ViewGene
Locus Name:
GeneID:
Location:

GeneID:947
TrivialName: PA14_38610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38610
PAO1 Ortholog Locus:PA2002
Sequence Length:1425
Protein Length:474
Start: 3445728
Stop: 3444304
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05390.1|AE004626_9 (AE004626) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 474/474 (100%), Positives = 474/474 (100%)
Sequence:
ATGACCGCTATCCTTCCCATCCAAGAAAGCCGCTCCGCGCGCTTCGCCATGCGTTGCTCGAACTGGGCCGAG
CGCTGGTTTCCCGACTCCTGGGTGTTCGCCGCCCTGGCCATCCTCATCGTCAGCCTGGCCGCGCTGGCCATG
GGCGCCGGACCGACCGCCACGGCGAAAGCCTTCGGTGACGGTTTCTGGAGCCTGATCCCATTCACCATGCAG
ATGGCCTTCGTGGTCATCGGCGGCTATGTGGTGGCCAGTTCAGGCCCCGCCTCGCGTCTCATCGACCTGCTC
GCGCGGGTGCCGAAGAATGGCCGCTCGGCGGTCTGCTGGGTGGCGCTGGTGTCGATGCTCGCCTCGCTGCTC
AACTGGGGCCTCAGCCTGGTCTTCGGCGGCCTGCTGGTACGCGCCCTGGCGCGCCGCAGCGACCTGCGCATG
GACTACCGCGCCGCCGGCGCCGCGGCCTACCTCGGGCTGGGCGCGGTGTGGGCGCTGGGCCTGTCGTCGTCG
GCCGCGCAGTTGCAGGCCAACCCGGCCAGCCTGCCACCGTCGATCCTGGCGATCACCGGGGTGATCCCGTTC
ACCGAGACCATCTTCCTCTGGCAGTCCGGGGTCATGCTGCTGGCGCTGATCCTGGTCTCGCTGGTGATCGCC
TACATGACCGCGCCGAGCGCCGCCAGCGCCCGCGACGCCAAGGATTGCGGGGTCGACGTGAGCTTCACCGCT
CCGGCCAGGCTGGCGCCGACCCGGCCCGGCGAGTGGCTGGAGCACAGCCCGTTGCTGATCATCCTGCTGGTA
CTGCTGGCCGGTGGCTGGCTGGTCCACGAGTTCTCGACCAAGCCGGCGATCCTGGCGATCTCCGGGTTGAAC
ACCTATAACCTGCTGTTCCTGATGCTCGGCGCGTTGCTGCACTGGCGCCCGCGCAGCTTCCTCGACGCGGTG
GCGCGCGCGGTGCCGACCACCACCGGGGTGCTGATCCAGTTCCCGCTGTACGGCTCGATCGCGGCGATCATG
ACCACGGTCAACGGCAGCGACGGCGAGACCCTGGCCCACCATATCTCGACCTTCTTCGTACAGATCGCCTCC
CACGACACCTACGCGCTGCTGATGGGCGTGTACTCGGCGGTGCTGGGCTTCTTCATTCCCTCCGGCGGCGGC
AAGTGGATCATCGAGGCGCCGTACGTGATGCAGGTAGCCAACGAGCTGCAATACCACCTCGGCTGGGCGGTG
CAGATCTACAACGCCGCCGAAGCGCTGCCGAACCTGATCAACCCGTTCTACATGCTGCCGTTGCTCGGCGTG
CTGGGGCTGAAGGCGCGCGACCTGATCGGCTTCTCGTTCGTCCAGTTGCTGGTGCATATCCCGCTGGTGCTG
GTGCTGCTCTGGGCCCTGGGCAGCACCCTGGCGTACATCCCGCCGGTGATGCCGTAG
Translation:
MTAILPIQESRSARFAMRCSNWAERWFPDSWVFAALAILIVSLAALAMGAGPTATAKAFGDGFWSLIPFTMQ
MAFVVIGGYVVASSGPASRLIDLLARVPKNGRSAVCWVALVSMLASLLNWGLSLVFGGLLVRALARRSDLRM
DYRAAGAAAYLGLGAVWALGLSSSAAQLQANPASLPPSILAITGVIPFTETIFLWQSGVMLLALILVSLVIA
YMTAPSAASARDAKDCGVDVSFTAPARLAPTRPGEWLEHSPLLIILLVLLAGGWLVHEFSTKPAILAISGLN
TYNLLFLMLGALLHWRPRSFLDAVARAVPTTTGVLIQFPLYGSIAAIMTTVNGSDGETLAHHISTFFVQIAS
HDTYALLMGVYSAVLGFFIPSGGGKWIIEAPYVMQVANELQYHLGWAVQIYNAAEALPNLINPFYMLPLLGV
LGLKARDLIGFSFVQLLVHIPLVLVLLWALGSTLAYIPPVMP*
AnnotationID:956GeneID:947
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 18:06:47
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain fatty acid transporter
Cell Localization:()
Synonyms:PA2002
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2031
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68732.1|AE016505_5 (AE016785) transporter, short-chain fatty acid transporter family
           [Pseudomonas putida KT2440]
          Length = 472

