ViewGene
Locus Name:
GeneID:
Location:

GeneID:941
TrivialName: PA14_71740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71740
PAO1 Ortholog Locus:PA5436
Sequence Length:1416
Protein Length:471
Start: 6392670
Stop: 6391255
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08821.1|AE004956_5 (AE004956) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 471/471 (100%), Positives = 471/471 (100%)
Sequence:
GTGATCAAGAAGATCCTGATCGCCAACCGCGGCGAGATCGCCGTCCGCATCGTGCGCGCCTGCGCCGAGATG
GGCATCCGCTCGGTGGCCGTCTACTCCGAGGCCGATCGCCACGCGCTGCACGTCAAGCGCGCCGACGAAGCC
CACAGCATCGGCGCGGACCCGCTGGCCGGCTACCTCAACCCGCGCGCCCTGGTGAACCTGGCGGTGGAAAGC
GGCTGCGACGCCCTGCACCCCGGCTATGGCTTCCTCTCGGAAAATGCCGAGCTGGCGGAAATCTGCGCCGAG
CGCGGTATCAAGTTCATCGGCCCGTCGGCGCAAGTGATCCGCCGCATGGGCGACAAGACCGAAGCCCGCCGC
AGCATGATCGCCGCCGGCGTGCCCTGCACCCCCGGCACCGAAGGCAACGTCGCCGATCTCGCCGAGGCCCTG
CGCGAAGCCGAGCGGATCGGCTACCCGGTGATGCTCAAGGCCACCTCCGGCGGCGGCGGCCGTGGCATCCGT
CGCTGCAACAGCCGCGAGGAGCTGGAACAGGCGTTCCCGCGGGTGATCTCCGAGGCGACCAAGGCCTTCGGC
AGCGCCGAAGTATTCCTCGAGAAGTGCATCGTCAATCCCAAGCACATCGAGGCGCAGATCCTCGCCGATTCC
TTCGGCAACACCGTGCACCTGTTCGAGCGCGACTGCTCGATCCAGCGCCGCAACCAGAAGCTCATCGAGATC
GCCCCGAGCCCGCAGCTCACCCCCGAGCAGCGCGCCTACATCGGCGATCTGGCGGTGCGCGCGGCCAAGGCG
GTGGGCTACGAGAACGCCGGCACCGTGGAGTTCCTGCTCGCCGACGGCGAGGTGTACTTCATGGAGATGAAC
ACCCGGGTCCAGGTGGAGCACACCATCACCGAGGAAATCACCGGCATCGACGTGGTCCGCGAGCAGATCCGC
ATCGCTTCCGGGCTGGAGCTGTCGGTCAAGCAGGACGACATCGTCCATCGCGGCTACGCCCTGCAGTTCCGC
ATCAACGCCGAGGACCCGAAGAACAACTTCCTGCCCTCGTTCGGCAAGATCACCCGCTACTACGCCCCCGGC
GGCCCCGGCGTGCGTACCGACACGGCGATCTACACCGGCTACACCATCCCGCCGTACTACGACTCGATGTGC
CTGAAGCTGATCGTCTGGGCGCTGACCTGGGAAGAGGCCCTCGATCGCGGCCTGCGCGCCCTTGACGACATG
CGCGTGCAAGGGGTCAAGACCACCGCGCCGTACTACCAGGAAATCCTCCGCAACCCGGAATTCCGCAGCGGC
CAGTTCAACACCAGCTTCGTCGAAAGCCACCCGGAACTGACCCAGTACTCGATCAAGCGCAACCCGTCGCAC
CTGGCCATCGCCATCGCCACCGCCATCGCGGCCCACGCCGGCCTGTAA
Translation:
MIKKILIANRGEIAVRIVRACAEMGIRSVAVYSEADRHALHVKRADEAHSIGADPLAGYLNPRALVNLAVES
GCDALHPGYGFLSENAELAEICAERGIKFIGPSAQVIRRMGDKTEARRSMIAAGVPCTPGTEGNVADLAEAL
REAERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAEVFLEKCIVNPKHIEAQILADS
FGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLADGEVYFMEMN
TRVQVEHTITEEITGIDVVREQIRIASGLELSVKQDDIVHRGYALQFRINAEDPKNNFLPSFGKITRYYAPG
GPGVRTDTAIYTGYTIPPYYDSMCLKLIVWALTWEEALDRGLRALDDMRVQGVKTTAPYYQEILRNPEFRSG
QFNTSFVESHPELTQYSIKRNPSHLAIAIATAIAAHAGL*
AnnotationID:950GeneID:941
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:46
Gene Name:
Confidence Code:3
GeneProduct:putative biotin carboxylase subunit of a transcarboxylase
Cell Localization:()
Synonyms:accC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative acetyl-CoA carboxylase, biotin carboxylase
Functional Category Confidence Code:5
COGs:COG0439,pfam02785,pfam00289
Secondary Functional Category(ies):lipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70912.1|AE016735_5 (AE016794) acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas
           putida KT2440]
          Length = 471

 Score =  879 bits (2271), Expect = 0.0
 Identities = 438/471 (92%), Positives = 453/471 (96%)

>gb|AAO58930.1| (AE016876) acetyl-CoA carboxylase, biotin carboxylase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 471

 Score =  870 bits (2247), Expect = 0.0
 Identities = 432/471 (91%), Positives = 453/471 (96%)

>dbj|BAB42619.1| (AP003134) acetyl-CoA carboxylase accC [Staphylococcus aureus
           subsp. aureus N315]
          Length = 451

