ViewGene

Locus Name:
GeneID:
Location:

GeneID:946
TrivialName: PA14_04140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04140
PAO1 Ortholog Locus:PA0317
Sequence Length:1395
Protein Length:464
Start: 370829
Stop: 372223
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03706.1|AE004469_11 (AE004469) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 463/464 (99%), Positives = 464/464 (100%)
Sequence:
ATGACCCGCGAAGCCCTGATCGAATCGCTCAAGCCCCTGGTCGAGCCTGGCAAGCTGCTCGACGACGCCGCC
TCCCTGGACGCCTACGGCAAGGACTGGACCAAGCATTTCGCCCCTGCGCCGCTGGCCATCGTGTTCCCCAAG
AGCGTCGAGCAGGTCCAGGCGATCGTCCGCTGGGCCAACCAGCACAAGGTCGGTCTGGTCCCGTCGGGCGGC
CGTACCGGGCTCTCCGCCGCGGCCGTGGCGGCCAACGGCGAAGTCGTGGTGGCCTTCGACTACATGAACCGG
ATCCTCGACTTCAATGCCTTCGACCGCACCGTGGTCTGCCAGCCCGGCGTGGTTACCAAGCAACTGCAGACC
TTCGCCGAGGAAAACGGCCTGTACTACCCGGTTGACTTCGCTTCTTCCGGTTCCAGCCAGATCGGCGGCAAT
ATCGGCACCAATGCCGGCGGGATCAAGGTCATTCGCTACGGCATGACCCGTAACTGGGTGGCCGGGATGAAG
GTCGTCACCGGCAAGGGCGACCTGCTCGAGCTGAACAAGGACCTGATCAAGAACGCCACCGGCTACGACATG
CGCCAGCTGTTCATCGGCGCCGAAGGTACCCTGGGCTTCGTGGTCGAGGCGACCATGCGCCTGGAGCGCACG
CCGAAGAACCTCACCGCTATGGTCCTCGGCACGCCCGACTTCGACTCGATCATGCCGGTGCTGCATGCCTTC
CAGAGCAAGCTCGACCTGACCGCCTTCGAGTTCTTCTCCGACAAGGCCCTGGCCAAGGTCCTGGCCCGTGGC
GACGTACCACGGGCGTTCGAAACCGACTGCCCGTTCTACGCCCTGCTGGAGTTCGAGGCGACCACCGAGGAA
GTCGCCAACGAGGCGCTGGCCACCTTCGAGCACTGCGTCGAGCAGGGCTGGGTGCTGGACGGGGTGATGAGC
CAGAGCGAGCAGCAGTTGCAGAACCTGTGGAAGTTGCGCGAGTACATCTCCGAGACCATCTCCCACTGGACG
CCGTACAAGAACGACATCTCGGTCACGGTTTCCCGGGTGCCCGCCTTCCTCAAGGACATCGACGCCATCGTC
GAGGCCAACTACCCGGACTTCGAGGTGGTGTGGTTCGGCCACATCGGCGACGGCAACCTGCACCTGAACATC
CTCAAGCCGGAAAACCTCGGCAAGGACGAGTTCTTCGCCAGGTGCGCGACCGTCAACAAGTGGGTGTTCGAG
ACCGTCGAGAAGTACAACGGCTCGATTTCCGCCGAGCATGGCGTGGGCATGACCAAGCGCGACTACTTGACC
TACACCCGCTCGGAAACCGAAATTGCCTATATGAAGGCACTGAAGGCGGTGTTCGACCCCAACGGGATCATG
AATCCCGGCAAGATCTTCGCCGAGTAG
Translation:
MTREALIESLKPLVEPGKLLDDAASLDAYGKDWTKHFAPAPLAIVFPKSVEQVQAIVRWANQHKVGLVPSGG
RTGLSAAAVAANGEVVVAFDYMNRILDFNAFDRTVVCQPGVVTKQLQTFAEENGLYYPVDFASSGSSQIGGN
IGTNAGGIKVIRYGMTRNWVAGMKVVTGKGDLLELNKDLIKNATGYDMRQLFIGAEGTLGFVVEATMRLERT
PKNLTAMVLGTPDFDSIMPVLHAFQSKLDLTAFEFFSDKALAKVLARGDVPRAFETDCPFYALLEFEATTEE
VANEALATFEHCVEQGWVLDGVMSQSEQQLQNLWKLREYISETISHWTPYKNDISVTVSRVPAFLKDIDAIV
EANYPDFEVVWFGHIGDGNLHLNILKPENLGKDEFFARCATVNKWVFETVEKYNGSISAEHGVGMTKRDYLT
YTRSETEIAYMKALKAVFDPNGIMNPGKIFAE*
AnnotationID:955GeneID:946
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:49
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, FAD-binding
Cell Localization:()
Synonyms:PA0317
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0277,pfam02913,pfam01565
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70719.1|AE016715_8 (AE016793) oxidoreductase, FAD-binding, putative [Pseudomonas
           putida KT2440]
          Length = 455

 Score =  814 bits (2102), Expect = 0.0
 Identities = 393/451 (87%), Positives = 423/451 (93%)

>gb|AAO58719.1| (AE016875) oxidoreductase, FAD-binding [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 464

