ViewGene

Locus Name:
GeneID:
Location:

GeneID:950
TrivialName: PA14_29850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29850
PAO1 Ortholog Locus:PA2649
Sequence Length:1461
Protein Length:486
Start: 2585640
Stop: 2584180
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06037.1|AE004693_8 (AE004693) NADH dehydrogenase I chain N [Pseudomonas aeruginosa PAO1]
Identities = 486/486 (100%), Positives = 486/486 (100%)
Sequence:
ATGACCTTTACGATCCAACACTTCATCGCGCTCCTGCCACTGCTGATCACCAGCGCCACCCTGGTGGTGGTG
ATGCTGGCGGTAGCCTGGAAACGCAATCACTCGTTCACCGCCACTCTCTCGGTGATCGGCCTCAACCTGGCC
CTGCTGTCGCTGCTGCCGGTCCTCGGCGTCACCCCGATCGAGGTGACCCCGCTGGTGCTGGTGGACAACTAC
GCCTGCTTCTACATGGCCCTGGTGCTGGTCTCCGCCCTGGCCTGCGTGACCCTCGCCCACGCCTACATGGAA
AGCTATCCGGGTAACCGCGAAGAGCTGTACCTGCTCCTGCTGCTGGCCACGGCCGGCGGCCTGGTGCTGGTC
AGCGCGCAGCACCTGGCCAGCCTGTTCATCGGCCTGGAGCTGCTCTCGGTCCCGGTCTACGGGATGGTCGCC
TACGCCTTCTTCAACAAGCGCTCGCTGGAAGCCGGCATCAAGTACACCGTGCTCTCGGCCGCCGGCTCCGCC
TTCCTGCTGTTCGGCATGGCCCTGCTCTACGCCGAGTCCGGTACCCTGGGCTTCGCCGGCCTTGGCGCCAAG
GTCGCCGAGCACGTGCTGAGCGGTCCGCTGGTCAGCGTTGGCGTCGGCATGATGCTGGTCGGCCTGGGCTTC
AAGCTGTCGCTGGTGCCCTTCCACCTGTGGACCCCGGACGTCTACGAAGGCGCCCCGGCGCCCGTCTCGGCG
TTCCTCGCCACCGCCAGCAAGGTCGCGGTGTTCGCCGTGCTGCTGCGGCTGTTCCAGATCGCCCCGGCGGCC
CTGGACAACCAACTGCTGAACATCTCCCTGAGCGTCATCGCGGTCGCCTCGATCCTCTTCGGCAACCTGCTG
GCACTGACCCAGAGCAACATCAAGCGCCTGCTCGGCTACTCGTCCATCGCCCACCTGGGCTACCTGCTGGTC
GCCCTGATCGCCAGCAAGGGCATGGCCGTGGAAGCGGTCGGCGTCTACCTGGCCACCTACGTACTGACCTCC
CTCGGCGCGTTCGGCGTGATCACCCTGATGTCCACCCCGTACAGCGGCCGCGACGCCGATGCGCTGTTCGAG
TACCGCGGCCTGTTCTGGCGCCGGCCGGTGCTGACCGCGGTGATGACCGTGATGATGCTGTCGCTGGCAGGC
ATCCCGCTGACCGCCGGCTTCATCGGCAAGTTCTACGTGATCGCGGTCGGCGTCGAGTCGCACCTGTGGTGG
CTGATCGGCGCCCTGGTGCTGGGCAGCGCCATCGGCCTGTACTACTACCTGCGGGTCATGGTCACCCTGTTC
CTGGTCGAGCCCGGCATCCGCCAGCACGACGCACCGTTCAACTGGGGCCAGCGCGCCGGCGGCATCATGCTG
GTGGCCATCGCCCTGCTGGCGTTCTTCCTCGGCGTCTACCCGCAGCCGCTGCTGGAAATCCTCCAGCATTCC
GGCCTGGCCCTCGCCGGCTGA
Translation:
MTFTIQHFIALLPLLITSATLVVVMLAVAWKRNHSFTATLSVIGLNLALLSLLPVLGVTPIEVTPLVLVDNY
ACFYMALVLVSALACVTLAHAYMESYPGNREELYLLLLLATAGGLVLVSAQHLASLFIGLELLSVPVYGMVA
YAFFNKRSLEAGIKYTVLSAAGSAFLLFGMALLYAESGTLGFAGLGAKVAEHVLSGPLVSVGVGMMLVGLGF
KLSLVPFHLWTPDVYEGAPAPVSAFLATASKVAVFAVLLRLFQIAPAALDNQLLNISLSVIAVASILFGNLL
ALTQSNIKRLLGYSSIAHLGYLLVALIASKGMAVEAVGVYLATYVLTSLGAFGVITLMSTPYSGRDADALFE
YRGLFWRRPVLTAVMTVMMLSLAGIPLTAGFIGKFYVIAVGVESHLWWLIGALVLGSAIGLYYYLRVMVTLF
LVEPGIRQHDAPFNWGQRAGGIMLVAIALLAFFLGVYPQPLLEILQHSGLALAG*
AnnotationID:959GeneID:950
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 12:12:11
Gene Name:nuoN
Confidence Code:2
GeneProduct:NADH dehydrogenase I chain N
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:NADH:ubiquinone oxidoreductase subunit 2 (chain N)
Functional Category Confidence Code:5
COGs:COG1007
Secondary Functional Category(ies):
EC Number:1.6.5.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAL89576.1| (AF281148) NADH dehydrogenase I subunit N [Pseudomonas fluorescens]
          Length = 487

