ViewGene
Locus Name:
GeneID:
Location:

GeneID:930
TrivialName: PA14_44210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44210
PAO1 Ortholog Locus:PA1567
Sequence Length:1398
Protein Length:465
Start: 3934120
Stop: 3935517
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04956.1|AE004585_4 (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 460/465 (98%), Positives = 461/465 (99%)
Sequence:
ATGACCTTCCGACCCTTCTGGCTGGACCAGGCCCTACGCTCCGAACATGCGGCCCCCTGCCCGCCGCTGGCC
GGCGATACCCGCGCCGACCTGTGCATCGTCGGCGGCGGCTACACTGGCCTGTGGACCGCCATCATGCTCAAG
GAGCACGATCCCGGGCTCGACGTGGTGCTGGTCGAGGCCGACCTCTGCGGCGCCGGCGCCAGCGGCCGCAAC
GGCGGCTGCGCGCTGTCCTGGTCGGCCAAGTTCTTCACCCTGGAACGGCTGTTCGGGCTCACCGAGGCGATC
CGCCTGGTCAAGGCCTCCGAGGACAGCATCCGGGCCATCGGCGCCTTCTGCCAGCGCTACGACGTCGAGGCC
GACTACCGGCTGGACGGCACCCTCTATACCGCCACCAACCCGGCCCAGGTCGGCAGCACCGACAGCGTGATC
GCCGCCCTGGAACGCCATGGCATCAACTCCTTCGTCAAGCGCCCGCTGGCCGACGTGCAACGCCTGGCCGGC
TCGCGCCGGCACCTGGAAGGCTGGTTCTCGCCGGCTGCCGCGACGGTGCAGCCAGGCAAGCTGGTTCGCGGC
CTGCGCCGGGTCGCCCTGCAACTGGGGGTACGCCTGTACGAAGGTACGCCGATGCGAGGACTGGAGCACGGC
CGCCCGGCGGAAGTGGTCACCCCCCACGGGCGGGTCGTCGCCGACCGCGTGGTGCTGGCGCTGAACGCCTGG
ATGGCGAGGGCCTTCCCGCAGTTCGAACGCAGCGTGGCGATCGTCTCCAGCGACATGCTCATCACCGAGCCA
CGACCGGACCTGCTGCAGGAGATCGGCCTGACCAGCGGGGTCAGCGTGCTCGACTCGCGGATCTTCGTGCAT
TACTACCACAACACCCCGGACGGCCGGCTGATGCTCGGCAAGGGCGGCAACACCTTCGCCTACGGCGGACGC
ATGCTGCCGGTGTTCGACCGCCCCTCACCGTATCTCGGGCAACTACGCGGCAGTTTGCGGGAGTTCTTCCCC
GAGTTCGCCGAGGTCGCCATCGAGGCCAGCTGGAACGGTCCATCGGATCGCTCGGTGACCGGCCTGCCGTTC
TTCGGCCGGCTCGACGGCCGCGACAATGTGTTCTATGGCTTCGGCTACTCCGGCAGCGGCGTCGGCCCATGC
CACATGGGCGGGCAGATCCTTTCTTCGCTGGCGCTCGGCCTGGACAATCCCTGGACCCGTTCGCCGCTGACC
CAGGGACCGCTCGGTCGCTTCCCGCCGGAGCCGATCCGCTATGTCGGTTCGCTGATGGTGCGCAACGCGATC
CGCCGCAAGGAGCGCGCCGAAGACGTCGGCCGGCGCCCGCGTCATCTCGACGTACGCCTGGCCAGGTTCGCC
GCCGCCGCGGGCAAGGCCGACAAGGGGTGA
Translation:
MTFRPFWLDQALRSEHAAPCPPLAGDTRADLCIVGGGYTGLWTAIMLKEHDPGLDVVLVEADLCGAGASGRN
GGCALSWSAKFFTLERLFGLTEAIRLVKASEDSIRAIGAFCQRYDVEADYRLDGTLYTATNPAQVGSTDSVI
AALERHGINSFVKRPLADVQRLAGSRRHLEGWFSPAAATVQPGKLVRGLRRVALQLGVRLYEGTPMRGLEHG
RPAEVVTPHGRVVADRVVLALNAWMARAFPQFERSVAIVSSDMLITEPRPDLLQEIGLTSGVSVLDSRIFVH
YYHNTPDGRLMLGKGGNTFAYGGRMLPVFDRPSPYLGQLRGSLREFFPEFAEVAIEASWNGPSDRSVTGLPF
FGRLDGRDNVFYGFGYSGSGVGPCHMGGQILSSLALGLDNPWTRSPLTQGPLGRFPPEPIRYVGSLMVRNAI
RRKERAEDVGRRPRHLDVRLARFAAAAGKADKG*
AnnotationID:939GeneID:930
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 12:12:36
Gene Name:
Confidence Code:3
GeneProduct:putative Glycine/D-amino acid oxidase
Cell Localization:()
Synonyms:PA1567
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO08530.1|AE016813_282 (AE016813) Glycine/D-amino acid oxidase [Vibrio vulnificus CMCP6]
          Length = 490

