ViewGene
Locus Name:
GeneID:
Location:

GeneID:932
TrivialName: PA14_18830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18830
PAO1 Ortholog Locus:PA3517
Sequence Length:1434
Protein Length:477
Start: 1623369
Stop: 1624802
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06905.1|AE004772_3 (AE004772) probable lyase [Pseudomonas aeruginosa PAO1]
Identities = 476/477 (99%), Positives = 476/477 (99%)
Sequence:
ATGCCAAGTCACATTACGGAATCCCGTATACACGGGGGCGCCTACTCGTCCCCGGCATTCGCCGCGATCTTT
TCCGATACCAACCAGGTGCGGAGGTGGCTGGATGTCGAGCGAGCCTTGGCGGCGACCCAGGCCGAGATGGGC
ATCATCCCCCACGAGGCGGCGCGGGAGAtcGACCGCGCCGCCCAGGTGGAGCGCTTCGACCTCACCCAACTG
GGCCGCGAAAGCCTGGAGACAGGGCACCTGCTGGTGCCTACCATCCGCGCCCTGGCGAGGTCGTGCGAGGGT
AGCTGGGGGGAGTACGTGCACTATGGCGTGACCACCCAGGACATCCTCGACACCGGGCTGATGCTGCAGGTC
AAGGAAGCCTGGGGCCATGCGCTCGGGCTCCTGCACTCGATCCGTGGCCATCTGCTGGCGCTTGCCCTGCGC
CACCAGCACACGCCGATGGTTGCACGCACCCACGGGCAGCAGGCGCTGCCCACGACCTTCGGCTACAAGGTC
GCCGTCTGGGTGGATGAAATCGACCGTCACCTGGCGCGCTTCGACGAAGCGCGCGAACGCGTCCTGGTCGGC
AACCTGACCGGTGCCGTGGGAACCCTGGCGTCGTTCGGCGCCCAGGGCTTCGAGCTACAGCGGCGAACCCTG
GCCAGGCTTGGCCTCGGCGCGCCGTCGACCAGTTGGCACAGCGCCCGGGACCGGGTGCTGGAGGTTGCCGGG
TTGCTGGTCCAGGTGTCGGTGACGCTGGGCCGGGTGGCGAACGAGATCTACCACCTGCAGCGCAGCGAAATC
GACGAGGTACGCGAGGGCAGCCGGCCGGGACAGGTGGGCAGCAGCACCATGCCGCACAAGCGGAACCCGTCG
TCGGTCGACCTGGTCAGCGCGCTGTCGCGGCTGGTGCGGGCGCAGATGGTGGCGCTCACCGATGCCGCGTTC
CAGTTGCACGAGCGCGACGGCACCGCCTGGCGCATCGAGTGGGCGGCGTTGCCGGAGCTGTTCGTCTACGCC
GGCGCCTTGCTGACCCGCATGGAGGCGGTGCTGGCCGAGGGGCTCGAGGTGCGCGAGGAACGCATGCGCACC
AACCTCGACCTCCTGGGTGGGCTGATCCTGTCGGAGCGGGTGATGCTCGCGCTGGCGGGGCAGTTCGGCAAG
CAGACCGCCCACGAACTGCTCCATGAGATAACCCAGGCCTCCCAGCGGCAGGGCGTTCCGTTCCGCGAGGCG
CTGCTCGGGCAGCCAAGGTTGCGCGGCTGTTTCAGCGCCGAGGCGCTCGAAGAACTGCTCGACCCCGTCGGC
TACGTCGGCCTCGCCGCGGAGATGGTCGACCTGGTCGCCGACAAACCACGAACCGGCGCGTCGGGCGACAGG
CCCGAAGGCGCCGCCTCTTCCCAAGGAAATCCCGGTCAGTCCCAGTACGTGATGGAGGATAGGTGA
Translation:
MPSHITESRIHGGAYSSPAFAAIFSDTNQVRRWLDVERALAATQAEMGIIPHEAAREIDRAAQVERFDLTQL
GRESLETGHLLVPTIRALARSCEGSWGEYVHYGVTTQDILDTGLMLQVKEAWGHALGLLHSIRGHLLALALR
HQHTPMVARTHGQQALPTTFGYKVAVWVDEIDRHLARFDEARERVLVGNLTGAVGTLASFGAQGFELQRRTL
ARLGLGAPSTSWHSARDRVLEVAGLLVQVSVTLGRVANEIYHLQRSEIDEVREGSRPGQVGSSTMPHKRNPS
SVDLVSALSRLVRAQMVALTDAAFQLHERDGTAWRIEWAALPELFVYAGALLTRMEAVLAEGLEVREERMRT
NLDLLGGLILSERVMLALAGQFGKQTAHELLHEITQASQRQGVPFREALLGQPRLRGCFSAEALEELLDPVG
YVGLAAEMVDLVADKPRTGASGDRPEGAASSQGNPGQSQYVMEDR*
AnnotationID:941GeneID:932
AnnotatorUID: diggins
Modification Date/Time: 2005-07-31 10:10:16
Gene Name:
Confidence Code:3
GeneProduct:putative lyase
Cell Localization:()
Synonyms:PA3517
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00206,COG0015,COG0165
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB73819.1| (AL139078) putative fumarate lyase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
          Length = 455

 Score =  358 bits (918), Expect = 5e-98
 Identities = 189/448 (42%), Positives = 277/448 (61%), Gaps = 1/448 (0%)