 Score =  824 bits (2128), Expect = 0.0
 Identities = 410/468 (87%), Positives = 436/468 (93%)

>emb|CAE30968.1| (BX640438) short-chain fatty acids transporter [Bordetella
           bronchiseptica]
          Length = 487

 Score =  511 bits (1317), Expect = e-144
 Identities = 254/481 (52%), Positives = 342/481 (71%), Gaps = 8/481 (1%)








 
Structural Features:
COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]
CD-Length = 446 residues, 100.0% aligned
Score =  440 bits (1133), Expect = 2e-124
Identities = 201/457 (43%), Positives = 263/457 (57%), Gaps = 16/457 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1897




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19039




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32712




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:947_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:947
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1678
                           PA2002_tr
                           translation of PA2002
                           474
                           99.99
                           99.99
                           0
                           2410.0
     

     
     
60017
                           gb|AAG05390.1|AE004626_9
                           (AE004626) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           474
                           99.99
                           99.99
                           0
                           2410.0
     

     
     
60018
                           gb|AAN68732.1|AE016505_5
                           (AE016785) transporter, short-chain fatty acid transporter family [Pseudomonas putida KT2440]
                           474
                           86.91
                           92.40
                           2
                           2125.0
     

     
     
60019
                           gb|AAO56932.1|
                           (AE016868) short-chain fatty acid transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           474
                           84.81
                           91.56
                           2
                           2081.0
     

     
     
60020
                           emb|CAE30968.1|
                           (BX640438) short-chain fatty acids transporter [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           488
                           52.04
                           70.08
                           15
                           1325.0
     

     






      

          
GC ORFID: 43949How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2002Glimmer Score: 

          
Start: 1508183Stop: 1509607

          
Length: 1425


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2002 translation of PA2002Homolog Bit Score 932.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8110 (ORF: BLASTX 808.0), t_PA2002 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCTATCCTTCCCATCCAAGAAAGCCGCTCCGCGCGCTTCGCCATGCGTTGCTCGAACTGGGCCGAG 
CGCTGGTTTCCCGACTCCTGGGTGTTCGCCGCCCTGGCCATCCTCATCGTCAGCCTGGCCGCGCTGGCCATG 
GGCGCCGGACCGACCGCCACGGCGAAAGCCTTCGGTGACGGTTTCTGGAGCCTGATCCCATTCACCATGCAG 
ATGGCCTTCGTGGTCATCGGCGGCTATGTGGTGGCCAGTTCAGGCCCCGCCTCGCGTCTCATCGACCTGCTC 
GCGCGGGTGCCGAAGAATGGCCGCTCGGCGGTCTGCTGGGTGGCGCTGGTGTCGATGCTCGCCTCGCTGCTC 
AACTGGGGCCTCAGCCTGGTCTTCGGCGGCCTGCTGGTACGCGCCCTGGCGCGCCGCAGCGACCTGCGCATG 
GACTACCGCGCCGCCGGCGCCGCGGCCTACCTCGGGCTGGGCGCGGTGTGGGCGCTGGGCCTGTCGTCGTCG 
GCCGCGCAGTTGCAGGCCAACCCGGCCAGCCTGCCACCGTCGATCCTGGCGATCACCGGGGTGATCCCGTTC 
ACCGAGACCATCTTCCTCTGGCAGTCCGGGGTCATGCTGCTGGCGCTGATCCTGGTCTCGCTGGTGATCGCC 
TACATGACCGCGCCGAGCGCCGCCAGCGCCCGCGACGCCAAGGATTGCGGGGTCGACGTGAGCTTCACCGCT 
CCGGCCAGGCTGGCGCCGACCCGGCCCGGCGAGTGGCTGGAGCACAGCCCGTTGCTGATCATCCTGCTGGTA 
CTGCTGGCCGGTGGCTGGCTGGTCCACGAGTTCTCGACCAAGCCGGCGATCCTGGCGATCTCCGGGTTGAAC 
ACCTATAACCTGCTGTTCCTGATGCTCGGCGCGTTGCTGCACTGGCGCCCGCGCAGCTTCCTCGACGCGGTG 
GCGCGCGCGGTGCCGACCACCACCGGGGTGCTGATCCAGTTCCCGCTGTACGGCTCGATCGCGGCGATCATG 
ACCACGGTCAACGGCAGCGACGGCGAGACCCTGGCCCACCATATCTCGACCTTCTTCGTACAGATCGCCTCC 
CACGACACCTACGCGCTGCTGATGGGCGTGTACTCGGCGGTGCTGGGCTTCTTCATTCCCTCCGGCGGCGGC 
AAGTGGATCATCGAGGCGCCGTACGTGATGCAGGTAGCCAACGAGCTGCAATACCACCTCGGCTGGGCGGTG 
CAGATCTACAACGCCGCCGAAGCGCTGCCGAACCTGATCAACCCGTTCTACATGCTGCCGTTGCTCGGCGTG 
CTGGGGCTGAAGGCGCGCGACCTGATCGGCTTCTCGTTCGTCCAGTTGCTGGTGCATATCCCGCTGGTGCTG 
GTGCTGCTCTGGGCCCTGGGCAGCACCCTGGCGTACATCCCGCCGGTGATGCCGTAG