ViewGene

Locus Name:
GeneID:
Location:

GeneID: 929

TrivialName: PA14_45400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_45400

PAO1 Ortholog Locus: PA1474

Sequence Length: 1479

Protein Length: 492

Start: 4042922

Stop: 4044400

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04863.1|AE004576_12 (AE004576) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 488/492 (99%), Positives = 490/492 (99%)

Sequence:

ATGACCCTGAAGCTGGTGCAGACCCTGGCCGGCCTGCTGGGCGAAGGCGAGTCGGGCAAGGCCGAGGTGCTG
GCGGTCAAGGAAGGCCTGGCGAACAATTTCCAGGTCCTGCTCAAGCTGACCCTGGCGAACAGCGGGCAGAGC
CTGGTGGAAGTGCAGAGCAACCGGCCGCTGGTGCCGGGCAACCTGCTCAACGTCAGCGCCACCAGCAGCGCC
AGCGTGGTTGCCACCCTGCTCGACAGCATGGCCGGCGCTGGCCCGCTGAGCAGCCTCGACCTGGAGCAACTG
CCGCCCGGCACCCTGCTCCAGGGCAAGGTCCTGTCCAGCACCGCGCTGCCGGCGGACAAGGCCCAGCAGATG
GTCTACCGGGTCCTGCTGAACCTGCTCAACACGCCGCTCGCCGGCAGCAAGCTGAGCCTCGACTCGCCCCAG
GCGCTGCCGGTCGGCAGCCTGCTCACGGCGCTGGTGAAAAACAGCCAGCAGATCGACTTCCTGCCGCTCAGC
GGACGCCTCGACCAGCTTGCGCTGGGCCAGCAACTGGCCGGGCAGAGCGCCCGCCAGGCTTCCCTGGAAGGC
CTGTTCGCCGCCCTGCAGGGGCTGAACGGCCGCAACGACCTGCCGGACAGCCTGCGCCAGGCCGTGGAGCGC
CTCTTCGCCGGCCTGCCGGAGGCGCAGAAGATGGGCGATTCCAAGCTGCTCGGCCAGGCCCTGCAGCAGAGC
GGCCTGTTCCTCGAGGCGCGCCTGATGCAGGGCGCCACCGATCATCTCGGCCAGGACCTGAAGGCCAACCTG
TTGCGCCTGTTCGCCCAGCTGTCGCCGCTGCCGCCGACCGGCGCCCAGGCGCCGGGCATGTTCGCCGGCAAC
ACGGCGAACCTGGCCCAGGCGCTGCCGGCCTTTGTCCGCAACGCCCTGGGCAACCTGGGACAGAGCGCCAAC
AAGACCCAGGCACTGAACTTTCCCCTGCCGAGCAAGGTTCTCCAGCTGTTCGACGAGGACATGGAACTGGAG
TCGCTGCTGCGCCTTGCCGCCGCGGCGATCTCCCGCCTGCAGACCCATCAGTTGTCGAGCCTGGCGCAGACC
AGCACCCTGCCGGATGGCACCCAGCTGGCGACCTGGCAGATGGAGGTGCCCATGCGCCATCAGCACTCGGTG
GTGCCGTTGCAGGTGAAGTTCCAGGAAGAACAGCGCAAGACCGGCGAAGAGGCCCGCGAAAGCCTCTGGCGC
GTCGAACTGGCCTTCGACCTGGAGCCGCTGGGACCGCTGCACGCCCAGGCGACCCTGCTGCGCGGCAGCTTG
TCCAGCCAGCTTTGGGCCGAGCGCGACGCGACCGCGCGGCTGGTCGAGCATGAACTCGGCCACCTGCGCCAA
CGCCTGCGCGACGCCGGTCTGACCGTTGGCGAGATCACCTGCCAACGCGGCCGCCCACCCCAGGGCCCGCGA
GCGACCATCGAACAACGCTGGGTAGACGAAACCGCATGA

Translation:

MTLKLVQTLAGLLGEGESGKAEVLAVKEGLANNFQVLLKLTLANSGQSLVEVQSNRPLVPGNLLNVSATSSA
SVVATLLDSMAGAGPLSSLDLEQLPPGTLLQGKVLSSTALPADKAQQMVYRVLLNLLNTPLAGSKLSLDSPQ
ALPVGSLLTALVKNSQQIDFLPLSGRLDQLALGQQLAGQSARQASLEGLFAALQGLNGRNDLPDSLRQAVER
LFAGLPEAQKMGDSKLLGQALQQSGLFLEARLMQGATDHLGQDLKANLLRLFAQLSPLPPTGAQAPGMFAGN
TANLAQALPAFVRNALGNLGQSANKTQALNFPLPSKVLQLFDEDMELESLLRLAAAAISRLQTHQLSSLAQT
STLPDGTQLATWQMEVPMRHQHSVVPLQVKFQEEQRKTGEEARESLWRVELAFDLEPLGPLHAQATLLRGSL
SSQLWAERDATARLVEHELGHLRQRLRDAGLTVGEITCQRGRPPQGPRATIEQRWVDETA*

