ViewGene

Locus Name:
GeneID:
Location:

GeneID:94
TrivialName: PA14_61990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61990
PAO1 Ortholog Locus:PA4686
Sequence Length:2847
Protein Length:948
Start: 5526671
Stop: 5529517
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08073.1|AE004882_4 (AE004882) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 946/948 (99%), Positives = 948/948 (100%)
Sequence:
ATGAGCCAGACCCGCTACGGCATCCGCCGCTTCGCCCTGCTCAATACCGCCGGCTACAGCCTGGGTATCTTC
CCGCTGGAAAACCCGCTGTCGATCTACGGCGCCAACAACCTGGGCAAGAGCGCCTCGATCAACGCCCTGCAG
TTCCCGATCCTTGCCCGCCTGTCGGACATGAGCTTCGGCAAGTACAGCATGGAGCAGTCGCGGCGCTTCTAC
TTCGCCTCGGACACCAGCTACATTCTCCTCGAACTGATGCTGCCCCACGGTCCGCACGTGATCGGCGTGGCC
GGGCGCGGCCCGGGCGGCGGCTTCGGCCACCAGTTCTTCGCCTACGCCGGCGAGCTGAGCCTGGACCACTAC
CAGAAGAACGGTACCTGCCTGCGTCAGCGGGAGCTGTTCGCCAACCTCGAGCGCGAAGGCATCAAGGCCTAC
GAGGTGAAGCCGGAAGAGCTGCGCCGCCTGCTGGTCGGCGGGCACACGTCGATCCCGCTCGACCTGACCATG
ATCCCGCTACGCTCCACCAGCGAGCAGAGCCTGAAGACCTTCCGCTCGCTGTTCATCAACCTGCTGCACATG
CGCGAGATCACCGCGGCCAAGCTCAAGCAGCTGTTCCTCGACGCCTTCGAGCACAGCCTGCGCTCGGGTAAC
GTCGACTACATCGCCGCCTGCGAGGAGGCGTTCCGCGACGTGCGGCGGATGGAGCAGGACTACCAGGCGCTG
GTCGCCGCCGGCCCGCTGGTGGAAGCCCTGGCCAACGGCGTGACCCAGCGCGACGTACTGCGCGGCAAGATG
CACCGCCTTTCGCCGCTGCTCGACAGCCTGCTCGGCACCTGGCACGACTACGCCGGGGCGCGCCGCGAGGAA
CTGCTGATCCAGCACGATCAATACCGCGCCGAGCAGGACGGCCTGCAGAACGAACAGCGCGGCGGCACCCAG
GAGCTGATGCGTCTGGAGCGCGAGATCGCCGGCATCCAGCGCTGGCTCGGCGAGCTGTCGGTGCTCAAGACC
CGCTTCGCCCTGGTCGACGACGCCAAGGTCCTCGAACAGCAGTTGCTCGCCGCCAAGGATGCCCACGACGAA
CTGGCCGGCGCCCTGGCCCATTCGCGGCAGTTCTCCAGCGAAGACCTGGAAGAGCGCCTGCGCGACCTGGAA
AAACGCCTGAAGAACGTCCGCCAGCAGCTCGAACACGCCGACAACAACAGCTACGCACGCCTGCGCGAGGAG
TTCAGCCAGCAGGACGTGGAACGCCTGATGCGTCTGTTCAACGGCGCGCTGTTCAGCCTGCCGCTCGGCGAG
AACGGGGTGAACCTGGATGACGGCGACGTCTGGGTGAAGAGCGTCGAAGCCATCCTCGACCACTTCAAGGGC
GAGCATTTCGAAGCCCCTGGCCTGAGCATCGACCTGTCGCACATCGAACCGCCGGCGTTGCAGGCCCTGGCC
GACCGCGCCGCCCTGCGCGACCAGAAGGAGCGCCTGGAGAAGGAGCTGAAGCAGCTCAAGACCCAGCAGAGC
GTCGCCGCCGACCGCGCCGCGAGCAAGGCCCAGGCGGAGAAGCTGTACCAGGACGTGCTGGATGCGCAGAAG
GCCCTGGAAGACTTCCGCCGCACCCAGACGCTGACCGCCGAGGAGCCCGAGAAGCTCGCCGAACTGGCCCAG
