ViewGene

Locus Name:
GeneID:
Location:

GeneID: 93

TrivialName: PA14_07430

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_07430

PAO1 Ortholog Locus: PA0572

Sequence Length: 2772

Protein Length: 923

Start: 637740

Stop: 634969

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03961.1|AE004493_6 (AE004493) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 916/923 (99%), Positives = 917/923 (99%)

Sequence:

GTGAGCTTGTCCACCACTGCATTTCCCTCACTGCAAGGAGAGAACATGAGTCGCTCACCCATCCCTCGCCAC
CGAGCGTTGCTGGCCGGTTTCTGCCTGGCTGGCGCGCTGTCCGCCCAGGCGGCCACCCAGGAAGAAATCCTC
GATGCGGCACTGGTCAGCGGGGATTCCTCGCAACTGACCGACAGCCACCTGGTCGCCCTCCGCCTGCAGCAG
CAGGTCGAGCGCATCCGCCAGACCCGCACGCAGTTGCTCGACGGTCTCTACCAGAACCTCAGCCAAGCCTAT
GATCCTGGCGCCGCCAGCATGTGGGTCCTGCCGGCCAACCCGGACAATACCCTGCCCTTCCTCATCGGCGAC
AAGGGGCGCGTGCTCGCCAGCCTGAGCCTGGAGGCCGGCGGCCGCGGGCTGGCCTATGGCACCAACGTGCTC
ACCCAACTGAGCGGGGCCAATGCCGCCCACGCGCCGCTGCTGAAGCGGGCGGTGCAGTGGCTGGTGAACGGC
GACCCGGGCGCGGCCACTGCGAAGGACTTCAAGGTCAGCGTGGTCGGGGTGGACAAGACCGCCACCCTCAAC
GGCCTGAAGAGCGCCGGCCTGCAACCGGCGGACGCCGCCTGCAACGCGCTGACCGACGCCAGTTGCGCCAGC
ACCAGCAAATTGCTGGTACTGGGCAACGGCGCCAGCGCCGCTAGCCTGAGCGCCACGGTGCGCGCACGGCTA
CAGGCCGGGCTGCCGATCCTCTTCGTGCACACCAATGGCTGGAACCAGAGCAGCACCGGCCAGCAGATCCTC
GCCGGCCTGGGCCTGCAGGAAGGCCCCTACGGCGGCAACTACTGGGACAAGGACACGGTGCCATCCAGCCGC
ACCCGGACGCGTTCGGTCGAGTTGGGCGGCGCCTATGGCCAGGACCCGGCGCTGGTGCAGCAGATCGTCGAC
GGTAGCTGGCGCACGGACTACGACTGGTCGAAATGCACCTCCTACGTCGGTCGCACCACCTGCGACGACGTG
CCGGGACTGAGCGACTTCAGCAAGCGCGTCGATGTATTGAAAGGCGCCCTCGACGCCTACAACCAGAAGGCG
CAGAACCTCTTCGCCCTGCCCGGCACCACCTCGCTGCGGCTCTGGCTGCTGTGGGCCGACGCGGTGCGGCAG
AACATCCGCTACCCGATGGACAAGGCCGCCGACACGGCGCGCTTCCAGGAAAccttCGTCGCCGACGCCATC
GTCGGCTACGTGCGCGAGGCCGGCGCGGCGCAGAAGGAACTGGGCAGCTACGCCGGCCAGCGCCAACAGTCG
ATGCCGGTATCGGGCTCGGAGGAAACCCTGACCCTCACCTTGCCGTCGGCCcAGGGCTTCACCGCCATCGGC
CGCATGGCGGCGCCGGGCAAGCGCCTGAGCATCCGCATCGAAGACGCTGGCCAGGCCAGCCTGGCGGTCGGC
CTGAACACCCAGCGCATCGGCTCGACGCGGCTGTGGAATACCCGCCAGTATGACCGCCCGCGCTTCCTCAAG
AGCCCGGACATCAAGCTCCAGGCAAACCAGTCGGTGGCGCTGGTATCGCCCTACGGCGGCCTGTTGCAACTG
GTCTACAGCGGCGCCACGCCGGGTCAGACGGTAACCGTCAAGGTAACCGGCGCGGCCAGCCAGCCGTTCCTC
GACATCCAGCCGGGCGAGGACAGCAGCCAGGCGATTGCCGACTTCATCCAGGCGCTGGACGCCGACAAGGCC
GACTGGCTGGAGATCCGCAGCGGCTCGGTGGAGGTCCACGCCAAGGTGGAGAAGGTCCGTGGCTCGATCGAC
AAGGACTATGGCGGCGACGTCCAGCGCTTCATCCGTGAGTTGAACGAGGTGTTCATCGACGACGCCTACACC
CTGGCCGGCTTCGCCATTCCCAACCAGGCGAAGACTCCGGCAATCCAGCAGGAATGCGCGGTGCGCGGCTGG
GACTGCGACAGCGAGACCCTGCACAAGCTGCCCGGCACCCAGCACATCAACGTCGACCAGTACGCCCAGTGC
GGCGGCGGTTGCAGCGGCAACCCCTACGACCAGACCTGGGGCCTGAACCCGCGTGGCTGGGGCGAAAGCCAT
GAGCTGGGCCACAACCTGCAAGTGAATCGACTGAAGGTCTACGGCGGGCGCTCGGGCGAAATCTCCAACCAG
ATATTCCCGTTGCACAAGGACTGGCGCGTGCTCCGCGAGTTCGGGCAGAACCTCGACGATACGCGGGTCAAC
TACCGCAACGCCTACAACCTGATCGTCGCCGGGCGCGCCGAGGCCGATCCGCTGGCAGGCGTATACAAGCGC
CTGTGGGAAGACCCGGGCACCTACGCGCTGAACGGCGAGCGAATGGCCTTCTATACCCAGTGGGTGCACTAC
TGGGCCGACCTGAAGAACGATCCGCTGCAGGGTTGGGATATCTGGACCCTGCTCTACCTGCACCAGCGCCAG
GTGGACAAGTCCGACTGGGACGCCAGCAAGGCCGCTCTCGGCTACGGCACCTACGCCCAGCGCCCGGGAAAC
AGCGGCGATGCCAGCAGCACGGACGGCAACGACAACCTGTTGCTCGGCCTGTCCTGGCTGACCCAGCGCGAC
CAGCGGCCAACCTTCGCGCTATGGGGCATCCGTACCTCGGCAGCGGCCCAGGCGCAGGTGGCGGCCTACAGT
TTCGCCGAGCAGCCGGCGTTCTTCTATGCCAACAACCGGACCAACGAATACAGCACGGTGAAGCTTCTGGAC
ATGAGCCAGGGGTCGCCGACGTGGCCGTTTCCGTGA

