ViewGene

Locus Name:
GeneID:
Location:

GeneID:942
TrivialName: PA14_03900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03900
PAO1 Ortholog Locus:PA0299
Sequence Length:1371
Protein Length:456
Start: 351076
Stop: 352446
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03688.1|AE004467_10 (AE004467) putrescine aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 456/456 (100%), Positives = 456/456 (100%)
Sequence:
ATGAACAGCCAAATCACCAACGCCAAGACCCGTGAGTGGCAGGCGTTGAGCCGCGACCACCATCTGCCGCCG
TTCACCGACTACAAGCAGTTGAACGAGAAGGGCGCGCGGATCATCACCAAGGCCGAAGGCGTCTATATCTGG
GACAGCGAGGGCAACAAGATCCTCGATGCGATGGCCGGCCTCTGGTGCGTCAACGTCGGCTACGGCCGCGAG
GAGCTGGTCCAGGCCGCCACCCGGCAGATGCGCGAGTTGCCGTTCTACAACCTGTTCTTCCAGACCGCCCAC
CCGCCGGTGGTCGAGCTGGCCAAGGCGATCGCCGACGTCGCTCCGGAAGGCATGAACCACGTGTTCTTCACC
GGCTCCGGCTCCGAGGCCAACGACACCGTGCTGCGTATGGTCCGCCACTATTGGGCGACCAAGGGCCAGCCG
CAGAAGAAAGTGGTGATCGGCCGCTGGAACGGCTACCACGGCTCCACCGTCGCCGGCGTCAGCCTGGGCGGC
ATGAAGGCGTTGCATGAGCAGGGTGATTTCCCCATCCCGGGCATCGTCCACATCGCCCAGCCCTACTGGTAC
GGCGAGGGCGGCGACATGTCGCCGGACGAATTCGGCGTCTGGGCCGCCGAGCAGCTGGAGAAGAAGATTCTC
GAAGTGGGCGAGGAAAACGTCGCCGCCTTCATCGCCGAGCCGATCCAGGGCGCCGGCGGCGTGATCGTCCCG
CCGGACACCTACTGGCCGAAGATCCGCGAGATCCTCGCCAAGTACGACATCCTGTTCATCGCCGACGAAGTG
ATCTGCGGCTTCGGCCGTACCGGCGAGTGGTTCGGCAGCCAGTACTACGGCAACGCCCCGGACCTGATGCCG
ATCGCCAAGGGCCTCACCTCCGGCTACATCCCCATGGGCGGGGTGGTGGTGCGCGACGAGATCGTCGAAGTG
CTCAACCAGGGCGGCGAGTTCTACCACGGCTTCACCTATTCCGGTCACCCGGTGGCGGCCGCCGTGGCCCTG
GAGAACATCCGCATCCTGCGCGAAGAGAAGATCATCGAGAAGGTGAAGGCGGAAACGGCACCGTATTTGCAG
AAACGCTGGCAGGAGCTGGCCGACCACCCGTTGGTGGGCGAAGCGCGCGGGGTCGGCATGGTCGCCGCCCTG
GAGctGGTCAAGAACAAGAAGACCCGCGAGCGTTTCACCGACAAGGGCGTCGGGATGCTGTGCCGGGAACAT
TGTTTCCGCAACGGTTTGATCATGCGCGCGGTGGGCGACACTATGATTATCTCGCCGCCGCTGGTGATCGAT
CCGTCGCAGATCGATGAGTTGATCACCCTGGCGCGCAAGTGCCTCGATCAGACCGCCGCCGCCGTCcTGGCT
TGA
Translation:
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGRE
ELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQP
QKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKIL
EVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMP
IAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQ
KRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVID
PSQIDELITLARKCLDQTAAAVLA*
AnnotationID:951GeneID:942
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 07:07:14
Gene Name:spuC
Confidence Code:1
GeneProduct:putrescine aminotransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:aminotransferase, class III
Functional Category Confidence Code:5
COGs:COG0161,pfam00202
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58734.1| (AE016875) aminotransferase, class III [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 455

 Score =  751 bits (1940), Expect = 0.0
 Identities = 351/448 (78%), Positives = 401/448 (89%)

>gb|AAN70747.1|AE016718_6 (AE016793) aminotransferase, class III [Pseudomonas putida KT2440]
          Length = 453

 Score =  744 bits (1920), Expect = 0.0
 Identities = 346/450 (76%), Positives = 394/450 (87%)

