ViewGene
Locus Name:
GeneID:
Location:

GeneID:935
TrivialName: PA14_60770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60770
PAO1 Ortholog Locus:PA4592
Sequence Length:1482
Protein Length:493
Start: 5417003
Stop: 5415522
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07980.1|AE004873_2 (AE004873) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 491/493 (99%), Positives = 491/493 (99%)
Sequence:
ATGAATAGGTGGGGCCTGGGCGTGCTGTGGCTGGTCGCCGCTCTTCCGGTGGCGGCCAGCGTCAACCCGGCG
CTGAGTCCGGACGTACCGAGCATGGCCCGCGAGCAGGGCAGGTCGGTGCTGCTCAGCGAGCAGGTGATCGAC
CTCAGCCTGAGCGACGCGGTCTATCTTGGCCTGCGCAACAACCGTGGAATCCGTAGCGCCTACCTGCAACGG
ATCGCGCAGAAGTTCGACCTGCGGGTCGCCGCCGACGCCTTCAACCCGAAGCTGGTGGTGCGCGGCGACTAT
CGCGCCAACCGCGCCACCGAAGACCGCACGAGGACCAGCAATGTCTCGCCCACCGCGACCCTGCTTGGCGAA
TATGGCACTCGTTTCAGCCTGGCCTGGGTGAAGCAGTTCCGCACCGCCGACGAGGCCGGGCGCTACCGCAGC
GATGGCCTCGACCTGACCGTCGTCCAGCCGTTGCTGCGCGATGCGGGCTGGGACGTCACCACCGCGCCGCTG
CGCCTGGCACGTCTCTCCGAAGACGCCAATCGCCTGCAACTCAAGGCCAGCGTGTCGCAGACCATCAGCCAG
GTCATCGGTGCCTACCGGGAGCTGCTGCGCGCCCAGGAGCAGGCGCGCATCGCTCGCGAAGCCCTGGCGCGG
ACCCAGGAGCTGCTCGAGGTCAACCGGGCGATGATCCGCGCCGGGCGAATGGCCGAATTCGAGATCGTGCAG
ACCGAGGCCGACGTCGCCAGCCAGGAGCTCAACGTCGAGGAGTCCGCCAACCAGGTCGACAGCGCACGCCTG
GCCCTGCTGCAACTGCTGGCGCTGGACCTGTCGACGCAGATCCGCGCCAGCGATGCGCTGGCCGCCACGCCG
ATCGAGGTCGACCGCCAGCAGGCGATCAGGACCGCCCTGCAGCAGCAACCGGAATACCTGCAACGCCTGATC
GGCAGTCGCCAGGCCGACCTCAACCTGGTGCTGGCGAAGAACCAGCGCCTGTGGGATGTCTCGCTGGTGGGC
GGCGCCAGCCAGATCCGCGACCGCTACAGCGAGGGCGGTGGCGACAATTCACGCAGCTGGGACAGCTACGCC
GGGGTACAGGTGGAAATTCCCATCGGCGACCTCAGCCGCCGGCAGGCCGAGGTGCGCGCCCAGGTCGACGTG
GAGAACCAGAAGATCCTGATCGAGGATGCCCGGCAGACCCTGGAGCAGAACGTCATCGATGCGGTGCGCGAC
CTCGGCACGCGCTGGCGCCAGTACCAGATCGCCCAGCGCGCCACCGCCTTGTCGCGGCGCAAGCTGGAGATC
GAGCGGGAAAAGCTGCGCGTCGGGCGTTCGAGCAACTTCCAGGTGCTGAGCTTCGAGACCGACCTGCGCAAC
GTCGAGAACACCCAATTGAATGCCCTGATCTCGTTTCTCAATGCGCAGACGCAGCTCGACCTGATCGTCGGC
ATGACCCTGGATAGCTGGGAGATTTCGCTCAATGACCACTGA
Translation:
MNRWGLGVLWLVAALPVAASVNPALSPDVPSMAREQGRSVLLSEQVIDLSLSDAVYLGLRNNRGIRSAYLQR
IAQKFDLRVAADAFNPKLVVRGDYRANRATEDRTRTSNVSPTATLLGEYGTRFSLAWVKQFRTADEAGRYRS
DGLDLTVVQPLLRDAGWDVTTAPLRLARLSEDANRLQLKASVSQTISQVIGAYRELLRAQEQARIAREALAR
TQELLEVNRAMIRAGRMAEFEIVQTEADVASQELNVEESANQVDSARLALLQLLALDLSTQIRASDALAATP
IEVDRQQAIRTALQQQPEYLQRLIGSRQADLNLVLAKNQRLWDVSLVGGASQIRDRYSEGGGDNSRSWDSYA
GVQVEIPIGDLSRRQAEVRAQVDVENQKILIEDARQTLEQNVIDAVRDLGTRWRQYQIAQRATALSRRKLEI
EREKLRVGRSSNFQVLSFETDLRNVENTQLNALISFLNAQTQLDLIVGMTLDSWEISLNDH*
AnnotationID:944GeneID:935
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 06:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:PA4592
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1538
Secondary Functional Category(ies):cell envelope biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO91304.1| (AE016965) outer membrane efflux family protein [Coxiella burnetii
           RSA 493]
          Length = 507

