ViewGene
Locus Name:
GeneID:
Location:

GeneID:948
TrivialName: PA14_36320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36320
PAO1 Ortholog Locus:PA2194
Sequence Length:1395
Protein Length:464
Start: 3236069
Stop: 3234675
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05582.1|AE004646_3 (AE004646) hydrogen cyanide synthase HcnB [Pseudomonas aeruginosa PAO1]
Identities = 462/464 (99%), Positives = 464/464 (100%)
Sequence:
ATGAACCTGCGCCCGGTGATCGTCGGCGGCGGCTCGGCCGGCATGGCCGCAGCCATCGAGCTGGCCAGGCGC
GGGGTCCCCTGCATCCTCTTCGACGAGGCCTCGCGTCCCGGCGGGGTGGTCTATCGCGGCCCCTTGCGGGCC
GGCGTCGATCCGGCCTACCTCGGCGCGCGCTACACCCGGATGCTGGAAAAACTGCGGCGCGATTTCTCCGCc
TGCGCCGGGCACATCGACCTGCGCCTGAACAGCCGCGTGGTCGGCGGCGACGGCCAGCGCCTGATGGTCCTC
GACGAGGCGGAACGGCTGCACGAGGTGGAGTATTCGCACCTGCTCCTGGCCACCGGCTGCCATGAGCGCAGC
GTGCCGTTCCCCGGCTGGACCCTGCCCGGGGTGATGCTCCTCGGCGGCCTGCAATTGCAGATCAAGAGCGGC
GTGGTGAAGCCCCTGGGCGATACCCTGATCGCCGGCAGCGGCCCGCTGCTGCCACTGGTGGCCTGCCAGCTG
CATGCGGCTGGGGTACGTGTCGCCGGGGTCTACGAGGCCTGCGCGTTCGGCCGCATGGCCAGGGAAAGCCTG
GCGCTGCTGAACAAGCCGCAACTGTTCCTCGACGGCCTGAGCATGCTCGGCTATCTCAAGCTCAACGGCATT
CCGCTGCACTATGGCTGGGGCGTGGTGGAGGCCAGCGGCGAGGGGGAACTGACGGAAGTGACGGTAGCGCCC
TACGACGAAGAGTGGCGGCCCGACCTAGAAAACGCGCGACCGGTGAAGGCCAGCACCCTGGCGGTCGGCTAT
GGCTTCATCCCGCGCACCCAGCTCAGCCAGCAGTTGGGCCTGGAGCACGGCTTCAGCGACGACGGATACCTG
CGCGCGGAATGCAACGTCTGGCAGCAGAGCAGCCAACCGCACATCCACCTGGCCGGCGACATGGCGGGTATC
CGCGGCGGCGAGGCGGCGATGATCGGCGGGCGCATCGCGGCCTTGTCGATCCTCCTGCAACGCGAGGCCATC
GCGCCCGCCGAGGCCATCGAACGCCGAGAATCCCATCTCGCCCGGCTGGAGGCGATCAAGCGCTTCCGCGCC
GGAGTCGAGCGCTACACCCAGCGCGGCGCCCGCCAGGTCGAACTGGCGCGGGCCGATACGGTTATCTGCCGC
TGCGAACAGGTCACCCGCGGCGACATCGAGCGCGCGCTCGAACAGGGCGTGCAGGACATCGCCGGGCTGAAG
ATGCGCACCCGCGCCGGCATGGGCGACTGCCAGGGGCGGATGTGCATCGGCTACTGCAGCGATCGCCTGCGC
CGCGCCACCGGACGCCACGACGTCGGCTGGCTGCGACCGCGTTTCCCGATCGATCCGATCCCGTTTTCCGCA
TTCCAGAACCTCGGTACGGAAGCCTGA
Translation:
MNLRPVIVGGGSAGMAAAIELARRGVPCILFDEASRPGGVVYRGPLRAGVDPAYLGARYTRMLEKLRRDFSA
CAGHIDLRLNSRVVGGDGQRLMVLDEAERLHEVEYSHLLLATGCHERSVPFPGWTLPGVMLLGGLQLQIKSG
VVKPLGDTLIAGSGPLLPLVACQLHAAGVRVAGVYEACAFGRMARESLALLNKPQLFLDGLSMLGYLKLNGI
PLHYGWGVVEASGEGELTEVTVAPYDEEWRPDLENARPVKASTLAVGYGFIPRTQLSQQLGLEHGFSDDGYL
RAECNVWQQSSQPHIHLAGDMAGIRGGEAAMIGGRIAALSILLQREAIAPAEAIERRESHLARLEAIKRFRA
GVERYTQRGARQVELARADTVICRCEQVTRGDIERALEQGVQDIAGLKMRTRAGMGDCQGRMCIGYCSDRLR
RATGRHDVGWLRPRFPIDPIPFSAFQNLGTEA*
AnnotationID:957GeneID:948
AnnotatorUID: diggins
Modification Date/Time: 2006-01-18 21:09:24
Gene Name:hcnB
Confidence Code:1
GeneProduct:hydrogen cyanide synthase HcnB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC38595.1| (AF053760) hydrogen cyanide synthase HcnB [Pseudomonas fluorescens]
          Length = 469

 Score =  664 bits (1713), Expect = 0.0
 Identities = 327/458 (71%), Positives = 374/458 (81%), Gaps = 1/458 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1899




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38243




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:948_cdd.html


    		




 
URL:

















    ReferenceID:38244




  
Author/Investigator(s):
        Pessi G, Haas D.





