ViewGene

Locus Name:
GeneID:
Location:

GeneID:931
TrivialName: PA14_39720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39720
PAO1 Ortholog Locus:PA1918
Sequence Length:1401
Protein Length:466
Start: 3539082
Stop: 3540482
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05306.1|AE004617_10 (AE004617) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 462/466 (99%), Positives = 464/466 (99%)
Sequence:
ATGAAACTCACGCTCACCCCTCCCCTGACCCCCAGCCACTGGATGCGCTCGACCGACCTGGCCGACGCCGCC
AGCGCCCCCCTCGTCGGCACCCACTCGGCAGACGTGGCGATAGTCGGCGGCGGTTTCGTCGGGCTCTGGACC
GCCATCACCCTCAAGCAACTGGAGCCGGACGCACGGGTCCTGCTGCTGGAGCAGGACGTCTGCGGCGGCGGC
GCTTCCGGCAGGAACGGTGGTTTCGTGATGTCCTGGTGGCCGAAGATCGGCACCTTGCTGGGCTTCTGCAAC
GAGGCGCAGGCGCGCTTCCTTGGCGAAAGCGCGGAGCGGGCGATCCAGGAACTCGGGGAGTTCTGCGCGCGG
CATGACATCGATGCGCACTTCCAGCAGAAGGGCTGGCTGTGGACCGCCACCACGGCGCACCACCTCGACGCC
TGGAACGATACCCTCGCCGCCTGCGAACGGCTCGGCGTCAGTCCCTTCGAACGCCTCGACGCCAGCGAAGTG
GCACGCCGGACCGGTTCGCCGGTGCATCTCGCCGGGGTCTTCGAGCGCAGCAATGCCACCGTGCAACCAGCC
TTGCTGGTGCAAGGCATGCGCCGCGTAGCGCTGGCCCTCGGCGTGGAAATCCACGAGCGCTGTGGCGTCAGC
CAGATCGTTCCCGGCCAGCCGGCACAGCTGCTGAGCGCCGGGGCCCGGGTCCAGGCCAAGGCGGTGGTTCTC
GCGACCAACGCCTGGTCGGCCGCCCTGCCCAGGCTCTCCAGGCTGATCGTGCCGGTGAACAGTTCCATCGCG
GTTACCGAGGCGATACCGCAACGGCTGGAGCGAATCGGCTGGACCGGCGGGGAAGCCATCACCGATTCCCAA
CTGATGGTGGACTACTACCGCACCACCCGCGACGGGCGCATCGCCTTCGGCAAGGGCACCGGCGCCATCAGC
TACGGCTCGCGCATCGGCCGGGTATTCGACGTCGACCGGGAGAGCCTGGCCCTGACCGAGGCCGACTTCCGC
CGCACCTATCCCTCGCTAGGCGACATCCCGCTGGTCGACGGCTGGTCCGGCCCCATCGACCGTACCTACGAC
AGCCTGCCGGTCTTCGGCCACCTGCACGAGAACATCCACTACGGCATCGGCTGGAGCGGCAACGGCGTGGGA
CCGAGCCGCCTGGGCGGGCGGATCCTCGCCAGCCTCGCCCTCGGCCGCGACGACCCGTGGAGCCGTTGTCCG
CTGGTAGAACGCCGCTGCCGGAGCTTCCCCCCCGAGCCGCTGCGCTACCTGGGTGGCTCCCTGGTGCGCAAC
GCCGTCCTGCGCAAGGAACGCGCGGAACTCGCCGGTACCGCGCCCTCGGCCACCGACCGCTTTCTCGCGCGC
TTCGCCCCCGCCGGCCTTGAAGACAAATCCTGA
Translation:
MKLTLTPPLTPSHWMRSTDLADAASAPLVGTHSADVAIVGGGFVGLWTAITLKQLEPDARVLLLEQDVCGGG
ASGRNGGFVMSWWPKIGTLLGFCNEAQARFLGESAERAIQELGEFCARHDIDAHFQQKGWLWTATTAHHLDA
WNDTLAACERLGVSPFERLDASEVARRTGSPVHLAGVFERSNATVQPALLVQGMRRVALALGVEIHERCGVS
QIVPGQPAQLLSAGARVQAKAVVLATNAWSAALPRLSRLIVPVNSSIAVTEAIPQRLERIGWTGGEAITDSQ
LMVDYYRTTRDGRIAFGKGTGAISYGSRIGRVFDVDRESLALTEADFRRTYPSLGDIPLVDGWSGPIDRTYD
SLPVFGHLHENIHYGIGWSGNGVGPSRLGGRILASLALGRDDPWSRCPLVERRCRSFPPEPLRYLGGSLVRN
AVLRKERAELAGTAPSATDRFLARFAPAGLEDKS*
AnnotationID:940GeneID:931
AnnotatorUID: diggins
Modification Date/Time: 2005-06-05 18:06:45
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid oxidase
Cell Localization:()
Synonyms:PA1918
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:1.4.3.3
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues, 100.0% aligned
Score =  151 bits (382), Expect = 2e-37
Identities = 100/404 (24%), Positives = 145/404 (35%), Gaps = 27/404 (6%)
Genomic Context:
Comment:
ReferenceID:1865
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19007
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37031
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:931_cdd.html
URL:
Homologs By Global Alignment
Gene ID:931