 Score =  184 bits (467), Expect = 1e-45
 Identities = 140/467 (29%), Positives = 224/467 (47%), Gaps = 48/467 (10%)






 
Structural Features:
COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / 
Intracellular trafficking and secretion]
CD-Length = 457 residues,  96.3% aligned
Score =  142 bits (359), Expect = 2e-34
Identities = 117/473 (24%), Positives = 180/473 (38%), Gaps = 35/473 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1873




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19015




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31629




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:935_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:935
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1654
                           PA4592_tr
                           translation of PA4592
                           493
                           99.59
                           99.59
                           0
                           2418.0
     

     
     
59046
                           gb|AAG07980.1|AE004873_2
                           (AE004873) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           493
                           99.59
                           99.59
                           0
                           2418.0
     

     
     
59047
                           emb|CAE15020.1|
                           (BX571867) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           499
                           62.92
                           78.35
                           13
                           1519.0
     

     






      

          
GC ORFID: 43937How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4592Glimmer Score: 

          
Start: 4680683Stop: 4679202

          
Length: 1482


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4592 translation of PA4592Homolog Bit Score 936.0

          
Other Homologs:  t_PA4592 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATAGGTGGGGCCTGGGCGTGCTGTGGCTGGTCGCCGCTCTTCCGGTGGCGGCCAGCGTCAACCCGGCG 
CTGAGTCCGGACGTACCGAGCATGGCCCGCGAGCAGGGCAGGTCGGTGCTGCTCAGCGAGCAGGTGATCGAC 
CTCAGCCTGAGCGACGCGGTCTATCTTGGCCTGCGCAACAACCGTGGAATCCGTAGCGCCTACCTGCAACGG 
ATCGCGCAGAAGTTCGACCTGCGGGTCGCCGCCGACGCCTTCAACCCGAAGCTGGTGGTGCGCGGCGACTAT 
CGCGCCAACCGCGCCACCGAAGACCGCACGAGGACCAGCAATGTCTCGCCCACCGCGACCCTGCTTGGCGAA 
TATGGCACTCGTTTCAGCCTGGCCTGGGTGAAGCAGTTCCGCACCGCCGACGAGGCCGGGCGCTACCGCAGC 
GATGGCCTCGACCTGACCGTCGTCCAGCCGTTGCTGCGCGATGCGGGCTGGGACGTCACCACCGCGCCGCTG 
CGCCTGGCACGTCTCTCCGAAGACGCCAATCGCCTGCAACTCAAGGCCAGCGTGTCGCAGACCATCAGCCAG 
GTCATCGGTGCCTACCGGGAGCTGCTGCGCGCCCAGGAGCAGGCGCGCATCGCTCGCGAAGCCCTGGCGCGG 
ACCCAGGAGCTGCTCGAGGTCAACCGGGCGATGATCCGCGCCGGGCGAATGGCCGAATTCGAGATCGTGCAG 
ACCGAGGCCGACGTCGCCAGCCAGGAGCTCAACGTCGAGGAGTCCGCCAACCAGGTCGACAGCGCACGCCTG 
GCCCTGCTGCAACTGCTGGCGCTGGACCTGTCGACGCAGATCCGCGCCAGCGATGCGCTGGCCGCCACGCCG 
ATCGAGGTCGACCGCCAGCAGGCGATCAGGACCGCCCTGCAGCAGCAACCGGAATACCTGCAACGCCTGATC 
GGCAGTCGCCAGGCCGACCTCAACCTGGTGCTGGCGAAGAACCAGCGCCTGTGGGATGTCTCGCTGGTGGGC 
GGCGCCAGCCAGATCCGCGACCGCTACAGCGAGGGCGGTGGCGACAATTCACGCAGCTGGGACAGCTACGCC 
GGGGTACAGGTGGAAATTCCCATCGGCGACCTCAGCCGCCGGCAGGCCGAGGTGCGCGCCCAGGTCGACGTG 
GAGAACCAGAAGATCCTGATCGAGGATGCCCGGCAGACCCTGGAGCAGAACGTCATCGATGCGGTGCGCGAC 
CTCGGCACGCGCTGGCGCCAGTACCAGATCGCCCAGCGCGCCACCGCCTTGTCGCGGCGCAAGCTGGAGATC 
GAGCGGGAAAAGCTGCGCGTCGGGCGTTCGAGCAACTTCCAGGTGCTGAGCTTCGAGACCGACCTGCGCAAC 
GTCGAGAACACCCAATTGAATGCCCTGATCTCGTTTCTCAATGCGCAGACGCAGCTCGACCTGATCGTCGGC 
ATGACCCTGGATAGCTGGGAGATTTCGCTCAATGACCACTGA