ViewGene
Locus Name:
GeneID:
Location:

GeneID:936
TrivialName: PA14_71820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71820
PAO1 Ortholog Locus:PA5440
Sequence Length:1395
Protein Length:464
Start: 6396609
Stop: 6398003
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08825.1|AE004956_9 (AE004956) probable peptidase [Pseudomonas aeruginosa PAO1]
Identities = 462/464 (99%), Positives = 462/464 (99%)
Sequence:
ATGACCGCCACCGCCCTCCGCCCCGAACTGCTGTGCCCCGCCGGCACCCTGAAAAGCATGCGCTATGCCTTC
GCCTACGGCGCCGATGCCGTCTACGCCGGGCAGCCGCGCTACAGCCTGCGGGTGCGCAACAACGATTTCGAC
CACGCCCAACTGGCCGAAGGCATCGCCGAGGCCCACGCGCTCGGCAAGCGCTTCTACGTGGTGGTCAACATC
GCCCCGCACAACGCCAAGCTGAAGACCTTCCTGCGCGACCTGGAGCCGGTGGTCGCCATGGGTCCGGATGCG
CTGATCATGTCCGATCCCGGCCTGATCATGCTGGTTCGCCAGCATTTCCCGCAGATGCCCATCCACCTGTCG
GTGCAGGCCAACGCGGTGAACTGGGCCGCGGTGCAGTTCTGGCGGCAGCAGGGCCTGACCCGGGTGATCCTT
TCCCGCGAGCTGTCGCTGGAGGAGATCGAGGAAATCCGCCAGCAGGTGCCGGACATGGAGCTGGAAGTGTTC
GTCCACGGCGCTTTGTGCATGGCCTATTCCGGGCGCTGCCTGCTGTCCGGCTACATCAACCGCCGCGACCCC
AACCAGGGCACCTGCACCAATGCCTGCCGCTGGGAATACAAGGCGGTGGAGGGCCGCGAGGACGAGCTGGGC
AACGTGGTGGCGCGGGAGCCGACCCTGGGACGCGGCGCGCCGACCGAGCAGGTATTCCTCCTCGAGGAAGGC
AACCGTCCCGGCGAACCGATGGCCGCCTTCGAGGACGAACACGGCACCTACATCATGAATTCCAAGGACCTC
CGCGCCGTGCAGCACGTCGAGCGGCTGGCGCGGATCGGCGTGCACTCGCTGAAGATCGAGGGCCGTACCAAG
TCCCACTACTACGTGGCGCGCACCGCCCAGGTCTACCGCCAGGCGATCGACGACGCGGCGGCCGGCAAGCCG
TTCGACCGCGGTCTGATGGACACCTTGGAGTCCCTCGCCCACCGCGGCTACACCGAGGGCTTCCTGCGCCGC
CACGTGCACGACGAGTACCAGAACTACCAGCACGGCCATTCGCTGTCCGAGCGCCAGCAGTTCGTCGGCGAA
CTCACCGGCGAACGCCGCGACGGCCTGGCCGAGGTGGAGGTGAAGAACCGCTTCCAGCGCGGCGACAGCGTC
GAACTGATGACTCCGCGAGGCAACCTGAGCCTGCGCGTGGAGGACCTGCGCAACGCCGCCGGCGAAGCCATT
GAGGTGGCGCCGGGCAATGGCCACGTGGTCTACCTGGCGCTGCCGGAAGGCCTGGATCTGCGCTACGCGCTA
CTGATGCGCGATCTCCAGCCCGGCCAGGATACCCGCCAGCCGCAGGCCGAACGCAGCGGCGGGTGTGCCGGC
AAGGGCGCTTGCGGCTGCGCTCACTGA
Translation:
MTATALRPELLCPAGTLKSMRYAFAYGADAVYAGQPRYSLRVRNNDFDHAQLAEGIAEAHALGKRFYVVVNI
APHNAKLKTFLRDLEPVVAMGPDALIMSDPGLIMLVRQHFPQMPIHLSVQANAVNWAAVQFWRQQGLTRVIL
SRELSLEEIEEIRQQVPDMELEVFVHGALCMAYSGRCLLSGYINRRDPNQGTCTNACRWEYKAVEGREDELG
NVVAREPTLGRGAPTEQVFLLEEGNRPGEPMAAFEDEHGTYIMNSKDLRAVQHVERLARIGVHSLKIEGRTK
SHYYVARTAQVYRQAIDDAAAGKPFDRGLMDTLESLAHRGYTEGFLRRHVHDEYQNYQHGHSLSERQQFVGE
LTGERRDGLAEVEVKNRFQRGDSVELMTPRGNLSLRVEDLRNAAGEAIEVAPGNGHVVYLALPEGLDLRYAL
LMRDLQPGQDTRQPQAERSGGCAGKGACGCAH*
AnnotationID:945GeneID:936
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 16:04:43
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase
Cell Localization:()
Synonyms:yegQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative protease
Functional Category Confidence Code:5
COGs:pfam01136
Secondary Functional Category(ies):translation, post-translational modificatio, degradation
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN81067.1|AE016763_26 (AE016763) Putative protease yegQ [Escherichia coli CFT073]
          Length = 453

 Score =  703 bits (1815), Expect = 0.0
 Identities = 339/452 (75%), Positives = 392/452 (86%), Gaps = 10/452 (2%)

