ViewGene
Locus Name:
GeneID:
Location:

GeneID:951
TrivialName: PA14_25270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25270
PAO1 Ortholog Locus:PA3000
Sequence Length:1410
Protein Length:469
Start: 2210177
Stop: 2211586
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06388.1|AE004725_1 (AE004725) aromatic amino acid transport protein AroP1 [Pseudomonas aeruginosa PAO1]
Identities = 467/469 (99%), Positives = 469/469 (100%)
Sequence:
ATGGATGGTCAACATCTGCACCAGGGCGAGCTGAAGCGTGGCCTGAAGAATCGCCACATCCAGTTGATCGCG
CTGGGCGGGGCGATCGGCACCGGGCTGTTCCTCGGCTCGGCGGGCGTCATCAAGACGGCCGGCCCGTCGATG
ATCCTCGGTTACGCCATTGGCGGCTTCATCGCCTTCCTGATCATGCGCCAGCTCGGCGAGATGATCGTCGAG
GAGCCGGTGGCCGGCTCCTTCAGCCACTTCGCACACAAGTACTGGGGCGGCTTCGCCGGTTTCCTCTCCGGC
TGGAACTACTGGGTGCTGTACATCCTGGTGGGCATGTCGGAGCTGACCGCGGTGGGCAAGTACATCCAGTAC
TGGTGGCCTGACGTGCCGACCTGGGCCACGGCGGCGGCGTTTTTCGTGCTGATCAACGCGATCAACCTGGCC
AACGTGAAAGCCTTCGGCGAGACCGAGTTCTGGTTCGCGATCATCAAGGTAGCGGCGATCATCGGCATGATC
CTGCTCGGTATCTACCTGCTGGTCGGCGGCGGTGGCGGGCCGCAAGCCTCGGTGAGCAACCTGTGGGACCGC
GGCGGCTTCTTCCCCAACGGCCTCAGCGGCCTGGTGATGACCCTGGCGATCATCATGTTCTCCTTCGGTGGC
CTGGAGCTGGTGGGCATCACCGCCGCCGAGGCGTCCGAGCCGAGGAAGGTGATTCCCAAGGCGATCAACCAG
GTGATCTACCGGATCCTGATCTTCTATATCGGCGCCCTGGCGGTGCTGCTCTCGCTGTATCCATGGGACCAG
TTGGTGGAGACCATCAACGCTTCCGGCGACGACTACAGTGGCAGCCCGTTCGTGCAGATCTTCTCGTTGATC
GGCAGCGGCACCGCGGCCAACATCCTCAACTTCGTAGTCCTCACCGCGGCATTGTCGGTCTACAACAGCGGC
GTCTACTGCAACAGCCGGATGCTCTACGGCCTGGCCGCCCAGGGCGACGCGCCGAAGGTGCTGATGTCGGTG
GACCGCCGGGGCGTGCCGGTGCTGTCGATCCTGGTCTCGGCGCTGATCACCTTCCTCTGCGTGATCGTCAAC
TACGTATTGCCGCACAAGGCGCTGGAACTGCTGATGTCGCTGGTGGTGGCGGCGCTGGTGATCAACTGGGCG
ATGATCAGCCTGTCGCACCTGAAGTTCCGCGCGGCGATGAAGCGGCAGGGCGTGGACACCTTCTTCAAGGCA
CTCTGGTCGCCGTTCAGCAACTACCTGTGCCTGGCCTTCGTGGTGTTCATCCTTGGCATCATGCTGATGATC
CCCGGGATCAACATCTCGGTGTACGCCATTCCATTCTGGCTGCTGCTGATGTGGTTGTGCTACCGGGTCAAG
CTGTCGCTGGCGGAAAGGCGCGGGCTCGGCCAGCAGGCCTGA
Translation:
MDGQHLHQGELKRGLKNRHIQLIALGGAIGTGLFLGSAGVIKTAGPSMILGYAIGGFIAFLIMRQLGEMIVE
EPVAGSFSHFAHKYWGGFAGFLSGWNYWVLYILVGMSELTAVGKYIQYWWPDVPTWATAAAFFVLINAINLA
NVKAFGETEFWFAIIKVAAIIGMILLGIYLLVGGGGGPQASVSNLWDRGGFFPNGLSGLVMTLAIIMFSFGG
LELVGITAAEASEPRKVIPKAINQVIYRILIFYIGALAVLLSLYPWDQLVETINASGDDYSGSPFVQIFSLI
GSGTAANILNFVVLTAALSVYNSGVYCNSRMLYGLAAQGDAPKVLMSVDRRGVPVLSILVSALITFLCVIVN
YVLPHKALELLMSLVVAALVINWAMISLSHLKFRAAMKRQGVDTFFKALWSPFSNYLCLAFVVFILGIMLMI
PGINISVYAIPFWLLLMWLCYRVKLSLAERRGLGQQA*
AnnotationID:960GeneID:951
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 17:05:51
Gene Name:aroP1
Confidence Code:2
GeneProduct:aromatic amino acid transport protein AroP1
Cell Localization:()
Synonyms:aroP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:aromatic amino acid permease
Functional Category Confidence Code:5
COGs:COG1113,COG0833,pfam00324
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55336.1| (AE016862) aromatic amino acid permease [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 469