Translation:

MSLSTTAFPSLQGENMSRSPIPRHRALLAGFCLAGALSAQAATQEEILDAALVSGDSSQLTDSHLVALRLQQ
QVERIRQTRTQLLDGLYQNLSQAYDPGAASMWVLPANPDNTLPFLIGDKGRVLASLSLEAGGRGLAYGTNVL
TQLSGANAAHAPLLKRAVQWLVNGDPGAATAKDFKVSVVGVDKTATLNGLKSAGLQPADAACNALTDASCAS
TSKLLVLGNGASAASLSATVRARLQAGLPILFVHTNGWNQSSTGQQILAGLGLQEGPYGGNYWDKDTVPSSR
TRTRSVELGGAYGQDPALVQQIVDGSWRTDYDWSKCTSYVGRTTCDDVPGLSDFSKRVDVLKGALDAYNQKA
QNLFALPGTTSLRLWLLWADAVRQNIRYPMDKAADTARFQETFVADAIVGYVREAGAAQKELGSYAGQRQQS
MPVSGSEETLTLTLPSAQGFTAIGRMAAPGKRLSIRIEDAGQASLAVGLNTQRIGSTRLWNTRQYDRPRFLK
SPDIKLQANQSVALVSPYGGLLQLVYSGATPGQTVTVKVTGAASQPFLDIQPGEDSSQAIADFIQALDADKA
DWLEIRSGSVEVHAKVEKVRGSIDKDYGGDVQRFIRELNEVFIDDAYTLAGFAIPNQAKTPAIQQECAVRGW
DCDSETLHKLPGTQHINVDQYAQCGGGCSGNPYDQTWGLNPRGWGESHELGHNLQVNRLKVYGGRSGEISNQ
IFPLHKDWRVLREFGQNLDDTRVNYRNAYNLIVAGRAEADPLAGVYKRLWEDPGTYALNGERMAFYTQWVHY
WADLKNDPLQGWDIWTLLYLHQRQVDKSDWDASKAALGYGTYAQRPGNSGDASSTDGNDNLLLGLSWLTQRD
QRPTFALWGIRTSAAAQAQVAAYSFAEQPAFFYANNRTNEYSTVKLLDMSQGSPTWPFP*