>gb|AAM02298.1| (AE010397) Adenylosuccinate lyase [Methanopyrus kandleri AV19]
          Length = 472

 Score =  275 bits (702), Expect = 6e-73
 Identities = 181/461 (39%), Positives = 256/461 (55%), Gaps = 20/461 (4%)







 
Structural Features:
pfam00206, Lyase_1, Lyase.
CD-Length = 312 residues,  98.1% aligned
Score =  132 bits (333), Expect = 1e-31
Identities = 73/306 (23%), Positives = 111/306 (36%), Gaps = 20/306 (6%)

COG0015, PurB, Adenylosuccinate lyase 
[Nucleotide transport and metabolism]
CD-Length = 438 residues, 100.0% aligned
Score =  466 bits (1200), Expect = 3e-132
Identities = 210/439 (47%), Positives = 264/439 (60%), Gaps = 3/439 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1867




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19009




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32047




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:932_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:932
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1650
                           PA3517_tr
                           translation of PA3517
                           477
                           99.79
                           99.79
                           0
                           2419.0
     

     
     
59009
                           gb|AAG06905.1|AE004772_3
                           (AE004772) probable lyase [Pseudomonas aeruginosa PAO1]
                           477
                           99.79
                           99.79
                           0
                           2419.0
     

     
     
59010
                           emb|CAB73819.1|
                           (AL139078) putative fumarate lyase [Campylobacter jejuni subsp. jejuni NCTC 11168]
                           478
                           39.53
                           57.94
                           24
                           907.0
     

     
     
1651
                           PA3516_tr
                           translation of PA3516
                           509
                           37.52
                           51.27
                           58
                           876.0
     

     
     
59011
                           gb|AAG06904.1|AE004772_2
                           (AE004772) probable lyase [Pseudomonas aeruginosa PAO1]
                           509
                           37.52
                           51.27
                           58
                           876.0
     

     






      

          
GC ORFID: 43934How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3517Glimmer Score: 

          
Start: 3330565Stop: 3329132

          
Length: 1434


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3517 translation of PA3517Homolog Bit Score 936.0

          
Other Homologs:  t_PA3517 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAAGTCACATTACGGAATCCCGTATACACGGGGGCGCCTACTCGTCCCCGGCATTCGCCGCGATCTTT 
TCCGATACCAACCAGGTGCGGAGGTGGCTGGATGTCGAGCGAGCCTTGGCGGCGACCCAGGCCGAGATGGGC 
ATCATCCCCCACGAGGCGGCGCGGGAGAtcGACCGCGCCGCCCAGGTGGAGCGCTTCGACCTCACCCAACTG 
GGCCGCGAAAGCCTGGAGACAGGGCACCTGCTGGTGCCTACCATCCGCGCCCTGGCGAGGTCGTGCGAGGGT 
AGCTGGGGGGAGTACGTGCACTATGGCGTGACCACCCAGGACATCCTCGACACCGGGCTGATGCTGCAGGTC 
AAGGAAGCCTGGGGCCATGCGCTCGGGCTCCTGCACTCGATCCGTGGCCATCTGCTGGCGCTTGCCCTGCGC 
CACCAGCACACGCCGATGGTTGCACGCACCCACGGGCAGCAGGCGCTGCCCACGACCTTCGGCTACAAGGTC 
GCCGTCTGGGTGGATGAAATCGACCGTCACCTGGCGCGCTTCGACGAAGCGCGCGAACGCGTCCTGGTCGGC 
AACCTGACCGGTGCCGTGGGAACCCTGGCGTCGTTCGGCGCCCAGGGCTTCGAGCTACAGCGGCGAACCCTG 
GCCAGGCTTGGCCTCGGCGCGCCGTCGACCAGTTGGCACAGCGCCCGGGACCGGGTGCTGGAGGTTGCCGGG 
TTGCTGGTCCAGGTGTCGGTGACGCTGGGCCGGGTGGCGAACGAGATCTACCACCTGCAGCGCAGCGAAATC 
GACGAGGTACGCGAGGGCAGCCGGCCGGGACAGGTGGGCAGCAGCACCATGCCGCACAAGCGGAACCCGTCG 
TCGGTCGACCTGGTCAGCGCGCTGTCGCGGCTGGTGCGGGCGCAGATGGTGGCGCTCACCGATGCCGCGTTC 
CAGTTGCACGAGCGCGACGGCACCGCCTGGCGCATCGAGTGGGCGGCGTTGCCGGAGCTGTTCGTCTACGCC 
GGCGCCTTGCTGACCCGCATGGAGGCGGTGCTGGCCGAGGGGCTCGAGGTGCGCGAGGAACGCATGCGCACC 
AACCTCGACCTCCTGGGTGGGCTGATCCTGTCGGAGCGGGTGATGCTCGCGCTGGCGGGGCAGTTCGGCAAG 
CAGACCGCCCACGAACTGCTCCATGAGATAACCCAGGCCTCCCAGCGGCAGGGCGTTCCGTTCCGCGAGGCG 
CTGCTCGGGCAGCCAAGGTTGCGCGGCTGTTTCAGCGCCGAGGCGCTCGAAGAACTGCTCGACCCCGTCGGC 
TACGTCGGCCTCGCCGCGGAGATGGTCGACCTGGTCGCCGACAAACCACGAACCGGCGCGTCGGGCGACAGG 
CCCGAAGGCGCCGCCTCTTCCCAAGGAAATCCCGGTCAGTCCCAGTACGTGATGGAGGATAGGTGA