 Score =  729 bits (1882), Expect = 0.0
 Identities = 357/448 (79%), Positives = 392/448 (87%)

>gb|AAN70070.1|AE016646_7 (AE016790) aromatic amino acid transporter [Pseudomonas putida
           KT2440]
          Length = 472

 Score =  717 bits (1850), Expect = 0.0
 Identities = 352/456 (77%), Positives = 390/456 (85%)

>gb|AAM84352.1|AE013678_7 (AE013678) aromatic amino acid transport protein [Yersinia pestis
           KIM]
          Length = 466

 Score =  643 bits (1658), Expect = 0.0
 Identities = 317/447 (70%), Positives = 367/447 (82%), Gaps = 9/447 (2%)






 
Structural Features:
COG1113, AnsP, Gamma-aminobutyrate permease and related permeases 
[Amino acid transport and metabolism]
CD-Length = 462 residues,  99.8% aligned
Score =  549 bits (1416), Expect = 3e-157
Identities = 267/470 (56%), Positives = 326/470 (69%), Gaps = 11/470 (2%)

COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 541 residues,  85.2% aligned
Score =  382 bits (982), Expect = 7e-107
Identities = 193/462 (41%), Positives = 264/462 (57%), Gaps = 14/462 (3%)

pfam00324, AA_permease, Amino acid permease.
CD-Length = 473 residues,  97.3% aligned
Score =  264 bits (677), Expect = 1e-71
Identities = 186/463 (40%), Positives = 244/463 (52%), Gaps = 31/463 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19047




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36047




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:951_cdd.html


    		




 
URL:

















    ReferenceID:36473




  
Author/Investigator(s):
        Honore N, Cole ST.





  
Title:
        Nucleotide sequence of the aroP gene encoding the general aromatic amino acid transport protein of Escherichia coli K-12: homology with yeast transport proteins.




  
PubMed:
        2408019


MedLine:
        




    
Source:
Nucleic Acids Res. 1990 Feb 11;18(3):653.

Erratum in:
    * Nucleic Acids Res 1990 Mar 11;18(5):1332.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2408019









           
Homologs By Global Alignment 

           

       



     
Gene ID:951
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1682
                           PA3000_tr
                           translation of PA3000
                           469
                           99.57
                           99.99
                           0
                           2405.0
     

     
     
60103
                           gb|AAG06388.1|AE004725_1
                           (AE004725) aromatic amino acid transport protein AroP1 [Pseudomonas aeruginosa PAO1]
                           469
                           99.57
                           99.99
                           0
                           2405.0
     

     
     
1683
                           PA0866_tr
                           translation of PA0866
                           472
                           80.29
                           88.34
                           3
                           2007.0
     

     
     
60104
                           gb|AAG04255.1|AE004521_6
                           (AE004521) aromatic amino acid transport protein AroP2 [Pseudomonas aeruginosa PAO1]
                           472
                           80.29
                           88.34
                           3
                           2007.0
     

     
     