CTGGAGGCGTCCCAGGACGAACTCAAGCGCTCCAGCGACGCCTTCGCCGAGCGCGTCCAGCAGCTCTCCGCG
CGCCTGCAACTGGTGGCCCGGCAACTGGGCGACCTGGAGGCCAAGGAGCGCACCCTGGAAGATGCCCTGCGC
CGCCGCCAGCTACTGCCGGCCGACCTGCCCTTCGGCACGCCGTTCATGGAGCCGGTGGACGACTCGCTGGAC
AACCTGCTGCCGCTGCTCAACGACTACCAGGACACCTGGCAGGCGCTGCAGCGCATCGACGGGCAGATCGAG
GCGCTGTACGCCCAGGTGCGCCTGAAGGGCGTCGCCAAGTTCGATAGCGAAGACGACACCGAGCGCCGCCTG
AAGCTGTTGATCAACGCCTACGCGCATCGCCAGGACGAGGCCCTGACGCTGGCCAAGGCGCGCCGCGCGGCG
GTCACCGACATCGCCCGGACCCTGCGCAACATCCGCAGCGACTACGACAACCTGGAACACCAGTTGGCCCTG
TTCAACCGCGAGATCAACAAGCGCCAGGTGTCCAACCTGCAGAGCTTCCGCATCGTCCTCGCGCCGAACAAG
GATGCGCTCAAGCACATCGACCAGATCATCCACAGCGCCGGCCAGTACGAGGAAGGCGAGAACCTCTCGGTG
TTCGACCTGACCCAGAGCGCCGAGCAGGACGCGAAGAACGAGGAGGCCAAGGAATACCTGGCCCGCCTGGTC
GCCGCCAACCACAACCAGTTGGGCCTGAAGGACCTGTTCGAACTGGCCTTCGAGATCACCAAGGTCAACGGC
CAGCCGATCATGCACACCGACATCGACGGCGCCGCCTCCAACGGCACCACCATGACCATCAAGGCGCTGACC
AACATGTACCTGTTGCTGCACCTGATGGACCGCGAGCAGGCCGGGCGCGTGCGCCTGCCCTACTACCTGGAC
GAGGCGGCGGACATCGACGAGCGCAACCAGGCCGCGCTGCTGGAGACCAGCCTGCAACTGGGCTTCGTGCCG
ATCCTGGCGAGCGTGAAGCCGCAGGTTTCCGCACACGTGGCGATCGACCTGGAAGGCGGTAGCGGCCCGAAC
GGCATCTATATCGACGAAGCCGACTGGAAATACATCCGTCGCCGGGATGCCGCCGCCAGCGGCGAAACCCGC
GCAGCCAGCGAGCCGGAGGAAGCCGGCGAACCGGCGTGA
Translation:
MSQTRYGIRRFALLNTAGYSLGIFPLENPLSIYGANNLGKSASINALQFPILARLSDMSFGKYSMEQSRRFY
FASDTSYILLELMLPHGPHVIGVAGRGPGGGFGHQFFAYAGELSLDHYQKNGTCLRQRELFANLEREGIKAY
EVKPEELRRLLVGGHTSIPLDLTMIPLRSTSEQSLKTFRSLFINLLHMREITAAKLKQLFLDAFEHSLRSGN
VDYIAACEEAFRDVRRMEQDYQALVAAGPLVEALANGVTQRDVLRGKMHRLSPLLDSLLGTWHDYAGARREE
LLIQHDQYRAEQDGLQNEQRGGTQELMRLEREIAGIQRWLGELSVLKTRFALVDDAKVLEQQLLAAKDAHDE
LAGALAHSRQFSSEDLEERLRDLEKRLKNVRQQLEHADNNSYARLREEFSQQDVERLMRLFNGALFSLPLGE
NGVNLDDGDVWVKSVEAILDHFKGEHFEAPGLSIDLSHIEPPALQALADRAALRDQKERLEKELKQLKTQQS
VAADRAASKAQAEKLYQDVLDAQKALEDFRRTQTLTAEEPEKLAELAQLEASQDELKRSSDAFAERVQQLSA
RLQLVARQLGDLEAKERTLEDALRRRQLLPADLPFGTPFMEPVDDSLDNLLPLLNDYQDTWQALQRIDGQIE
ALYAQVRLKGVAKFDSEDDTERRLKLLINAYAHRQDEALTLAKARRAAVTDIARTLRNIRSDYDNLEHQLAL
FNREINKRQVSNLQSFRIVLAPNKDALKHIDQIIHSAGQYEEGENLSVFDLTQSAEQDAKNEEAKEYLARLV
AANHNQLGLKDLFELAFEITKVNGQPIMHTDIDGAASNGTTMTIKALTNMYLLLHLMDREQAGRVRLPYYLD