AnnotationID:103 GeneID:93

AnnotatorUID: diggins

Modification Date/Time: 2005-03-29 08:08:05

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0572

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:14051

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17331

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:93

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

177 PA0572_tr translation of PA0572 923 99.24 99.34 0 4793.0

14338 gb|AAG03961.1|AE004493_6 (AE004493) hypothetical protein PA0572 [Pseudomonas aeruginosa PAO1] 923 99.13 99.34 0 4790.0

GC ORFID: `43095`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0572`	Glimmer Score:
Start: `6439083`	Stop: `6436312`
Length: `2772`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0572 translation of PA0572`	Homolog Bit Score `1850.0`
Other Homologs: `t_PA0572 (ORF: GLIMMER)`
GC ORF Sequence
GTGAGCTTGTCCACCACTGCATTTCCCTCACTGCAAGGAGAGAACATGAGTCGCTCACCCATCCCTCGCCAC CGAGCGTTGCTGGCCGGTTTCTGCCTGGCTGGCGCGCTGTCCGCCCAGGCGGCCACCCAGGAAGAAATCCTC GATGCGGCACTGGTCAGCGGGGATTCCTCGCAACTGACCGACAGCCACCTGGTCGCCCTCCGCCTGCAGCAG CAGGTCGAGCGCATCCGCCAGACCCGCACGCAGTTGCTCGACGGTCTCTACCAGAACCTCAGCCAAGCCTAT GATCCTGGCGCCGCCAGCATGTGGGTCCTGCCGGCCAACCCGGACAATACCCTGCCCTTCCTCATCGGCGAC AAGGGGCGCGTGCTCGCCAGCCTGAGCCTGGAGGCCGGCGGCCGCGGGCTGGCCTATGGCACCAACGTGCTC ACCCAACTGAGCGGGGCCAATGCCGCCCACGCGCCGCTGCTGAAGCGGGCGGTGCAGTGGCTGGTGAACGGC GACCCGGGCGCGGCCACTGCGAAGGACTTCAAGGTCAGCGTGGTCGGGGTGGACAAGACCGCCACCCTCAAC GGCCTGAAGAGCGCCGGCCTGCAACCGGCGGACGCCGCCTGCAACGCGCTGACCGACGCCAGTTGCGCCAGC ACCAGCAAATTGCTGGTACTGGGCAACGGCGCCAGCGCCGCTAGCCTGAGCGCCACGGTGCGCGCACGGCTA CAGGCCGGGCTGCCGATCCTCTTCGTGCACACCAATGGCTGGAACCAGAGCAGCACCGGCCAGCAGATCCTC GCCGGCCTGGGCCTGCAGGAAGGCCCCTACGGCGGCAACTACTGGGACAAGGACACGGTGCCATCCAGCCGC ACCCGGACGCGTTCGGTCGAGTTGGGCGGCGCCTATGGCCAGGACCCGGCGCTGGTGCAGCAGATCGTCGAC