ViewGene
Locus Name:
GeneID:
Location:

GeneID:944
TrivialName: PA14_54040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54040
PAO1 Ortholog Locus:PA0789
Sequence Length:1416
Protein Length:471
Start: 4793292
Stop: 4791877
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04178.1|AE004514_1 (AE004514) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 470/471 (99%), Positives = 471/471 (100%)
Sequence:
ATGTCGTCTGTCGGCGAACAGAAGGTTCAAGACGGCTCCCTGAAGCGCGAGCTCGGTGAGCGACACATCCGC
CTGATGGCGCTCGGCGCCTGTATCGGCGTCGGCCTGTTCCTGGGCTCGGCGAAGGCCATCCAGATGGCCGGC
CCGGCCATCATGATCTCCTACATCCTTGGCGGCCTGGCGATCCTGGTGATCATGCGCGCCCTCGGCGAGATG
GCGGTACACAATCCGGTGGCCGGTTCCTTCAGCCAGTACGCCAAGGATTACCTGGGCCCGCTGGCGGGCTTC
ATCACCGGCTGGAACTACTGGTTCCTCTGGCTGGTGACCTGTGTCGCCGAGATCACCGCCGTCGCCGTCTAC
ATGGGCATCTGGTTCCCCGACGTGCCGCGCTGGATCTGGGCCCTGGCGGCCCTGGCGAGCATGGGCACGATC
AACCTCATCGCGGTGCGTGCCTTCGGCGAGTTCGAGTTCTGGTTCGCCCTGATCAAGATCGTCACCATCCTG
GCGATGGTGGTGGTCGGCATCGGCATGATCGCCTTCGGCTTCGGCAACGACGGCATCGCCACCGGTATCTCC
AACCTCTGGGCCCACGGCGGCTTCATGCCCAATGGCATCCAGGGCGTGCTGATGTCGCTGCAGATGGTGATG
TTCGCCTACCTCGGGGTGGAAATGATCGGCCTCACCGCCGGCGAAGCGCGTAACCCGACCAAGACCATTCCC
AGCGCGATCAACTCGGTGTTCTGGCGCATCCTGCTGTTCTATGTCGGCTCGCTGTTCGTGATCATGTCGCTC
TATCCGTGGAACGAGATCGGCACCCAGGGCAGCCCCTTCGTGATGACCTTCGAGCGCATGGGCATCAAGACC
GCCGCCGGGATCATCAACTTCGTGGTGATCACCGCCGCGCTGTCGTCCTGCAACGGCGGCATCTTCAGCACC
GGGCGCATGCTCTACAGCCTGGCCCAGCATCGCCAGGCCCCGGCCTTCTTCGGCAAGGCCTCGCGCAGCGGC
GTACCGCGCCGGGCGCTGATCCTGTCGATCCTGGCGCTGCTGCTGGGCGTGTTGCTGAACTACCTGGTGCCG
GAGAAGGTGTTCGTCTGGGTGACCTCCATCGCCACCTTCGGCGCGATCTGGACCTGGGCGATGATCCTGCTG
GCCCAGTTGCGCTTCCGCAAGACGCTCAGCCCGGCCGAGTGCGACAAGCTGCAATACCGCATGTGGCTGTAC
CCGCTCAGTTCCTACCTGGCGCTGGCGTTCCTGGTGATGGTGGTGGTGCTGATGGCCTTCTTCGAGGACACC
CGCATCGCCCTCTACATCGGCCCGCCGTTCATCCTGCTGCTGACCGTCCTGTACTACGCCTTCAACCTGGCG
CCGAAGGAGCCTGCCGGCACCGGCTCGGTAAGCCGCGCGGCGTCCTGA
Translation:
MSSVGEQKVQDGSLKRELGERHIRLMALGACIGVGLFLGSAKAIQMAGPAIMISYILGGLAILVIMRALGEM
AVHNPVAGSFSQYAKDYLGPLAGFITGWNYWFLWLVTCVAEITAVAVYMGIWFPDVPRWIWALAALASMGTI
NLIAVRAFGEFEFWFALIKIVTILAMVVVGIGMIAFGFGNDGIATGISNLWAHGGFMPNGIQGVLMSLQMVM
FAYLGVEMIGLTAGEARNPTKTIPSAINSVFWRILLFYVGSLFVIMSLYPWNEIGTQGSPFVMTFERMGIKT
AAGIINFVVITAALSSCNGGIFSTGRMLYSLAQHRQAPAFFGKASRSGVPRRALILSILALLLGVLLNYLVP
EKVFVWVTSIATFGAIWTWAMILLAQLRFRKTLSPAECDKLQYRMWLYPLSSYLALAFLVMVVVLMAFFEDT
RIALYIGPPFILLLTVLYYAFNLAPKEPAGTGSVSRAAS*
AnnotationID:953GeneID:944
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 14:02:50
Gene Name:
Confidence Code:3
GeneProduct:probable amino acid permease
Cell Localization:(4) Inner membrane protein
Synonyms:PA0789
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1113, COG0833
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9946680|gb|AAG04178.1|  probable amino acid permease [Pseudomonas aeruginosa PAO1]
 gi|15595986|ref|NP_249480.1|  probable amino acid permease [Pseudomonas aeruginosa PAO1]
 gi|84322738|ref|ZP_00970821.1|  COG1113: Gamma-aminobutyrate permease and related permeases [Pseudomonas 
aeruginosa 2192]
 gi|84316701|ref|ZP_00965170.1|  COG1113: Gamma-aminobutyrate permease and related permeases [Pseudomonas 
aeruginosa C3719]
Length=471