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1648 PA1918_tr translation of PA1918 466 99.14 99.57 0 2419.0
59000 gb|AAG05306.1|AE004617_10 (AE004617) hypothetical protein PA1918 [Pseudomonas aeruginosa PAO1] 466 99.14 99.57 0 2419.0
59001 emb|CAE43377.1| (BX640420) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 479 56.78 69.10 13 1404.0
59003 emb|CAE34325.1| (BX640449) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 479 56.57 69.10 13 1401.0
59002 emb|CAE38811.1| (BX640433) conserved hypothetical protein [Bordetella parapertussis] 479 56.57 69.10 13 1401.0
GC ORFID: 43933How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1918Glimmer Score:
Start: 1414829Stop: 1413429
Length: 1401
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1918 translation of PA1918Homolog Bit Score 936.0
Other Homologs: t_PA1567 (ORF: BLASTX 369.0), t_PA1918 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACTCACGCTCACCCCTCCCCTGACCCCCAGCCACTGGATGCGCTCGACCGACCTGGCCGACGCCGCC
AGCGCCCCCCTCGTCGGCACCCACTCGGCAGACGTGGCGATAGTCGGCGGCGGTTTCGTCGGGCTCTGGACC
GCCATCACCCTCAAGCAACTGGAGCCGGACGCACGGGTCCTGCTGCTGGAGCAGGACGTCTGCGGCGGCGGC
GCTTCCGGCAGGAACGGTGGTTTCGTGATGTCCTGGTGGCCGAAGATCGGCACCTTGCTGGGCTTCTGCAAC
GAGGCGCAGGCGCGCTTCCTTGGCGAAAGCGCGGAGCGGGCGATCCAGGAACTCGGGGAGTTCTGCGCGCGG
CATGACATCGATGCGCACTTCCAGCAGAAGGGCTGGCTGTGGACCGCCACCACGGCGCACCACCTCGACGCC
TGGAACGATACCCTCGCCGCCTGCGAACGGCTCGGCGTCAGTCCCTTCGAACGCCTCGACGCCAGCGAAGTG
GCACGCCGGACCGGTTCGCCGGTGCATCTCGCCGGGGTCTTCGAGCGCAGCAATGCCACCGTGCAACCAGCC
TTGCTGGTGCAAGGCATGCGCCGCGTAGCGCTGGCCCTCGGCGTGGAAATCCACGAGCGCTGTGGCGTCAGC
CAGATCGTTCCCGGCCAGCCGGCACAGCTGCTGAGCGCCGGGGCCCGGGTCCAGGCCAAGGCGGTGGTTCTC
GCGACCAACGCCTGGTCGGCCGCCCTGCCCAGGCTCTCCAGGCTGATCGTGCCGGTGAACAGTTCCATCGCG
GTTACCGAGGCGATACCGCAACGGCTGGAGCGAATCGGCTGGACCGGCGGGGAAGCCATCACCGATTCCCAA
CTGATGGTGGACTACTACCGCACCACCCGCGACGGGCGCATCGCCTTCGGCAAGGGCACCGGCGCCATCAGC
TACGGCTCGCGCATCGGCCGGGTATTCGACGTCGACCGGGAGAGCCTGGCCCTGACCGAGGCCGACTTCCGC
CGCACCTATCCCTCGCTAGGCGACATCCCGCTGGTCGACGGCTGGTCCGGCCCCATCGACCGTACCTACGAC
AGCCTGCCGGTCTTCGGCCACCTGCACGAGAACATCCACTACGGCATCGGCTGGAGCGGCAACGGCGTGGGA
CCGAGCCGCCTGGGCGGGCGGATCCTCGCCAGCCTCGCCCTCGGCCGCGACGACCCGTGGAGCCGTTGTCCG
CTGGTAGAACGCCGCTGCCGGAGCTTCCCCCCCGAGCCGCTGCGCTACCTGGGTGGCTCCCTGGTGCGCAAC
GCCGTCCTGCGCAAGGAACGCGCGGAACTCGCCGGTACCGCGCCCTCGGCCACCGACCGCTTTCTCGCGCGC
TTCGCCCCCGCCGGCCTTGAAGACAAATCCTGA