Structural Features:
COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 
[Coenzyme metabolism]
CD-Length = 449 residues,  99.3% aligned
Score =  564 bits (1456), Expect = 6e-162
Identities = 209/450 (46%), Positives = 283/450 (62%), Gaps = 10/450 (2%)

pfam00202, Aminotran_3, Aminotransferase class-III.
CD-Length = 402 residues,  98.0% aligned
Score =  334 bits (858), Expect = 1e-92
Identities = 140/415 (33%), Positives = 224/415 (53%), Gaps = 23/415 (5%)
Genomic Context:
Comment:
ReferenceID:1887
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19029
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35431
Author/Investigator(s): Lu CD, Itoh Y, Nakada Y, Jiang Y.
Title: Functional analysis and regulation of the divergent spuABCDEFGH-spuI operons for polyamine uptake and utilization in Pseudomonas aeruginosa PAO1.
PubMed: 12081945
MedLine:
Source:
J Bacteriol. 2002 Jul;184(14):3765-73.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12081945
ReferenceID:38071
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:942_cdd.html
URL:
Homologs By Global Alignment
Gene ID:942

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1668 PA0299_tr translation of PA0299 456 99.99 99.99 0 2414.0
59731 gb|AAG03688.1|AE004467_10 (AE004467) putrescine aminotransferase [Pseudomonas aeruginosa PAO1] 456 99.99 99.99 0 2414.0
59732 gb|AAO58734.1| (AE016875) aminotransferase, class III [Pseudomonas syringae pv. tomato str. DC3000] 456 77.19 88.37 1 1937.0
59733 gb|AAK15486.1|AF323694_1 (AF323694) BioA [Pseudomonas fluorescens] 458 77.07 88.42 7 1926.0
59734 gb|AAN70747.1|AE016718_6 (AE016793) aminotransferase, class III [Pseudomonas putida KT2440] 456 75.87 86.40 3 1917.0
GC ORFID: 43944How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0299Glimmer Score:
Start: 6152418Stop: 6153788
Length: 1371
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0299 translation of PA0299Homolog Bit Score 934.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6510 (ORF: BLASTX 757.0), t_PA0221 (ORF: BLASTX 506.0), t_PA0299 (ORF: GLIMMER)
GC ORF Sequence
ATGAACAGCCAAATCACCAACGCCAAGACCCGTGAGTGGCAGGCGTTGAGCCGCGACCACCATCTGCCGCCG
TTCACCGACTACAAGCAGTTGAACGAGAAGGGCGCGCGGATCATCACCAAGGCCGAAGGCGTCTATATCTGG
GACAGCGAGGGCAACAAGATCCTCGATGCGATGGCCGGCCTCTGGTGCGTCAACGTCGGCTACGGCCGCGAG
GAGCTGGTCCAGGCCGCCACCCGGCAGATGCGCGAGTTGCCGTTCTACAACCTGTTCTTCCAGACCGCCCAC
CCGCCGGTGGTCGAGCTGGCCAAGGCGATCGCCGACGTCGCTCCGGAAGGCATGAACCACGTGTTCTTCACC
GGCTCCGGCTCCGAGGCCAACGACACCGTGCTGCGTATGGTCCGCCACTATTGGGCGACCAAGGGCCAGCCG
CAGAAGAAAGTGGTGATCGGCCGCTGGAACGGCTACCACGGCTCCACCGTCGCCGGCGTCAGCCTGGGCGGC
ATGAAGGCGTTGCATGAGCAGGGTGATTTCCCCATCCCGGGCATCGTCCACATCGCCCAGCCCTACTGGTAC
GGCGAGGGCGGCGACATGTCGCCGGACGAATTCGGCGTCTGGGCCGCCGAGCAGCTGGAGAAGAAGATTCTC
GAAGTGGGCGAGGAAAACGTCGCCGCCTTCATCGCCGAGCCGATCCAGGGCGCCGGCGGCGTGATCGTCCCG
CCGGACACCTACTGGCCGAAGATCCGCGAGATCCTCGCCAAGTACGACATCCTGTTCATCGCCGACGAAGTG
ATCTGCGGCTTCGGCCGTACCGGCGAGTGGTTCGGCAGCCAGTACTACGGCAACGCCCCGGACCTGATGCCG
ATCGCCAAGGGCCTCACCTCCGGCTACATCCCCATGGGCGGGGTGGTGGTGCGCGACGAGATCGTCGAAGTG
CTCAACCAGGGCGGCGAGTTCTACCACGGCTTCACCTATTCCGGTCACCCGGTGGCGGCCGCCGTGGCCCTG
GAGAACATCCGCATCCTGCGCGAAGAGAAGATCATCGAGAAGGTGAAGGCGGAAACGGCACCGTATTTGCAG
AAACGCTGGCAGGAGCTGGCCGACCACCCGTTGGTGGGCGAAGCGCGCGGGGTCGGCATGGTCGCCGCCCTG
GAGctGGTCAAGAACAAGAAGACCCGCGAGCGTTTCACCGACAAGGGCGTCGGGATGCTGTGCCGGGAACAT
TGTTTCCGCAACGGTTTGATCATGCGCGCGGTGGGCGACACTATGATTATCTCGCCGCCGCTGGTGATCGAT
CCGTCGCAGATCGATGAGTTGATCACCCTGGCGCGCAAGTGCCTCGATCAGACCGCCGCCGCCGTCcTGGCT
TGA