EAADIDERNQAALLETSLQLGFVPILASVKPQVSAHVAIDLEGGSGPNGIYIDEADWKYIRRRDAAASGETR
AASEPEEAGEPA*
AnnotationID:104GeneID:94
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 08:08:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4686
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:191
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17333
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37600
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:94_cdd.html
URL:
Homologs By Global Alignment
Gene ID:94

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
178 PA4686_tr translation of PA4686 948 99.78 99.99 0 4770.0
14339 gb|AAG08073.1|AE004882_4 (AE004882) hypothetical protein PA4686 [Pseudomonas aeruginosa PAO1] 948 99.78 99.99 0 4770.0
14340 gb|AAN66318.1|AE016260_4 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 948 86.91 93.88 5 4232.0
14341 gb|AAO54522.1| (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 948 85.97 92.93 9 4191.0
GC ORFID: 43096How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4686Glimmer Score:
Start: 4790351Stop: 4793197
Length: 2847
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4686 translation of PA4686Homolog Bit Score 1842.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5160 (ORF: BLASTX 1621.0), t_PA4686 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCAGACCCGCTACGGCATCCGCCGCTTCGCCCTGCTCAATACCGCCGGCTACAGCCTGGGTATCTTC
CCGCTGGAAAACCCGCTGTCGATCTACGGCGCCAACAACCTGGGCAAGAGCGCCTCGATCAACGCCCTGCAG
TTCCCGATCCTTGCCCGCCTGTCGGACATGAGCTTCGGCAAGTACAGCATGGAGCAGTCGCGGCGCTTCTAC
TTCGCCTCGGACACCAGCTACATTCTCCTCGAACTGATGCTGCCCCACGGTCCGCACGTGATCGGCGTGGCC
GGGCGCGGCCCGGGCGGCGGCTTCGGCCACCAGTTCTTCGCCTACGCCGGCGAGCTGAGCCTGGACCACTAC
CAGAAGAACGGTACCTGCCTGCGTCAGCGGGAGCTGTTCGCCAACCTCGAGCGCGAAGGCATCAAGGCCTAC
GAGGTGAAGCCGGAAGAGCTGCGCCGCCTGCTGGTCGGCGGGCACACGTCGATCCCGCTCGACCTGACCATG
ATCCCGCTACGCTCCACCAGCGAGCAGAGCCTGAAGACCTTCCGCTCGCTGTTCATCAACCTGCTGCACATG
CGCGAGATCACCGCGGCCAAGCTCAAGCAGCTGTTCCTCGACGCCTTCGAGCACAGCCTGCGCTCGGGTAAC
GTCGACTACATCGCCGCCTGCGAGGAGGCGTTCCGCGACGTGCGGCGGATGGAGCAGGACTACCAGGCGCTG
GTCGCCGCCGGCCCGCTGGTGGAAGCCCTGGCCAACGGCGTGACCCAGCGCGACGTACTGCGCGGCAAGATG