60105
                           gb|AAO55336.1|
                           (AE016862) aromatic amino acid permease [Pseudomonas syringae pv. tomato str. DC3000]
                           473
                           76.32
                           83.93
                           8
                           1877.0
     

     






      

          
GC ORFID: 43953How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3000Glimmer Score: 

          
Start: 2743749Stop: 2742340

          
Length: 1410


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3000 translation of PA3000Homolog Bit Score 931.0

          
Other Homologs:  t_PA0866 (ORF: BLASTX 779.0), psyr_15may02_Scaffold8_revised_gene7800 (ORF: BLASTX 730.0), t_PA0789 (ORF: BLASTX 405.0), psyr_15may02_Scaffold6_revised_gene6904 (ORF: BLASTX 397.0), t_PA5097 (ORF: BLASTX 384.0), t_PA3000 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGGTCAACATCTGCACCAGGGCGAGCTGAAGCGTGGCCTGAAGAATCGCCACATCCAGTTGATCGCG 
CTGGGCGGGGCGATCGGCACCGGGCTGTTCCTCGGCTCGGCGGGCGTCATCAAGACGGCCGGCCCGTCGATG 
ATCCTCGGTTACGCCATTGGCGGCTTCATCGCCTTCCTGATCATGCGCCAGCTCGGCGAGATGATCGTCGAG 
GAGCCGGTGGCCGGCTCCTTCAGCCACTTCGCACACAAGTACTGGGGCGGCTTCGCCGGTTTCCTCTCCGGC 
TGGAACTACTGGGTGCTGTACATCCTGGTGGGCATGTCGGAGCTGACCGCGGTGGGCAAGTACATCCAGTAC 
TGGTGGCCTGACGTGCCGACCTGGGCCACGGCGGCGGCGTTTTTCGTGCTGATCAACGCGATCAACCTGGCC 
AACGTGAAAGCCTTCGGCGAGACCGAGTTCTGGTTCGCGATCATCAAGGTAGCGGCGATCATCGGCATGATC 
CTGCTCGGTATCTACCTGCTGGTCGGCGGCGGTGGCGGGCCGCAAGCCTCGGTGAGCAACCTGTGGGACCGC 
GGCGGCTTCTTCCCCAACGGCCTCAGCGGCCTGGTGATGACCCTGGCGATCATCATGTTCTCCTTCGGTGGC 
CTGGAGCTGGTGGGCATCACCGCCGCCGAGGCGTCCGAGCCGAGGAAGGTGATTCCCAAGGCGATCAACCAG 
GTGATCTACCGGATCCTGATCTTCTATATCGGCGCCCTGGCGGTGCTGCTCTCGCTGTATCCATGGGACCAG 
TTGGTGGAGACCATCAACGCTTCCGGCGACGACTACAGTGGCAGCCCGTTCGTGCAGATCTTCTCGTTGATC 
GGCAGCGGCACCGCGGCCAACATCCTCAACTTCGTAGTCCTCACCGCGGCATTGTCGGTCTACAACAGCGGC 
GTCTACTGCAACAGCCGGATGCTCTACGGCCTGGCCGCCCAGGGCGACGCGCCGAAGGTGCTGATGTCGGTG 
GACCGCCGGGGCGTGCCGGTGCTGTCGATCCTGGTCTCGGCGCTGATCACCTTCCTCTGCGTGATCGTCAAC 
TACGTATTGCCGCACAAGGCGCTGGAACTGCTGATGTCGCTGGTGGTGGCGGCGCTGGTGATCAACTGGGCG 
ATGATCAGCCTGTCGCACCTGAAGTTCCGCGCGGCGATGAAGCGGCAGGGCGTGGACACCTTCTTCAAGGCA 
CTCTGGTCGCCGTTCAGCAACTACCTGTGCCTGGCCTTCGTGGTGTTCATCCTTGGCATCATGCTGATGATC 
CCCGGGATCAACATCTCGGTGTACGCCATTCCATTCTGGCTGCTGCTGATGTGGTTGTGCTACCGGGTCAAG 
CTGTCGCTGGCGGAAAGGCGCGGGCTCGGCCAGCAGGCCTGA