| (AJ414151) putative nucleotide sugar dehydrogenase [Yersinia pestis
           CO92]
          Length = 448

 Score =  595 bits (1533), Expect = e-169
 Identities = 290/447 (64%), Positives = 355/447 (79%), Gaps = 2/447 (0%)

>gb|AAF84415.1|AE003988_2 (AE003988) UDP-glucose dehydrogenase [Xylella fastidiosa 9a5c]
          Length = 450

 Score =  519 bits (1336), Expect = e-146
 Identities = 259/447 (57%), Positives = 334/447 (74%), Gaps = 5/447 (1%)








 
Structural Features:
COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase 
[Cell envelope biogenesis, outer membrane] 
CD-Length = 414 residues, 100.0% aligned
Score =  594 bits (1532), Expect = 2e-170
Identities = 229/425 (53%), Positives = 291/425 (68%), Gaps = 11/425 (2%)

KOG2666, UDP-glucose/GDP-mannose dehydrogenase 
[Carbohydrate transport and metabolism, Signal transduction mechanisms]
CD-Length = 481 residues,  97.1% aligned
Score =  259 bits (664), Expect = 7e-70
CD-Length = 481 residues,  97.1% aligned
Score =  259 bits (664), Expect = 7e-70
Identities = 156/475 (32%), Positives = 243/475 (51%), Gaps = 44/475 (9%)

COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 436 residues,  97.0% aligned
Score =  239 bits (611), Expect = 1e-63
Identities = 126/434 (29%), Positives = 209/434 (48%), Gaps = 14/434 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1907




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19049




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31987




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:952_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:952
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1686
                           PA3559_tr
                           translation of PA3559
                           464
                           99.56
                           99.78
                           0
                           2406.0
     

     
     
60225
                           gb|AAG06947.1|AE004776_10
                           (AE004776) probable nucleotide sugar dehydrogenase [Pseudomonas aeruginosa PAO1]
                           464
                           99.56
                           99.78
                           0
                           2406.0
     

     
     
60226
                           gb|AAO56384.1|
                           (AE016866) UDP-glucose 6-dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000]
                           469
                           73.13
                           83.58
                           10
                           1806.0
     

     
     
60227
                           emb|CAE14874.1|
                           (BX571867) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           464
                           62.50
                           76.07
                           17
                           1534.0
     

     
     
60229
                           emb|CAC90982.1|
                           (AJ414151) putative nucleotide sugar dehydrogenase [Yersinia pestis CO92]
                           466
                           62.23
                           76.18
                           20
                           1534.0
     

     






      

          
GC ORFID: 43954How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3559Glimmer Score: 

          
Start: 3383096Stop: 3384490

          
Length: 1395


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3559 translation of PA3559Homolog Bit Score 931.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2590 (ORF: BLASTX 704.0), t_PA2022 (ORF: BLASTX 456.0), psyr_15may02_Scaffold1_revised_gene705 (ORF: BLASTX 410.0), t_PA3559 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGATCAGCGTATTCGGCAGTGGCTATGTAGGACTGGTGCAGGCCGCCGTCCTCGCCGAAGTGGGCCAC 
GATGTACTGTGCATGGACATCGACCGGAACAAGGTCGAACGCCTCGCGCAGGGCCTCGCCAGCATCTACGAA 
CCCGGGCTCGACGCCTTGCTGCGCGAAGGCCTGGACAGCGGCCGCCTGCGTTTCAGCAGCGATGCGCGCCTC 
GCCGTGGAACACGGCCGGGTGCAGTTCATCGCGGTCGGTACCCCGCCTGGCGAGGACGGCGCGGCCGATCTC 
GGCGCGGTCTTCGCGGTGGCCGATGCCATCGCCGAGCATCGCCGCAAGCCCGTCATCGTGGTGGAGAAATCG 
ACCGTCCCGGTAGGCACCGGCGACCGCCTGCGCGCGCACATCGAGCGGCGCCTGGAAGCCGACGGACGCGAG 
CTGGAATTCGAGATCGTCTCCAACCCGGAATTCCTCAAGGAAGGCTCCGCCGTCGCCGACTGCCGGCGCCCG 
GACCGCATCGTGGTCGGCTGCGACAACGAAGAGGTGCGCCAGGTGATGCGCGAACTCTACGAGCCGTTCAAC 
CGCAACCACGACCGCATGCTGTTCATGGGCCTGCGCAGCGCCGAACTGACCAAGTACGCGGCGAACGGCATG 
CTGGCGACCAAGATCAGCTTCATCAACCAGATCGCCGAACTGGCCGAACACCTCGGCGCCGACATCGAGGCG 
GTGCGCCAGGGCATCGGCGCCGACCCGCGGATCGGCTACCACTTCATCTACCCCGGCTGCGGCTACGGCGGC 
TCCTGCTTCCCCAAGGACATGCGCGCGCTGATCCACAGCGCCGAGCAGGCGCATTGCTCCAGCGACCTGTTG 
CAGGCAGTGGAAGCGATCAACCGGCGGCAGAAGCACAAGCTGTTCGAACGCATCCGGGTGTTCTACGACGGC 
GACCTGCGCGGCAAGACCTTCGCCCTTTGGGGCCTGGCCTTCAAGCCGAACACCGACGACATGCGCGACGCG 
CCCAGCCGCGAACTGATGGAAGCGCTCTGGCGCCACGGCGCGCAGGTGCGCGCCTACGATCCCGAAGCCATG 
CAGGAAACCCAGCGGCTCTATGGCCACGACGAACGCCTGAGCCTGATGGGCACCCCCGAGGCGACCCTGGGA 
GGCGCCGATGCGCTGGTCATCTGCACCGAGTGGCAGCAATTCAAGGCACCGGATTTCGAGCTGCTCAAGGAG 
CGCCTGAAGGCCCCGGTGATCTTCGACGGGCGCAACCTCTACGACCCCGAGCGCATGGCCCGCCACGGCTTC 
CACTACTACCCGATGGGACGCGGGCAGTCCTGCTCGTTGCCGATCAACGAGGCCAGCCTCGCACAGGAAGAT 
GGCGTGCGCCTGTTGCGCCAGGCCTGA