ViewGene
Locus Name:
GeneID:
Location:

GeneID:940
TrivialName: PA14_17570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17570
PAO1 Ortholog Locus:PA3614
Sequence Length:1404
Protein Length:467
Start: 1509490
Stop: 1508087
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07002.1|AE004781_10 (AE004781) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 462/467 (98%), Positives = 465/467 (99%)
Sequence:
ATGGCATCACTGACGTTTCTAGGCGCCGCCCAGGAGGTCACTGGCTCCTGTTATCTGCTGGAAACCCTCGAT
GGCGTGAAGGTCCTGCTCGAATGCGGCATGCGCCAGGGGCGCCGCGAAGCCGACAACGGCAACCGCGCGCCC
TTCCCCTTCGATCCCGCGAGCATCGACGCGGTGGTCATCTCCCACGCCCACCTGGACCACAGCGGTCTGCTG
CCGCGCCTGGCGGCCGAGGGCTTCAAGGGCCCGATCTTCGCCACCGAGGCCACCTGCGAACTGCTCGAACTC
ATGCTGCTGGACTCCGCACACATCCAGGAAAAGGACGCCGAGTGGGAGAACCGCTGGCGCAACCGGATCGGC
AAGCCGAGCATCAAGCCGCTGTATACCCAGGCCGACACCGAACGCGCGCTCAAGCTGCGCCGGCCGATCAGC
CTCGGCAGCACGGTGGCGGTCGCTCGTGGCGTGCGGGTGACCTTTCACAACGCCGGCCACATCCTCGGCTCG
TCGATCGTCGAAGTGCAGTTCCACGACCAGGTGCAACCGCGCCGCCTGGTGTTTTCCGGCGACCTCGGCAAC
ACCTGCTCGCCGTTGATGCGCGCGCCCTCGCCGCTGAGCCGGGCCGACGTGGTGATGCTCGAGTCCACCTAC
GGCGATCGCGATCACCGCGACAGCAACGAAACCCTGGAGGAACTGGCGGCGATCCTCGAACAGGCGCATCGC
GACGGCGGCAACGTGCTGATCCCGTCGTTCGCCGTCGGCCGCACCCAGGACCTGCTCTACTACCTCGGCCGC
TTCTACCAGGAGGGCCGCCTGCCGCAACAGGCGGTGTTCCTCGACAGCCCGATGGCCGCCCGCGCCAACGGC
ATCTACCTGCGCCACAGCAACGAGTTCGACGACCGCGACCGCGAGTACATTCGCGGCACCGGCACCACCCGC
CTGGAGGAATGGCTGCCGGTCCTTCGCGTCACCCGCAGCGCCGACGAGTCGATGGCGATCAACCGGATCAAG
AGCGGCGCGGTCATCATCGCCGGCAGCGGCATGTGCACCGGTGGCCGTATCGTCCATCACTTCAAGCACAAC
CTCTGGCGCCCGGAATGCCATGTGGTATTCCCCGGCTTCCAGGCGCGCGGCACCCTGGGCCGCAACATCGTC
GACGGCGCCAGCGCGGTTCGCGTGTTCCACCAGCGCATCGCGGTCAAGGCGCAAATCCATACCCTCGGCGGC
TTCTCCGCCCACGCCGGGCAATCGCAGTTGCTCGACTGGGTCGCTCACTTCGCCCACCGTCCCGCGCTATAC
CTGATACATGGCGAGCGGGAAAAGATGGAAGCGTTGCGGGGCGCGATCCGCGAGCGCCTCGACTGGGATGCC
GAGATACCCGAGCCCGGCGAACGCATCGAGATCTGA
Translation:
MASLTFLGAAQEVTGSCYLLETLDGVKVLLECGMRQGRREADNGNRAPFPFDPASIDAVVISHAHLDHSGLL
PRLAAEGFKGPIFATEATCELLELMLLDSAHIQEKDAEWENRWRNRIGKPSIKPLYTQADTERALKLRRPIS
LGSTVAVARGVRVTFHNAGHILGSSIVEVQFHDQVQPRRLVFSGDLGNTCSPLMRAPSPLSRADVVMLESTY
GDRDHRDSNETLEELAAILEQAHRDGGNVLIPSFAVGRTQDLLYYLGRFYQEGRLPQQAVFLDSPMAARANG
IYLRHSNEFDDRDREYIRGTGTTRLEEWLPVLRVTRSADESMAINRIKSGAVIIAGSGMCTGGRIVHHFKHN
LWRPECHVVFPGFQARGTLGRNIVDGASAVRVFHQRIAVKAQIHTLGGFSAHAGQSQLLDWVAHFAHRPALY
LIHGEREKMEALRGAIRERLDWDAEIPEPGERIEI*
AnnotationID:949GeneID:940
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 18:06:07
Gene Name:
Confidence Code:3
GeneProduct:putative metallo-beta-lactamase superfamily protein
Cell Localization:()
Synonyms:PA3614
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1236,KOG1136,
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM71840.1| (AE012833) metallo-beta-lactamase superfamily protein [Chlorobium
           tepidum TLS]
          Length = 469

 Score =  420 bits (1080), Expect = e-117
 Identities = 216/466 (46%), Positives = 300/466 (64%), Gaps = 12/466 (2%)

>emb|CAD83936.1| (BX321856) Metallo-beta-lactamase superfamily [Nitrosomonas
           europaea ATCC 19718]
          Length = 468

 Score =  395 bits (1015), Expect = e-109
 Identities = 209/462 (45%), Positives = 293/462 (63%), Gaps = 9/462 (1%)