 Score =  753 bits (1944), Expect = 0.0
 Identities = 376/486 (77%), Positives = 434/486 (89%), Gaps = 5/486 (1%)

>gb|AAO56855.1| (AE016868) NADH dehydrogenase I, N subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 489

 Score =  734 bits (1896), Expect = 0.0
 Identities = 370/490 (75%), Positives = 429/490 (87%), Gaps = 5/490 (1%)

>gb|AAM85211.1|AE013767_8 (AE013767) NADH dehydrogenase I chain N [Yersinia pestis KIM]
          Length = 487

 Score =  612 bits (1578), Expect = e-174
 Identities = 302/482 (62%), Positives = 391/482 (81%), Gaps = 5/482 (1%)
Structural Features:
COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) 
[Energy production and conversion]
CD-Length = 475 residues, 100.0% aligned
Score =  339 bits (872), Expect = 4e-94
Identities = 213/483 (44%), Positives = 293/483 (60%), Gaps = 9/483 (1%)

Genomic Context:
Comment:
ReferenceID:1903
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19045
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33197
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:950_cdd.html
URL:
ReferenceID:34584
Author/Investigator(s): Camacho Carvajal MM, Wijfjes AH, Mulders IH, Lugtenberg BJ, Bloemberg GV.
Title: Characterization of NADH dehydrogenases of Pseudomonas fluorescens WCS365 and their role in competitive root colonization.
PubMed: 12118882
MedLine:
Source:
Mol Plant Microbe Interact. 2002 Jul;15(7):662-71.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12118882
ReferenceID:34585
Author/Investigator(s): Dupuis A, Peinnequin A, Chevallet M, Lunardi J, Darrouzet E, Pierrard B, Procaccio V, Issartel JP.
Title: Identification of five Rhodobacter capsulatus genes encoding the equivalent of ND subunits of the mitochondrial NADH-ubiquinone oxidoreductase.
PubMed: 8566820
MedLine:
Source:
Gene. 1995 Dec 29;167(1-2):99-104.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8566820
Homologs By Global Alignment
Gene ID:950