 Score =  799 bits (2064), Expect = 0.0
 Identities = 387/463 (83%), Positives = 423/463 (91%)
Structural Features:
COG0277, GlcD, FAD/FMN-containing dehydrogenases 
[Energy production and conversion]
CD-Length = 459 residues,  99.6% aligned
Score =  340 bits (873), Expect = 2e-94
Identities = 172/463 (37%), Positives = 247/463 (53%), Gaps = 14/463 (3%)

pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
CD-Length = 247 residues,  99.6% aligned
Score =  202 bits (516), Expect = 5e-53
Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 9/250 (3%)

pfam01565, FAD_binding_4, FAD binding domain.
CD-Length = 158 residues, 100.0% aligned
Score =  161 bits (408), Expect = 2e-40
Identities = 66/162 (40%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Genomic Context:
Comment:
ReferenceID:1895
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19037
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33662
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:946_cdd.html
URL:
Homologs By Global Alignment
Gene ID:946

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1677 PA0317_tr translation of PA0317 464 99.78 99.99 0 2412.0
60009 gb|AAG03706.1|AE004469_11 (AE004469) hypothetical protein PA0317 [Pseudomonas aeruginosa PAO1] 464 99.78 99.99 0 2412.0
60010 gb|AAN70719.1|AE016715_8 (AE016793) oxidoreductase, FAD-binding, putative [Pseudomonas putida KT2440] 465 84.51 90.96 11 2099.0
60011 gb|AAO58719.1| (AE016875) oxidoreductase, FAD-binding [Pseudomonas syringae pv. tomato str. DC3000] 464 83.40 91.16 0 2062.0
60012 gb|AAM36707.1| (AE011818) oxidoreductase [Xanthomonas axonopodis pv. citri str. 306] 474 52.95 68.98 12 1294.0
GC ORFID: 43948How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0317Glimmer Score:
Start: 6172171Stop: 6173565
Length: 1395
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0317 translation of PA0317Homolog Bit Score 933.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6524 (ORF: BLASTX 802.0), t_PA0317 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCGCGAAGCCCTGATCGAATCGCTCAAGCCCCTGGTCGAGCCTGGCAAGCTGCTCGACGACGCCGCC
TCCCTGGACGCCTACGGCAAGGACTGGACCAAGCATTTCGCCCCTGCGCCGCTGGCCATCGTGTTCCCCAAG
AGCGTCGAGCAGGTCCAGGCGATCGTCCGCTGGGCCAACCAGCACAAGGTCGGTCTGGTCCCGTCGGGCGGC
CGTACCGGGCTCTCCGCCGCGGCCGTGGCGGCCAACGGCGAAGTCGTGGTGGCCTTCGACTACATGAACCGG
ATCCTCGACTTCAATGCCTTCGACCGCACCGTGGTCTGCCAGCCCGGCGTGGTTACCAAGCAACTGCAGACC
TTCGCCGAGGAAAACGGCCTGTACTACCCGGTTGACTTCGCTTCTTCCGGTTCCAGCCAGATCGGCGGCAAT
ATCGGCACCAATGCCGGCGGGATCAAGGTCATTCGCTACGGCATGACCCGTAACTGGGTGGCCGGGATGAAG
GTCGTCACCGGCAAGGGCGACCTGCTCGAGCTGAACAAGGACCTGATCAAGAACGCCACCGGCTACGACATG
CGCCAGCTGTTCATCGGCGCCGAAGGTACCCTGGGCTTCGTGGTCGAGGCGACCATGCGCCTGGAGCGCACG
CCGAAGAACCTCACCGCTATGGTCCTCGGCACGCCCGACTTCGACTCGATCATGCCGGTGCTGCATGCCTTC
CAGAGCAAGCTCGACCTGACCGCCTTCGAGTTCTTCTCCGACAAGGCCCTGGCCAAGGTCCTGGCCCGTGGC
GACGTACCACGGGCGTTCGAAACCGACTGCCCGTTCTACGCCCTGCTGGAGTTCGAGGCGACCACCGAGGAA
GTCGCCAACGAGGCGCTGGCCACCTTCGAGCACTGCGTCGAGCAGGGCTGGGTGCTGGACGGGGTGATGAGC
CAGAGCGAGCAGCAGTTGCAGAACCTGTGGAAGTTGCGCGAGTACATCTCCGAGACCATCTCCCACTGGACG
CCGTACAAGAACGACATCTCGGTCACGGTTTCCCGGGTGCCCGCCTTCCTCAAGGACATCGACGCCATCGTC
GAGGCCAACTACCCGGACTTCGAGGTGGTGTGGTTCGGCCACATCGGCGACGGCAACCTGCACCTGAACATC
CTCAAGCCGGAAAACCTCGGCAAGGACGAGTTCTTCGCCAGGTGCGCGACCGTCAACAAGTGGGTGTTCGAG
ACCGTCGAGAAGTACAACGGCTCGATTTCCGCCGAGCATGGCGTGGGCATGACCAAGCGCGACTACTTGACC
TACACCCGCTCGGAAACCGAAATTGCCTATATGAAGGCACTGAAGGCGGTGTTCGACCCCAACGGGATCATG
AATCCCGGCAAGATCTTCGCCGAGTAG