ViewGene
Locus Name:
GeneID:
Location:

GeneID:945
TrivialName: PA14_65750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65750
PAO1 Ortholog Locus:PA4974
Sequence Length:1449
Protein Length:482
Start: 5855497
Stop: 5856945
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08359.1|AE004910_6 (AE004910) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 482/482 (100%), Positives = 482/482 (100%)
Sequence:
ATGCTGCGCAGACTCTCCCTGGCGGCCGCCGTGGCCGCTGCTACCGGTGTCGCCTGGGCCGCCCAGCCGACC
CCGCTGCCGACCAAGACCGACCTGATCAGCGTCTACAAGGAAGCCGTCGACAACAACGCCGACCTCGCCGCC
GCCCAGGCCGACTACCTGGCGCGCAAGGAAGTGGTGCCCCAGGCCCGCGCCGGCCTGCTGCCGCAACTCGGC
GCCGGCGCCCGCGTCGGAGACACCCGGATCGCATTCGACGAGCGTCCGGCGACCGTCAAGCGCAACAGCCAG
GTCGTCCAGGCCACCCTCAGCCAGCCGTTGTTCCGCGCCGACCGCTGGTTCCAGTGGCAGGCCGCCAAGGAA
ACCAGCGACCAGGCCCGGCTGGAATTCTCCGCGACCCAGCAGGACCTGATCCTGCGCAGCGCCGAGACCTAC
TTCACGGTGCTCCGCGCCCAGGACAACCTAGCCACCAGCAAGGCCGAGGAAGCCGCCTTCAAGCGCCAGCTG
GACCAGGCAAACGAGCGCTTCGACGTGGGCCTTTCCGACAAGACCGACGTGCTCGAGGCCCAGGCCAGCTAC
GACACAGCCCGCGCCAACCGGCTGATCGCCGAACAGCGCGTGGACGATGCCTTCCAGGCCCTGGTGACCCTG
ACCAACCGCGATTACAGCGCCATCGAGGGCATGCGCCACACCCTGCCAGTGGTGCCGCCGGCGCCGAACGAC
GCCAAGGCCTGGGTCGACACCGCGGTGCAGCAGAACCTGCGCCTGCTGGCCAGCAACTACGCGGTCAACGCC
GCCGAGGAAACCCTCCGCCAGCGCAAGGCCGGGCACCTGCCGACCCTCGATGCCGTGGCCCAGTACCAGAAG
GGCGACAACGACGCCCTCGGCTTCGCCAACAGCGCCGCCAATCCGCTGGTGCACTATGGCAAGTATGTCGAT
GAGCGCAGCATTGGCCTGGAACTGAACATCCCGATCTACAGCGGCGGCCTGACCTCCTCCCAGGTCCGCGAG
TCCTACCAGCGCCTCAACCAGAGCGAGCAGTCCCGCGAAGGCCAGCGCCGCCAGGTGGTGCAGGACACCCGC
AACCTGCACCGCGCGGTGAATACCGACGTCGAGCAGGTCCAGGCGCGGCGCCAGGCGATCATCTCCAACCAG
AGTTCGCTGGAAGCCACCGAGATCGGCTACCAGGTCGGCACCCGCAACATCGTCGACGTGCTCAACGCCCAG
CGCCAGCTGTACGCCGCCGTGCGCGACTACAACAACAGCCGCTACGACTACATCCTCGATACCCTGCGCCTG
AAGCAGGCGGCCGGCACCCTCAGCCCGGCCGACCTGGAGGCGCTCAGCGCCTACCTGAAGCAGGATTACGAT
CCGGACAAGGACTTCCTCCCGCCGGACCTGGCCAAGGCCGCCGCCGAGCAGTTACAGAGCAAGCCGCGCCAG
CAGTACTAG
Translation:
MLRRLSLAAAVAAATGVAWAAQPTPLPTKTDLISVYKEAVDNNADLAAAQADYLARKEVVPQARAGLLPQLG
AGARVGDTRIAFDERPATVKRNSQVVQATLSQPLFRADRWFQWQAAKETSDQARLEFSATQQDLILRSAETY
FTVLRAQDNLATSKAEEAAFKRQLDQANERFDVGLSDKTDVLEAQASYDTARANRLIAEQRVDDAFQALVTL
TNRDYSAIEGMRHTLPVVPPAPNDAKAWVDTAVQQNLRLLASNYAVNAAEETLRQRKAGHLPTLDAVAQYQK
GDNDALGFANSAANPLVHYGKYVDERSIGLELNIPIYSGGLTSSQVRESYQRLNQSEQSREGQRRQVVQDTR
NLHRAVNTDVEQVQARRQAIISNQSSLEATEIGYQVGTRNIVDVLNAQRQLYAAVRDYNNSRYDYILDTLRL
KQAAGTLSPADLEALSAYLKQDYDPDKDFLPPDLAKAAAEQLQSKPRQQY*
AnnotationID:954GeneID:945
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 06:06:55
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane efflux protein precursor
Cell Localization:()
Synonyms:ompH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1538,pfam02321
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58405.1| (AE016874) outer membrane efflux protein TolC, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 479

 Score =  682 bits (1760), Expect = 0.0
 Identities = 354/482 (73%), Positives = 417/482 (86%), Gaps = 4/482 (0%)