AnnotationID:938 GeneID:929

AnnotatorUID: diggins

Modification Date/Time: 2005-02-24 13:01:04

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1474

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:1861

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19003

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:929

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1645 PA1474_tr translation of PA1474 492 99.18 99.59 0 2418.0

58986 gb|AAG04863.1|AE004576_12 (AE004576) hypothetical protein PA1474 [Pseudomonas aeruginosa PAO1] 492 99.18 99.59 0 2418.0

58987 gb|AAN69907.1|AE016629_9 (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440] 525 46.47 62.85 40 1132.0

58988 gb|AAO57107.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 503 26.04 32.20 277 646.0

GC ORFID: `43931`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1474`	Glimmer Score:
Start: `910987`	Stop: `909509`
Length: `1479`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1474 translation of PA1474`	Homolog Bit Score `936.0`
Other Homologs: `psyr_15may02_Scaffold13_revised_gene2146 (ORF: BLASTX 424.0), t_PA1474 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCCTGAAGCTGGTGCAGACCCTGGCCGGCCTGCTGGGCGAAGGCGAGTCGGGCAAGGCCGAGGTGCTG GCGGTCAAGGAAGGCCTGGCGAACAATTTCCAGGTCCTGCTCAAGCTGACCCTGGCGAACAGCGGGCAGAGC CTGGTGGAAGTGCAGAGCAACCGGCCGCTGGTGCCGGGCAACCTGCTCAACGTCAGCGCCACCAGCAGCGCC AGCGTGGTTGCCACCCTGCTCGACAGCATGGCCGGCGCTGGCCCGCTGAGCAGCCTCGACCTGGAGCAACTG CCGCCCGGCACCCTGCTCCAGGGCAAGGTCCTGTCCAGCACCGCGCTGCCGGCGGACAAGGCCCAGCAGATG GTCTACCGGGTCCTGCTGAACCTGCTCAACACGCCGCTCGCCGGCAGCAAGCTGAGCCTCGACTCGCCCCAG GCGCTGCCGGTCGGCAGCCTGCTCACGGCGCTGGTGAAAAACAGCCAGCAGATCGACTTCCTGCCGCTCAGC GGACGCCTCGACCAGCTTGCGCTGGGCCAGCAACTGGCCGGGCAGAGCGCCCGCCAGGCTTCCCTGGAAGGC CTGTTCGCCGCCCTGCAGGGGCTGAACGGCCGCAACGACCTGCCGGACAGCCTGCGCCAGGCCGTGGAGCGC CTCTTCGCCGGCCTGCCGGAGGCGCAGAAGATGGGCGATTCCAAGCTGCTCGGCCAGGCCCTGCAGCAGAGC GGCCTGTTCCTCGAGGCGCGCCTGATGCAGGGCGCCACCGATCATCTCGGCCAGGACCTGAAGGCCAACCTG TTGCGCCTGTTCGCCCAGCTGTCGCCGCTGCCGCCGACCGGCGCCCAGGCGCCGGGCATGTTCGCCGGCAAC ACGGCGAACCTGGCCCAGGCGCTGCCGGCCTTTGTCCGCAACGCCCTGGGCAACCTGGGACAGAGCGCCAAC AAGACCCAGGCACTGAACTTTCCCCTGCCGAGCAAGGTTCTCCAGCTGTTCGACGAGGACATGGAACTGGAG TCGCTGCTGCGCCTTGCCGCCGCGGCGATCTCCCGCCTGCAGACCCATCAGTTGTCGAGCCTGGCGCAGACC AGCACCCTGCCGGATGGCACCCAGCTGGCGACCTGGCAGATGGAGGTGCCCATGCGCCATCAGCACTCGGTG GTGCCGTTGCAGGTGAAGTTCCAGGAAGAACAGCGCAAGACCGGCGAAGAGGCCCGCGAAAGCCTCTGGCGC GTCGAACTGGCCTTCGACCTGGAGCCGCTGGGACCGCTGCACGCCCAGGCGACCCTGCTGCGCGGCAGCTTG TCCAGCCAGCTTTGGGCCGAGCGCGACGCGACCGCGCGGCTGGTCGAGCATGAACTCGGCCACCTGCGCCAA CGCCTGCGCGACGCCGGTCTGACCGTTGGCGAGATCACCTGCCAACGCGGCCGCCCACCCCAGGGCCCGCGA GCGACCATCGAACAACGCTGGGTAGACGAAACCGCATGA