  
Title:
        Transcriptional control of the hydrogen cyanide biosynthetic genes hcnABC by the anaerobic regulator ANR and the quorum-sensing regulators LasR and RhlR in Pseudomonas aeruginosa.




  
PubMed:
        11092854


MedLine:
        




    
Source:
J Bacteriol. 2000 Dec;182(24):6940-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=11092854

















    ReferenceID:38248




  
Author/Investigator(s):
        Laville J, Blumer C, Von Schroetter C, Gaia V, Defago G, Keel C, Haas D.





  
Title:
        Characterization of the hcnABC gene cluster encoding hydrogen cyanide synthase and anaerobic regulation by ANR in the strictly aerobic biocontrol agent Pseudomonas fluorescens CHA0.




  
PubMed:
        9620970


MedLine:
        




    
Source:
J Bacteriol. 1998 Jun;180(12):3187-96.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=9620970









           
Homologs By Global Alignment 

           

       



     
Gene ID:948
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1679
                           PA2194_tr
                           translation of PA2194
                           464
                           99.56
                           99.99
                           0
                           2409.0
     

     
     
60023
                           gb|AAG05582.1|AE004646_3
                           (AE004646) hydrogen cyanide synthase HcnB [Pseudomonas aeruginosa PAO1]
                           464
                           99.56
                           99.99
                           0
                           2409.0
     

     
     
60024
                           gb|AAF21029.2|AF208523_2
                           (AF208523) hydrogen cyanide synthase HcnB [Pseudomonas aeruginosa]
                           464
                           99.35
                           99.78
                           0
                           2403.0
     

     
     
60025
                           gb|AAC38595.1|
                           (AF053760) hydrogen cyanide synthase HcnB [Pseudomonas fluorescens]
                           469
                           69.93
                           79.95
                           5
                           1713.0
     

     
     
60026
                           gb|AAQ59358.1|
                           (AE016916) hydrogen cyanide synthase HcnB [Chromobacterium violaceum ATCC 12472]
                           468
                           64.95
                           78.41
                           4
                           1615.0
     

     






      

          
GC ORFID: 43950How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2194Glimmer Score: 

          
Start: 1717847Stop: 1719241

          
Length: 1395


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2194 translation of PA2194Homolog Bit Score 932.0

          
Other Homologs:  t_PA2194 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGCGCCCGGTGATCGTCGGCGGCGGCTCGGCCGGCATGGCCGCAGCCATCGAGCTGGCCAGGCGC 
GGGGTCCCCTGCATCCTCTTCGACGAGGCCTCGCGTCCCGGCGGGGTGGTCTATCGCGGCCCCTTGCGGGCC 
GGCGTCGATCCGGCCTACCTCGGCGCGCGCTACACCCGGATGCTGGAAAAACTGCGGCGCGATTTCTCCGCc 
TGCGCCGGGCACATCGACCTGCGCCTGAACAGCCGCGTGGTCGGCGGCGACGGCCAGCGCCTGATGGTCCTC 
GACGAGGCGGAACGGCTGCACGAGGTGGAGTATTCGCACCTGCTCCTGGCCACCGGCTGCCATGAGCGCAGC 
GTGCCGTTCCCCGGCTGGACCCTGCCCGGGGTGATGCTCCTCGGCGGCCTGCAATTGCAGATCAAGAGCGGC 
GTGGTGAAGCCCCTGGGCGATACCCTGATCGCCGGCAGCGGCCCGCTGCTGCCACTGGTGGCCTGCCAGCTG 
CATGCGGCTGGGGTACGTGTCGCCGGGGTCTACGAGGCCTGCGCGTTCGGCCGCATGGCCAGGGAAAGCCTG 
GCGCTGCTGAACAAGCCGCAACTGTTCCTCGACGGCCTGAGCATGCTCGGCTATCTCAAGCTCAACGGCATT 
CCGCTGCACTATGGCTGGGGCGTGGTGGAGGCCAGCGGCGAGGGGGAACTGACGGAAGTGACGGTAGCGCCC 
TACGACGAAGAGTGGCGGCCCGACCTAGAAAACGCGCGACCGGTGAAGGCCAGCACCCTGGCGGTCGGCTAT 
GGCTTCATCCCGCGCACCCAGCTCAGCCAGCAGTTGGGCCTGGAGCACGGCTTCAGCGACGACGGATACCTG 
CGCGCGGAATGCAACGTCTGGCAGCAGAGCAGCCAACCGCACATCCACCTGGCCGGCGACATGGCGGGTATC 
CGCGGCGGCGAGGCGGCGATGATCGGCGGGCGCATCGCGGCCTTGTCGATCCTCCTGCAACGCGAGGCCATC 
GCGCCCGCCGAGGCCATCGAACGCCGAGAATCCCATCTCGCCCGGCTGGAGGCGATCAAGCGCTTCCGCGCC 
GGAGTCGAGCGCTACACCCAGCGCGGCGCCCGCCAGGTCGAACTGGCGCGGGCCGATACGGTTATCTGCCGC 
TGCGAACAGGTCACCCGCGGCGACATCGAGCGCGCGCTCGAACAGGGCGTGCAGGACATCGCCGGGCTGAAG 
ATGCGCACCCGCGCCGGCATGGGCGACTGCCAGGGGCGGATGTGCATCGGCTACTGCAGCGATCGCCTGCGC 
CGCGCCACCGGACGCCACGACGTCGGCTGGCTGCGACCGCGTTTCCCGATCGATCCGATCCCGTTTTCCGCA 
TTCCAGAACCTCGGTACGGAAGCCTGA