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1681 PA2649_tr translation of PA2649 486 99.99 99.99 0 2406.0
60081 gb|AAG06037.1|AE004693_8 (AE004693) NADH dehydrogenase I chain N [Pseudomonas aeruginosa PAO1] 486 99.99 99.99 0 2406.0
60082 gb|AAL89576.1| (AF281148) NADH dehydrogenase I subunit N [Pseudomonas fluorescens] 490 76.73 88.57 7 1945.0
60083 gb|AAO56855.1| (AE016868) NADH dehydrogenase I, N subunit [Pseudomonas syringae pv. tomato str. DC3000] 490 75.51 87.55 5 1901.0
60084 gb|AAN69714.1|AE016607_8 (AE016789) NADH dehydrogenase I, N subunit [Pseudomonas putida KT2440] 490 75.10 87.14 5 1894.0
GC ORFID: 43952How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2649Glimmer Score:
Start: 2368286Stop: 2369746
Length: 1461
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2649 translation of PA2649Homolog Bit Score 931.0
Other Homologs: psyr_15may02_Scaffold17_revised_gene2777 (ORF: BLASTX 736.0), t_PA2649 (ORF: GLIMMER)
GC ORF Sequence
ATGACCTTTACGATCCAACACTTCATCGCGCTCCTGCCACTGCTGATCACCAGCGCCACCCTGGTGGTGGTG
ATGCTGGCGGTAGCCTGGAAACGCAATCACTCGTTCACCGCCACTCTCTCGGTGATCGGCCTCAACCTGGCC
CTGCTGTCGCTGCTGCCGGTCCTCGGCGTCACCCCGATCGAGGTGACCCCGCTGGTGCTGGTGGACAACTAC
GCCTGCTTCTACATGGCCCTGGTGCTGGTCTCCGCCCTGGCCTGCGTGACCCTCGCCCACGCCTACATGGAA
AGCTATCCGGGTAACCGCGAAGAGCTGTACCTGCTCCTGCTGCTGGCCACGGCCGGCGGCCTGGTGCTGGTC
AGCGCGCAGCACCTGGCCAGCCTGTTCATCGGCCTGGAGCTGCTCTCGGTCCCGGTCTACGGGATGGTCGCC
TACGCCTTCTTCAACAAGCGCTCGCTGGAAGCCGGCATCAAGTACACCGTGCTCTCGGCCGCCGGCTCCGCC
TTCCTGCTGTTCGGCATGGCCCTGCTCTACGCCGAGTCCGGTACCCTGGGCTTCGCCGGCCTTGGCGCCAAG
GTCGCCGAGCACGTGCTGAGCGGTCCGCTGGTCAGCGTTGGCGTCGGCATGATGCTGGTCGGCCTGGGCTTC
AAGCTGTCGCTGGTGCCCTTCCACCTGTGGACCCCGGACGTCTACGAAGGCGCCCCGGCGCCCGTCTCGGCG
TTCCTCGCCACCGCCAGCAAGGTCGCGGTGTTCGCCGTGCTGCTGCGGCTGTTCCAGATCGCCCCGGCGGCC
CTGGACAACCAACTGCTGAACATCTCCCTGAGCGTCATCGCGGTCGCCTCGATCCTCTTCGGCAACCTGCTG
GCACTGACCCAGAGCAACATCAAGCGCCTGCTCGGCTACTCGTCCATCGCCCACCTGGGCTACCTGCTGGTC
GCCCTGATCGCCAGCAAGGGCATGGCCGTGGAAGCGGTCGGCGTCTACCTGGCCACCTACGTACTGACCTCC
CTCGGCGCGTTCGGCGTGATCACCCTGATGTCCACCCCGTACAGCGGCCGCGACGCCGATGCGCTGTTCGAG
TACCGCGGCCTGTTCTGGCGCCGGCCGGTGCTGACCGCGGTGATGACCGTGATGATGCTGTCGCTGGCAGGC
ATCCCGCTGACCGCCGGCTTCATCGGCAAGTTCTACGTGATCGCGGTCGGCGTCGAGTCGCACCTGTGGTGG
CTGATCGGCGCCCTGGTGCTGGGCAGCGCCATCGGCCTGTACTACTACCTGCGGGTCATGGTCACCCTGTTC
CTGGTCGAGCCCGGCATCCGCCAGCACGACGCACCGTTCAACTGGGGCCAGCGCGCCGGCGGCATCATGCTG
GTGGCCATCGCCCTGCTGGCGTTCTTCCTCGGCGTCTACCCGCAGCCGCTGCTGGAAATCCTCCAGCATTCC
GGCCTGGCCCTCGCCGGCTGA