CACCGCCTTTCGCCGCTGCTCGACAGCCTGCTCGGCACCTGGCACGACTACGCCGGGGCGCGCCGCGAGGAA
CTGCTGATCCAGCACGATCAATACCGCGCCGAGCAGGACGGCCTGCAGAACGAACAGCGCGGCGGCACCCAG
GAGCTGATGCGTCTGGAGCGCGAGATCGCCGGCATCCAGCGCTGGCTCGGCGAGCTGTCGGTGCTCAAGACC
CGCTTCGCCCTGGTCGACGACGCCAAGGTCCTCGAACAGCAGTTGCTCGCCGCCAAGGATGCCCACGACGAA
CTGGCCGGCGCCCTGGCCCATTCGCGGCAGTTCTCCAGCGAAGACCTGGAAGAGCGCCTGCGCGACCTGGAA
AAACGCCTGAAGAACGTCCGCCAGCAGCTCGAACACGCCGACAACAACAGCTACGCACGCCTGCGCGAGGAG
TTCAGCCAGCAGGACGTGGAACGCCTGATGCGTCTGTTCAACGGCGCGCTGTTCAGCCTGCCGCTCGGCGAG
AACGGGGTGAACCTGGATGACGGCGACGTCTGGGTGAAGAGCGTCGAAGCCATCCTCGACCACTTCAAGGGC
GAGCATTTCGAAGCCCCTGGCCTGAGCATCGACCTGTCGCACATCGAACCGCCGGCGTTGCAGGCCCTGGCC
GACCGCGCCGCCCTGCGCGACCAGAAGGAGCGCCTGGAGAAGGAGCTGAAGCAGCTCAAGACCCAGCAGAGC
GTCGCCGCCGACCGCGCCGCGAGCAAGGCCCAGGCGGAGAAGCTGTACCAGGACGTGCTGGATGCGCAGAAG
GCCCTGGAAGACTTCCGCCGCACCCAGACGCTGACCGCCGAGGAGCCCGAGAAGCTCGCCGAACTGGCCCAG
CTGGAGGCGTCCCAGGACGAACTCAAGCGCTCCAGCGACGCCTTCGCCGAGCGCGTCCAGCAGCTCTCCGCG
CGCCTGCAACTGGTGGCCCGGCAACTGGGCGACCTGGAGGCCAAGGAGCGCACCCTGGAAGATGCCCTGCGC
CGCCGCCAGCTACTGCCGGCCGACCTGCCCTTCGGCACGCCGTTCATGGAGCCGGTGGACGACTCGCTGGAC
AACCTGCTGCCGCTGCTCAACGACTACCAGGACACCTGGCAGGCGCTGCAGCGCATCGACGGGCAGATCGAG
GCGCTGTACGCCCAGGTGCGCCTGAAGGGCGTCGCCAAGTTCGATAGCGAAGACGACACCGAGCGCCGCCTG
AAGCTGTTGATCAACGCCTACGCGCATCGCCAGGACGAGGCCCTGACGCTGGCCAAGGCGCGCCGCGCGGCG
GTCACCGACATCGCCCGGACCCTGCGCAACATCCGCAGCGACTACGACAACCTGGAACACCAGTTGGCCCTG
TTCAACCGCGAGATCAACAAGCGCCAGGTGTCCAACCTGCAGAGCTTCCGCATCGTCCTCGCGCCGAACAAG
GATGCGCTCAAGCACATCGACCAGATCATCCACAGCGCCGGCCAGTACGAGGAAGGCGAGAACCTCTCGGTG
TTCGACCTGACCCAGAGCGCCGAGCAGGACGCGAAGAACGAGGAGGCCAAGGAATACCTGGCCCGCCTGGTC
GCCGCCAACCACAACCAGTTGGGCCTGAAGGACCTGTTCGAACTGGCCTTCGAGATCACCAAGGTCAACGGC
CAGCCGATCATGCACACCGACATCGACGGCGCCGCCTCCAACGGCACCACCATGACCATCAAGGCGCTGACC
AACATGTACCTGTTGCTGCACCTGATGGACCGCGAGCAGGCCGGGCGCGTGCGCCTGCCCTACTACCTGGAC
GAGGCGGCGGACATCGACGAGCGCAACCAGGCCGCGCTGCTGGAGACCAGCCTGCAACTGGGCTTCGTGCCG
ATCCTGGCGAGCGTGAAGCCGCAGGTTTCCGCACACGTGGCGATCGACCTGGAAGGCGGTAGCGGCCCGAAC
GGCATCTATATCGACGAAGCCGACTGGAAATACATCCGTCGCCGGGATGCCGCCGCCAGCGGCGAAACCCGC
GCAGCCAGCGAGCCGGAGGAAGCCGGCGAACCGGCGTGA