>gb|AAN70490.1|AE016690_6 (AE016792) outer membrane efflux protein [Pseudomonas putida
           KT2440]
          Length = 477

 Score =  676 bits (1743), Expect = 0.0
 Identities = 350/479 (73%), Positives = 409/479 (85%), Gaps = 3/479 (0%)








 
Structural Features:
COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / 
Intracellular trafficking and secretion]
CD-Length = 457 residues,  95.6% aligned
Score =  183 bits (466), Expect = 3e-47
Identities = 130/447 (29%), Positives = 202/447 (45%), Gaps = 13/447 (2%)

pfam02321, OEP, Outer membrane efflux protein.
CD-Length = 188 residues,  99.5% aligned
Score = 82.4 bits (203), Expect = 1e-16
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 1/188 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1893




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19035




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35094




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:945_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:945
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1676
                           PA4974_tr
                           translation of PA4974
                           482
                           99.99
                           99.99
                           0
                           2412.0
     

     
     
60005
                           gb|AAG08359.1|AE004910_6
                           (AE004910) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           482
                           99.99
                           99.99
                           0
                           2412.0
     

     
     
60006
                           dbj|BAC24099.1|
                           (AB085584) outer membrane efflux protein [Pseudomonas aeruginosa]
                           482
                           99.99
                           99.99
                           0
                           2412.0
     

     
     
60007
                           gb|AAO58405.1|
                           (AE016874) outer membrane efflux protein TolC, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           486
                           73.04
                           85.80
                           11
                           1769.0
     

     
     
60008
                           gb|AAN70490.1|AE016690_6
                           (AE016792) outer membrane efflux protein [Pseudomonas putida KT2440]
                           483
                           72.46
                           84.67
                           7
                           1749.0
     

     






      

          
GC ORFID: 43947How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4974Glimmer Score: 

          
Start: 5119179Stop: 5120627

          
Length: 1449


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4974 translation of PA4974Homolog Bit Score 933.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3673 (ORF: BLASTX 685.0), t_PA4974 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCGCAGACTCTCCCTGGCGGCCGCCGTGGCCGCTGCTACCGGTGTCGCCTGGGCCGCCCAGCCGACC 
CCGCTGCCGACCAAGACCGACCTGATCAGCGTCTACAAGGAAGCCGTCGACAACAACGCCGACCTCGCCGCC 
GCCCAGGCCGACTACCTGGCGCGCAAGGAAGTGGTGCCCCAGGCCCGCGCCGGCCTGCTGCCGCAACTCGGC 
GCCGGCGCCCGCGTCGGAGACACCCGGATCGCATTCGACGAGCGTCCGGCGACCGTCAAGCGCAACAGCCAG 
GTCGTCCAGGCCACCCTCAGCCAGCCGTTGTTCCGCGCCGACCGCTGGTTCCAGTGGCAGGCCGCCAAGGAA 
ACCAGCGACCAGGCCCGGCTGGAATTCTCCGCGACCCAGCAGGACCTGATCCTGCGCAGCGCCGAGACCTAC 
TTCACGGTGCTCCGCGCCCAGGACAACCTAGCCACCAGCAAGGCCGAGGAAGCCGCCTTCAAGCGCCAGCTG 
GACCAGGCAAACGAGCGCTTCGACGTGGGCCTTTCCGACAAGACCGACGTGCTCGAGGCCCAGGCCAGCTAC 
GACACAGCCCGCGCCAACCGGCTGATCGCCGAACAGCGCGTGGACGATGCCTTCCAGGCCCTGGTGACCCTG 
ACCAACCGCGATTACAGCGCCATCGAGGGCATGCGCCACACCCTGCCAGTGGTGCCGCCGGCGCCGAACGAC 
GCCAAGGCCTGGGTCGACACCGCGGTGCAGCAGAACCTGCGCCTGCTGGCCAGCAACTACGCGGTCAACGCC 
GCCGAGGAAACCCTCCGCCAGCGCAAGGCCGGGCACCTGCCGACCCTCGATGCCGTGGCCCAGTACCAGAAG 
GGCGACAACGACGCCCTCGGCTTCGCCAACAGCGCCGCCAATCCGCTGGTGCACTATGGCAAGTATGTCGAT 
GAGCGCAGCATTGGCCTGGAACTGAACATCCCGATCTACAGCGGCGGCCTGACCTCCTCCCAGGTCCGCGAG 
TCCTACCAGCGCCTCAACCAGAGCGAGCAGTCCCGCGAAGGCCAGCGCCGCCAGGTGGTGCAGGACACCCGC 
AACCTGCACCGCGCGGTGAATACCGACGTCGAGCAGGTCCAGGCGCGGCGCCAGGCGATCATCTCCAACCAG 
AGTTCGCTGGAAGCCACCGAGATCGGCTACCAGGTCGGCACCCGCAACATCGTCGACGTGCTCAACGCCCAG 
CGCCAGCTGTACGCCGCCGTGCGCGACTACAACAACAGCCGCTACGACTACATCCTCGATACCCTGCGCCTG 
AAGCAGGCGGCCGGCACCCTCAGCCCGGCCGACCTGGAGGCGCTCAGCGCCTACCTGAAGCAGGATTACGAT 
CCGGACAAGGACTTCCTCCCGCCGGACCTGGCCAAGGCCGCCGCCGAGCAGTTACAGAGCAAGCCGCGCCAG 
CAGTACTAG