>gb|AAO35566.1| (AE015939) cleavage and polyadenylation specificity factor
           [Clostridium tetani E88]
          Length = 506

 Score =  375 bits (962), Expect = e-103
 Identities = 192/437 (43%), Positives = 285/437 (65%), Gaps = 6/437 (1%)






 
Structural Features:
COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing 
[Translation, ribosomal structure and biogenesis]
CD-Length = 427 residues,  99.8% aligned
Score =  357 bits (917), Expect = 3e-99
Identities = 164/467 (35%), Positives = 237/467 (50%), Gaps = 43/467 (9%)

KOG1136, Predicted cleavage and polyadenylation specificity factor (CPSF subunit) 
[RNA processing and modification]
CD-Length = 501 residues,  87.8% aligned
Score =  182 bits (464), Expect = 1e-46
Identities = 128/476 (26%), Positives = 219/476 (46%), Gaps = 48/476 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1883




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19025




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31928




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:940_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:940
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1661
                           PA3614_tr
                           translation of PA3614
                           467
                           98.92
                           99.57
                           0
                           2415.0
     

     
     
59420
                           gb|AAG07002.1|AE004781_10
                           (AE004781) hypothetical protein PA3614 [Pseudomonas aeruginosa PAO1]
                           467
                           98.92
                           99.57
                           0
                           2415.0
     

     
     
59421
                           gb|AAM71840.1|
                           (AE012833) metallo-beta-lactamase superfamily protein [Chlorobium tepidum TLS]
                           483
                           44.92
                           62.31
                           30
                           1091.0
     

     
     
59423
                           emb|CAD83936.1|
                           (BX321856) Metallo-beta-lactamase superfamily [Nitrosomonas europaea ATCC 19718]
                           484
                           44.62
                           62.19
                           33
                           1032.0
     

     
     
59426
                           gb|AAN68898.1|AE016521_7
                           (AE016786) metallo-beta-lactamase family protein [Pseudomonas putida KT2440]
                           475
                           40.63
                           58.31
                           28
                           895.0
     

     






      

          
GC ORFID: 43942How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3614Glimmer Score: 

          
Start: 3444447Stop: 3445850

          
Length: 1404


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3614 translation of PA3614Homolog Bit Score 934.0

          
Other Homologs:  t_PA3614 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCATCACTGACGTTTCTAGGCGCCGCCCAGGAGGTCACTGGCTCCTGTTATCTGCTGGAAACCCTCGAT 
GGCGTGAAGGTCCTGCTCGAATGCGGCATGCGCCAGGGGCGCCGCGAAGCCGACAACGGCAACCGCGCGCCC 
TTCCCCTTCGATCCCGCGAGCATCGACGCGGTGGTCATCTCCCACGCCCACCTGGACCACAGCGGTCTGCTG 
CCGCGCCTGGCGGCCGAGGGCTTCAAGGGCCCGATCTTCGCCACCGAGGCCACCTGCGAACTGCTCGAACTC 
ATGCTGCTGGACTCCGCACACATCCAGGAAAAGGACGCCGAGTGGGAGAACCGCTGGCGCAACCGGATCGGC 
AAGCCGAGCATCAAGCCGCTGTATACCCAGGCCGACACCGAACGCGCGCTCAAGCTGCGCCGGCCGATCAGC 
CTCGGCAGCACGGTGGCGGTCGCTCGTGGCGTGCGGGTGACCTTTCACAACGCCGGCCACATCCTCGGCTCG 
TCGATCGTCGAAGTGCAGTTCCACGACCAGGTGCAACCGCGCCGCCTGGTGTTTTCCGGCGACCTCGGCAAC 
ACCTGCTCGCCGTTGATGCGCGCGCCCTCGCCGCTGAGCCGGGCCGACGTGGTGATGCTCGAGTCCACCTAC 
GGCGATCGCGATCACCGCGACAGCAACGAAACCCTGGAGGAACTGGCGGCGATCCTCGAACAGGCGCATCGC 
GACGGCGGCAACGTGCTGATCCCGTCGTTCGCCGTCGGCCGCACCCAGGACCTGCTCTACTACCTCGGCCGC 
TTCTACCAGGAGGGCCGCCTGCCGCAACAGGCGGTGTTCCTCGACAGCCCGATGGCCGCCCGCGCCAACGGC 
ATCTACCTGCGCCACAGCAACGAGTTCGACGACCGCGACCGCGAGTACATTCGCGGCACCGGCACCACCCGC 
CTGGAGGAATGGCTGCCGGTCCTTCGCGTCACCCGCAGCGCCGACGAGTCGATGGCGATCAACCGGATCAAG 
AGCGGCGCGGTCATCATCGCCGGCAGCGGCATGTGCACCGGTGGCCGTATCGTCCATCACTTCAAGCACAAC 
CTCTGGCGCCCGGAATGCCATGTGGTATTCCCCGGCTTCCAGGCGCGCGGCACCCTGGGCCGCAACATCGTC 
GACGGCGCCAGCGCGGTTCGCGTGTTCCACCAGCGCATCGCGGTCAAGGCGCAAATCCATACCCTCGGCGGC 
TTCTCCGCCCACGCCGGGCAATCGCAGTTGCTCGACTGGGTCGCTCACTTCGCCCACCGTCCCGCGCTATAC 
CTGATACATGGCGAGCGGGAAAAGATGGAAGCGTTGCGGGGCGCGATCCGCGAGCGCCTCGACTGGGATGCC 
GAGATACCCGAGCCCGGCGAACGCATCGAGATCTGA