GGTAGCTGGCGCACGGACTACGACTGGTCGAAATGCACCTCCTACGTCGGTCGCACCACCTGCGACGACGTG CCGGGACTGAGCGACTTCAGCAAGCGCGTCGATGTATTGAAAGGCGCCCTCGACGCCTACAACCAGAAGGCG CAGAACCTCTTCGCCCTGCCCGGCACCACCTCGCTGCGGCTCTGGCTGCTGTGGGCCGACGCGGTGCGGCAG AACATCCGCTACCCGATGGACAAGGCCGCCGACACGGCGCGCTTCCAGGAAAccttCGTCGCCGACGCCATC GTCGGCTACGTGCGCGAGGCCGGCGCGGCGCAGAAGGAACTGGGCAGCTACGCCGGCCAGCGCCAACAGTCG ATGCCGGTATCGGGCTCGGAGGAAACCCTGACCCTCACCTTGCCGTCGGCCcAGGGCTTCACCGCCATCGGC CGCATGGCGGCGCCGGGCAAGCGCCTGAGCATCCGCATCGAAGACGCTGGCCAGGCCAGCCTGGCGGTCGGC CTGAACACCCAGCGCATCGGCTCGACGCGGCTGTGGAATACCCGCCAGTATGACCGCCCGCGCTTCCTCAAG AGCCCGGACATCAAGCTCCAGGCAAACCAGTCGGTGGCGCTGGTATCGCCCTACGGCGGCCTGTTGCAACTG GTCTACAGCGGCGCCACGCCGGGTCAGACGGTAACCGTCAAGGTAACCGGCGCGGCCAGCCAGCCGTTCCTC GACATCCAGCCGGGCGAGGACAGCAGCCAGGCGATTGCCGACTTCATCCAGGCGCTGGACGCCGACAAGGCC GACTGGCTGGAGATCCGCAGCGGCTCGGTGGAGGTCCACGCCAAGGTGGAGAAGGTCCGTGGCTCGATCGAC AAGGACTATGGCGGCGACGTCCAGCGCTTCATCCGTGAGTTGAACGAGGTGTTCATCGACGACGCCTACACC CTGGCCGGCTTCGCCATTCCCAACCAGGCGAAGACTCCGGCAATCCAGCAGGAATGCGCGGTGCGCGGCTGG GACTGCGACAGCGAGACCCTGCACAAGCTGCCCGGCACCCAGCACATCAACGTCGACCAGTACGCCCAGTGC GGCGGCGGTTGCAGCGGCAACCCCTACGACCAGACCTGGGGCCTGAACCCGCGTGGCTGGGGCGAAAGCCAT GAGCTGGGCCACAACCTGCAAGTGAATCGACTGAAGGTCTACGGCGGGCGCTCGGGCGAAATCTCCAACCAG ATATTCCCGTTGCACAAGGACTGGCGCGTGCTCCGCGAGTTCGGGCAGAACCTCGACGATACGCGGGTCAAC TACCGCAACGCCTACAACCTGATCGTCGCCGGGCGCGCCGAGGCCGATCCGCTGGCAGGCGTATACAAGCGC CTGTGGGAAGACCCGGGCACCTACGCGCTGAACGGCGAGCGAATGGCCTTCTATACCCAGTGGGTGCACTAC TGGGCCGACCTGAAGAACGATCCGCTGCAGGGTTGGGATATCTGGACCCTGCTCTACCTGCACCAGCGCCAG GTGGACAAGTCCGACTGGGACGCCAGCAAGGCCGCTCTCGGCTACGGCACCTACGCCCAGCGCCCGGGAAAC AGCGGCGATGCCAGCAGCACGGACGGCAACGACAACCTGTTGCTCGGCCTGTCCTGGCTGACCCAGCGCGAC CAGCGGCCAACCTTCGCGCTATGGGGCATCCGTACCTCGGCAGCGGCCCAGGCGCAGGTGGCGGCCTACAGT TTCGCCGAGCAGCCGGCGTTCTTCTATGCCAACAACCGGACCAACGAATACAGCACGGTGAAGCTTCTGGAC ATGAGCCAGGGGTCGCCGACGTGGCCGTTTCCGTGA