>gb|AAL21039.1| (AE008795) putative protease [Salmonella typhimurium LT2]
          Length = 453

 Score =  699 bits (1805), Expect = 0.0
 Identities = 339/452 (75%), Positives = 391/452 (86%), Gaps = 10/452 (2%)

>emb|CAC92106.1| (AJ414154) putative protease [Yersinia pestis CO92]
          Length = 464

 Score =  691 bits (1783), Expect = 0.0
 Identities = 337/454 (74%), Positives = 386/454 (85%), Gaps = 10/454 (2%)






 
Structural Features:
pfam01136, Peptidase_U32, Peptidase family U32.
CD-Length = 227 residues,  99.6% aligned
Score =  265 bits (680), Expect = 5e-72
Identities = 111/263 (42%), Positives = 149/263 (56%), Gaps = 39/263 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1875




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19017




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:936
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1655
                           PA5440_tr
                           translation of PA5440
                           464
                           99.56
                           99.56
                           0
                           2418.0
     

     
     
59048
                           gb|AAG08825.1|AE004956_9
                           (AE004956) probable peptidase [Pseudomonas aeruginosa PAO1]
                           464
                           99.56
                           99.56
                           0
                           2418.0
     

     
     
59057
                           gb|AAL21039.1|
                           (AE008795) putative protease [Salmonella typhimurium LT2]
                           473
                           71.67
                           82.66
                           29
                           1812.0
     

     
     
59059
                           emb|CAD02515.1|
                           (AL627273) putative protease [Salmonella enterica subsp. enterica serovar Typhi]
                           473
                           71.67
                           82.66
                           29
                           1812.0
     

     
     
59058
                           gb|AAO68415.1|
                           (AE016836) putative protease [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           473
                           71.67
                           82.66
                           29
                           1812.0
     

     






      

          
GC ORFID: 43938How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5440Glimmer Score: 

          
Start: 5660298Stop: 5661692

          
Length: 1395


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5440 translation of PA5440Homolog Bit Score 936.0

          
Other Homologs:  t_PA5440 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCACCGCCCTCCGCCCCGAACTGCTGTGCCCCGCCGGCACCCTGAAAAGCATGCGCTATGCCTTC 
GCCTACGGCGCCGATGCCGTCTACGCCGGGCAGCCGCGCTACAGCCTGCGGGTGCGCAACAACGATTTCGAC 
CACGCCCAACTGGCCGAAGGCATCGCCGAGGCCCACGCGCTCGGCAAGCGCTTCTACGTGGTGGTCAACATC 
GCCCCGCACAACGCCAAGCTGAAGACCTTCCTGCGCGACCTGGAGCCGGTGGTCGCCATGGGTCCGGATGCG 
CTGATCATGTCCGATCCCGGCCTGATCATGCTGGTTCGCCAGCATTTCCCGCAGATGCCCATCCACCTGTCG 
GTGCAGGCCAACGCGGTGAACTGGGCCGCGGTGCAGTTCTGGCGGCAGCAGGGCCTGACCCGGGTGATCCTT 
TCCCGCGAGCTGTCGCTGGAGGAGATCGAGGAAATCCGCCAGCAGGTGCCGGACATGGAGCTGGAAGTGTTC 
GTCCACGGCGCTTTGTGCATGGCCTATTCCGGGCGCTGCCTGCTGTCCGGCTACATCAACCGCCGCGACCCC 
AACCAGGGCACCTGCACCAATGCCTGCCGCTGGGAATACAAGGCGGTGGAGGGCCGCGAGGACGAGCTGGGC 
AACGTGGTGGCGCGGGAGCCGACCCTGGGACGCGGCGCGCCGACCGAGCAGGTATTCCTCCTCGAGGAAGGC 
AACCGTCCCGGCGAACCGATGGCCGCCTTCGAGGACGAACACGGCACCTACATCATGAATTCCAAGGACCTC 
CGCGCCGTGCAGCACGTCGAGCGGCTGGCGCGGATCGGCGTGCACTCGCTGAAGATCGAGGGCCGTACCAAG 
TCCCACTACTACGTGGCGCGCACCGCCCAGGTCTACCGCCAGGCGATCGACGACGCGGCGGCCGGCAAGCCG 
TTCGACCGCGGTCTGATGGACACCTTGGAGTCCCTCGCCCACCGCGGCTACACCGAGGGCTTCCTGCGCCGC 
CACGTGCACGACGAGTACCAGAACTACCAGCACGGCCATTCGCTGTCCGAGCGCCAGCAGTTCGTCGGCGAA 
CTCACCGGCGAACGCCGCGACGGCCTGGCCGAGGTGGAGGTGAAGAACCGCTTCCAGCGCGGCGACAGCGTC 
GAACTGATGACTCCGCGAGGCAACCTGAGCCTGCGCGTGGAGGACCTGCGCAACGCCGCCGGCGAAGCCATT 
GAGGTGGCGCCGGGCAATGGCCACGTGGTCTACCTGGCGCTGCCGGAAGGCCTGGATCTGCGCTACGCGCTA 
CTGATGCGCGATCTCCAGCCCGGCCAGGATACCCGCCAGCCGCAGGCCGAACGCAGCGGCGGGTGTGCCGGC 
AAGGGCGCTTGCGGCTGCGCTCACTGA