 Score =  933 bits (2411),  Expect = 0.0
 Identities = 470/471 (99%), Positives = 471/471 (100%), Gaps = 0/471 (0%)






 
Structural Features:
COG1113, AnsP, Gamma-aminobutyrate permease and related permeases.  Score: 555, 1e-158
COG0833, LysP, Amino acid transporters.  Score: 387, 4e-108






   
Genomic Context:






   
Comment:


















    ReferenceID:1891




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19033




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:944
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1672
                           PA0789_tr
                           translation of PA0789
                           471
                           99.78
                           99.99
                           0
                           2411.0
     

     
     
59838
                           gb|AAG04178.1|AE004514_1
                           (AE004514) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           471
                           99.78
                           99.99
                           0
                           2411.0
     

     
     
59839
                           gb|AAN66684.1|AE016296_4
                           (AE016778) amino acid permease [Pseudomonas putida KT2440]
                           475
                           81.68
                           89.89
                           7
                           2039.0
     

     
     
59840
                           gb|AAQ58813.1|
                           (AE016913) proline-specific permease [Chromobacterium violaceum ATCC 12472]
                           480
                           66.87
                           80.00
                           26
                           1709.0
     

     
     
59844
                           gb|AAC00244.1|
                           (AF008220) amino acid transporter [Bacillus subtilis]
                           476
                           62.81
                           79.62
                           18
                           1624.0
     

     






      

          
GC ORFID: 43946How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0789Glimmer Score: 

          
Start: 160615Stop: 162030

          
Length: 1416


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0789 translation of PA0789Homolog Bit Score 933.0

          
Other Homologs:  t_PA5097 (ORF: BLASTX 503.0), psyr_15may02_Scaffold6_revised_gene6904 (ORF: BLASTX 498.0), t_PA3000 (ORF: BLASTX 403.0), t_PA0866 (ORF: BLASTX 391.0), psyr_15may02_Scaffold8_revised_gene7800 (ORF: BLASTX 388.0), t_PA0789 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTCTGTCGGCGAACAGAAGGTTCAAGACGGCTCCCTGAAGCGCGAGCTCGGTGAGCGACACATCCGC 
CTGATGGCGCTCGGCGCCTGTATCGGCGTCGGCCTGTTCCTGGGCTCGGCGAAGGCCATCCAGATGGCCGGC 
CCGGCCATCATGATCTCCTACATCCTTGGCGGCCTGGCGATCCTGGTGATCATGCGCGCCCTCGGCGAGATG 
GCGGTACACAATCCGGTGGCCGGTTCCTTCAGCCAGTACGCCAAGGATTACCTGGGCCCGCTGGCGGGCTTC 
ATCACCGGCTGGAACTACTGGTTCCTCTGGCTGGTGACCTGTGTCGCCGAGATCACCGCCGTCGCCGTCTAC 
ATGGGCATCTGGTTCCCCGACGTGCCGCGCTGGATCTGGGCCCTGGCGGCCCTGGCGAGCATGGGCACGATC 
AACCTCATCGCGGTGCGTGCCTTCGGCGAGTTCGAGTTCTGGTTCGCCCTGATCAAGATCGTCACCATCCTG 
GCGATGGTGGTGGTCGGCATCGGCATGATCGCCTTCGGCTTCGGCAACGACGGCATCGCCACCGGTATCTCC 
AACCTCTGGGCCCACGGCGGCTTCATGCCCAATGGCATCCAGGGCGTGCTGATGTCGCTGCAGATGGTGATG 
TTCGCCTACCTCGGGGTGGAAATGATCGGCCTCACCGCCGGCGAAGCGCGTAACCCGACCAAGACCATTCCC 
AGCGCGATCAACTCGGTGTTCTGGCGCATCCTGCTGTTCTATGTCGGCTCGCTGTTCGTGATCATGTCGCTC 
TATCCGTGGAACGAGATCGGCACCCAGGGCAGCCCCTTCGTGATGACCTTCGAGCGCATGGGCATCAAGACC 
GCCGCCGGGATCATCAACTTCGTGGTGATCACCGCCGCGCTGTCGTCCTGCAACGGCGGCATCTTCAGCACC 
GGGCGCATGCTCTACAGCCTGGCCCAGCATCGCCAGGCCCCGGCCTTCTTCGGCAAGGCCTCGCGCAGCGGC 
GTACCGCGCCGGGCGCTGATCCTGTCGATCCTGGCGCTGCTGCTGGGCGTGTTGCTGAACTACCTGGTGCCG 
GAGAAGGTGTTCGTCTGGGTGACCTCCATCGCCACCTTCGGCGCGATCTGGACCTGGGCGATGATCCTGCTG 
GCCCAGTTGCGCTTCCGCAAGACGCTCAGCCCGGCCGAGTGCGACAAGCTGCAATACCGCATGTGGCTGTAC 
CCGCTCAGTTCCTACCTGGCGCTGGCGTTCCTGGTGATGGTGGTGGTGCTGATGGCCTTCTTCGAGGACACC 
CGCATCGCCCTCTACATCGGCCCGCCGTTCATCCTGCTGCTGACCGTCCTGTACTACGCCTTCAACCTGGCG 
CCGAAGGAGCCTGCCGGCACCGGCTCGGTAAGCCGCGCGGCGTCCTGA