 Score =  486 bits (1252), Expect = e-136
 Identities = 247/460 (53%), Positives = 312/460 (67%), Gaps = 1/460 (0%)








 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues, 100.0% aligned
Score =  172 bits (436), Expect = 8e-44
Identities = 111/406 (27%), Positives = 160/406 (39%), Gaps = 28/406 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1863




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19005




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37282




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:930_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:930
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1646
                           PA1567_tr
                           translation of PA1567
                           465
                           98.92
                           99.13
                           0
                           2419.0
     

     
     
58989
                           gb|AAG04956.1|AE004585_4
                           (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           465
                           98.92
                           99.13
                           0
                           2419.0
     

     
     
58990
                           gb|AAN68158.1|AE016447_7
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           465
                           80.43
                           86.23
                           2
                           1950.0
     

     
     
58991
                           dbj|BAC61588.1|
                           (AP005084) hypothetical protein [Vibrio parahaemolyticus]
                           466
                           53.64
                           68.88
                           1
                           1296.0
     

     
     
58993
                           gb|AAO08530.1|AE016813_282
                           (AE016813) Glycine/D-amino acid oxidase [Vibrio vulnificus CMCP6]
                           490
                           50.40
                           63.87
                           25
                           1245.0
     

     






      

          
GC ORFID: 43932How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1567Glimmer Score: 

          
Start: 1019789Stop: 1018392

          
Length: 1398


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1567 translation of PA1567Homolog Bit Score 936.0

          
Other Homologs:  t_PA1918 (ORF: BLASTX 370.0), t_PA1567 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTTCCGACCCTTCTGGCTGGACCAGGCCCTACGCTCCGAACATGCGGCCCCCTGCCCGCCGCTGGCC 
GGCGATACCCGCGCCGACCTGTGCATCGTCGGCGGCGGCTACACTGGCCTGTGGACCGCCATCATGCTCAAG 
GAGCACGATCCCGGGCTCGACGTGGTGCTGGTCGAGGCCGACCTCTGCGGCGCCGGCGCCAGCGGCCGCAAC 
GGCGGCTGCGCGCTGTCCTGGTCGGCCAAGTTCTTCACCCTGGAACGGCTGTTCGGGCTCACCGAGGCGATC 
CGCCTGGTCAAGGCCTCCGAGGACAGCATCCGGGCCATCGGCGCCTTCTGCCAGCGCTACGACGTCGAGGCC 
GACTACCGGCTGGACGGCACCCTCTATACCGCCACCAACCCGGCCCAGGTCGGCAGCACCGACAGCGTGATC 
GCCGCCCTGGAACGCCATGGCATCAACTCCTTCGTCAAGCGCCCGCTGGCCGACGTGCAACGCCTGGCCGGC 
TCGCGCCGGCACCTGGAAGGCTGGTTCTCGCCGGCTGCCGCGACGGTGCAGCCAGGCAAGCTGGTTCGCGGC 
CTGCGCCGGGTCGCCCTGCAACTGGGGGTACGCCTGTACGAAGGTACGCCGATGCGAGGACTGGAGCACGGC 
CGCCCGGCGGAAGTGGTCACCCCCCACGGGCGGGTCGTCGCCGACCGCGTGGTGCTGGCGCTGAACGCCTGG 
ATGGCGAGGGCCTTCCCGCAGTTCGAACGCAGCGTGGCGATCGTCTCCAGCGACATGCTCATCACCGAGCCA 
CGACCGGACCTGCTGCAGGAGATCGGCCTGACCAGCGGGGTCAGCGTGCTCGACTCGCGGATCTTCGTGCAT 
TACTACCACAACACCCCGGACGGCCGGCTGATGCTCGGCAAGGGCGGCAACACCTTCGCCTACGGCGGACGC 
ATGCTGCCGGTGTTCGACCGCCCCTCACCGTATCTCGGGCAACTACGCGGCAGTTTGCGGGAGTTCTTCCCC 
GAGTTCGCCGAGGTCGCCATCGAGGCCAGCTGGAACGGTCCATCGGATCGCTCGGTGACCGGCCTGCCGTTC 
TTCGGCCGGCTCGACGGCCGCGACAATGTGTTCTATGGCTTCGGCTACTCCGGCAGCGGCGTCGGCCCATGC 
CACATGGGCGGGCAGATCCTTTCTTCGCTGGCGCTCGGCCTGGACAATCCCTGGACCCGTTCGCCGCTGACC 
CAGGGACCGCTCGGTCGCTTCCCGCCGGAGCCGATCCGCTATGTCGGTTCGCTGATGGTGCGCAACGCGATC 
CGCCGCAAGGAGCGCGCCGAAGACGTCGGCCGGCGCCCGCGTCATCTCGACGTACGCCTGGCCAGGTTCGCC 
GCCGCCGCGGGCAAGGCCGACAAGGGGTGA