 Score =  486 bits (1250), Expect = e-136
 Identities = 244/444 (54%), Positives = 328/444 (73%), Gaps = 3/444 (0%)








 
Structural Features:
COG0439, AccC, Biotin carboxylase [Lipid metabolism]
CD-Length = 449 residues,  99.3% aligned
Score =  593 bits (1531), Expect = 1e-170
Identities = 278/446 (62%), Positives = 333/446 (74%), Gaps = 2/446 (0%)

pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain.
CD-Length = 107 residues, 100.0% aligned
Score =  154 bits (391), Expect = 2e-38
Identities = 58/107 (54%), Positives = 72/107 (67%)

pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain, N-terminal domain.
CD-Length = 118 residues, 100.0% aligned
Score =  107 bits (269), Expect = 2e-24
Identities = 53/118 (44%), Positives = 65/118 (55%), Gaps = 6/118 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14263




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19027




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34676




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:941_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:941
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1662
                           PA5436_tr
                           translation of PA5436
                           471
                           99.99
                           99.99
                           0
                           2415.0
     

     
     
59436
                           gb|AAG08821.1|AE004956_5
                           (AE004956) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa PAO1]
                           471
                           99.78
                           99.99
                           0
                           2412.0
     

     
     
59437
                           gb|AAN70912.1|AE016735_5
                           (AE016794) acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida KT2440]
                           471
                           92.78
                           96.17
                           0
                           2267.0
     

     
     
59438
                           gb|AAO58930.1|
                           (AE016876) acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           471
                           91.50
                           96.17
                           0
                           2243.0
     

     
     
59440
                           gb|AAC07413.1|
                           (AE000742) biotin carboxylase [Aquifex aeolicus VF5]
                           477
                           55.97
                           70.64
                           6
                           1369.0
     

     






      

          
GC ORFID: 43943How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5436Glimmer Score: 

          
Start: 5656359Stop: 5654944

          
Length: 1416


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5436 translation of PA5436Homolog Bit Score 934.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4180 (ORF: BLASTX 877.0), t_PA0494 (ORF: BLASTX 412.0), t_PA5436 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCAAGAAGATCCTGATCGCCAACCGCGGCGAGATCGCCGTCCGCATCGTGCGCGCCTGCGCCGAGATG 
GGCATCCGCTCGGTGGCCGTCTACTCCGAGGCCGATCGCCACGCGCTGCACGTCAAGCGCGCCGACGAAGCC 
CACAGCATCGGCGCGGACCCGCTGGCCGGCTACCTCAACCCGCGCGCCCTGGTGAACCTGGCGGTGGAAAGC 
GGCTGCGACGCCCTGCACCCCGGCTATGGCTTCCTCTCGGAAAATGCCGAGCTGGCGGAAATCTGCGCCGAG 
CGCGGTATCAAGTTCATCGGCCCGTCGGCGCAAGTGATCCGCCGCATGGGCGACAAGACCGAAGCCCGCCGC 
AGCATGATCGCCGCCGGCGTGCCCTGCACCCCCGGCACCGAAGGCAACGTCGCCGATCTCGCCGAGGCCCTG 
CGCGAAGCCGAGCGGATCGGCTACCCGGTGATGCTCAAGGCCACCTCCGGCGGCGGCGGCCGTGGCATCCGT 
CGCTGCAACAGCCGCGAGGAGCTGGAACAGGCGTTCCCGCGGGTGATCTCCGAGGCGACCAAGGCCTTCGGC 
AGCGCCGAAGTATTCCTCGAGAAGTGCATCGTCAATCCCAAGCACATCGAGGCGCAGATCCTCGCCGATTCC 
TTCGGCAACACCGTGCACCTGTTCGAGCGCGACTGCTCGATCCAGCGCCGCAACCAGAAGCTCATCGAGATC 
GCCCCGAGCCCGCAGCTCACCCCCGAGCAGCGCGCCTACATCGGCGATCTGGCGGTGCGCGCGGCCAAGGCG 
GTGGGCTACGAGAACGCCGGCACCGTGGAGTTCCTGCTCGCCGACGGCGAGGTGTACTTCATGGAGATGAAC 
ACCCGGGTCCAGGTGGAGCACACCATCACCGAGGAAATCACCGGCATCGACGTGGTCCGCGAGCAGATCCGC 
ATCGCTTCCGGGCTGGAGCTGTCGGTCAAGCAGGACGACATCGTCCATCGCGGCTACGCCCTGCAGTTCCGC 
ATCAACGCCGAGGACCCGAAGAACAACTTCCTGCCCTCGTTCGGCAAGATCACCCGCTACTACGCCCCCGGC 
GGCCCCGGCGTGCGTACCGACACGGCGATCTACACCGGCTACACCATCCCGCCGTACTACGACTCGATGTGC 
CTGAAGCTGATCGTCTGGGCGCTGACCTGGGAAGAGGCCCTCGATCGCGGCCTGCGCGCCCTTGACGACATG 
CGCGTGCAAGGGGTCAAGACCACCGCGCCGTACTACCAGGAAATCCTCCGCAACCCGGAATTCCGCAGCGGC 
CAGTTCAACACCAGCTTCGTCGAAAGCCACCCGGAACTGACCCAGTACTCGATCAAGCGCAACCCGTCGCAC 
CTGGCCATCGCCATCGCCACCGCCATCGCGGCCCACGCCGGCCTGTAA