ViewGene
Locus Name:
GeneID:
Location:

GeneID:928
TrivialName: PA14_03480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03480
PAO1 Ortholog Locus:PA0268
Sequence Length:1422
Protein Length:473
Start: 319753
Stop: 318332
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03657.1|AE004465_3 (AE004465) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 471/473 (99%), Positives = 471/473 (99%)
Sequence:
ATGGAACTGCAACTGATCCTCGACGGCCGCCACGACCTGGTCGGCCAGCTCTATCGCCAGCTGCGCGACGCG
ATCCTCCACGGTCGCCTGGCCACCGGCGATCGCCTGCCAGCCACGCGCTACCTCGCCGAACGCCTGGAAGTG
TCGCGCAAGACCGTCAGCGAAGCCTACGAGCGCCTCACCAGCGAGGGCTTCCTCGAAGGCCGGGTCGGCAGC
GGCACCTTCGTCGCCCGCGGGCCCGCCGGGGAAGCGCCGCCGCAGCGCGCCGACGGTCCGTTGCGGCCGGCC
GCGCGCTGGGCACGCATCGAACCGCAGTCCGGTCTGATGGACCAGCGAGCACCGCTCCGCTACAGCTTCGCC
GGCGGCACGACCGACAAGCGCCGCTTTCCCTTCGATACCTGGCGTACCTGCGTGCTCCAGGCGCTACGCCTG
CAACAGCGCTCGCCGGCGTTCTACAAGGAAACCGAAGGCGACCCCGAACTGCGCCTGGCGATCTCCCGCTAC
CTGGCGATCAACCGCGCCGTGCAGTGCGACTGGAACGCCCTGATGGTCACCCAGGGCGCCCAGCAGGGACTC
GACCTGCTGGCCCGGGTGATGCTCGACCCCGGCGACCTGGCGGTGGTCGAGGAACCCGGTTATCCGCCGGCC
CGCGCCAGCCTGCTGGCCACCGGCGCCGAGGTACGCGGAGTGCCGGTGGACGCCGAGGGGCTGCGCGTCGAC
CTGCTGCCGGACAACGCCAAGCTGGTCTACGTCACCCCGTCGCACCAGTTCCCGCTGGGCATGCCGATGAGC
CTCGAGCGGCGCCTGCAGTTGCTGGACTGGGCGCAGCGCCACCGGGCGCTGATCATCGAGGACGACTACGAC
AGCGAGTACCGCTTCGACGGGCGTTCGCTGGAGTCGCTGCGCAGCCTCGACCGGAACGGCCAGGTGGCCTAC
CTCGGGACCTTTTCCAAGACCCTCTTCCCCGAGCTGCGCCTCGGCTACCTGCTGCCGCCGGCGAGCCTGCGC
GAAGCGGTGCTGGCGGCGCGCAAGCTGGTCGACCGGCACAGCGAGACCTTGCAGCAACGCGCCCTCGCGCTG
TTCATCCAGCGCGGCGACTTCGCCCGCCATACGCGCCGCCTGCAACGCGAATACGCCCAGCGTCGCCGGCGC
CTGCTGGAACGCCTGCACGGCGACCTGAGCCCCTGGCTCGAAGCGCTGCCGGCGGTGGCCGGGATCCACCTC
GCGGCGCGCTGTCGCGAACCGCTGGATGTGCTGCGCATCGCCCGTCATTTGCGCCAGCAAGGCCTGGAGGTC
GGCACCCTGCCGCCCTTCTACGCGGAAACCCCGGCACAGGCCGGCTTCCTCTTCGGCTTCGGCTGCATCGAA
CGGGACGACATCGACCCGGCGTTGGACCTGTTGCGCGCCGAGCTGCGGCGCTAG
Translation:
MELQLILDGRHDLVGQLYRQLRDAILHGRLATGDRLPATRYLAERLEVSRKTVSEAYERLTSEGFLEGRVGS
GTFVARGPAGEAPPQRADGPLRPAARWARIEPQSGLMDQRAPLRYSFAGGTTDKRRFPFDTWRTCVLQALRL
QQRSPAFYKETEGDPELRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPA
RASLLATGAEVRGVPVDAEGLRVDLLPDNAKLVYVTPSHQFPLGMPMSLERRLQLLDWAQRHRALIIEDDYD
SEYRFDGRSLESLRSLDRNGQVAYLGTFSKTLFPELRLGYLLPPASLREAVLAARKLVDRHSETLQQRALAL
FIQRGDFARHTRRLQREYAQRRRRLLERLHGDLSPWLEALPAVAGIHLAARCREPLDVLRIARHLRQQGLEV
GTLPPFYAETPAQAGFLFGFGCIERDDIDPALDLLRAELRR*
AnnotationID:937GeneID:928
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:06
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:PA0268
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1167
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69345.1|AE016572_1 (AE016788) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 477

 Score =  437 bits (1124), Expect = e-122
 Identities = 243/477 (50%), Positives = 309/477 (64%), Gaps = 6/477 (1%)








 
Structural Features:
COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain 
and an aminotransferase domain 
(MocR family) and their eukaryotic orthologs 
[Transcription / Amino acid transport and metabolism]
CD-Length = 459 residues,  98.3% aligned
Score =  374 bits (962), Expect = 1e-104
Identities = 189/468 (40%), Positives = 244/468 (52%), Gaps = 24/468 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1859




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19001




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33619




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:928_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:928
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1643
                           PA0268_tr
                           translation of PA0268
                           473
                           99.57
                           99.57
                           0
                           2421.0
     

     
     
58981
                           gb|AAG03657.1|AE004465_3
                           (AE004465) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           473
                           99.57
                           99.57
                           0
                           2421.0
     

     
     
58982
                           gb|AAN69345.1|AE016572_1
                           (AE016788) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           482
                           51.86
                           64.93
                           14
                           1135.0
     

     
     
1644
                           PA5431_tr
                           translation of PA5431
                           519
                           40.65
                           52.21
                           74
                           829.0
     

     
     
58983
                           gb|AAG08816.1|AE004955_10
                           (AE004955) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           519
                           40.65
                           52.21
                           74
                           829.0
     

     






      

          
GC ORFID: 43930How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0268Glimmer Score: 

          
Start: 6121094Stop: 6119673

          
Length: 1422


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0268 translation of PA0268Homolog Bit Score 937.0

          
Other Homologs:  t_PA0268 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACTGCAACTGATCCTCGACGGCCGCCACGACCTGGTCGGCCAGCTCTATCGCCAGCTGCGCGACGCG 
ATCCTCCACGGTCGCCTGGCCACCGGCGATCGCCTGCCAGCCACGCGCTACCTCGCCGAACGCCTGGAAGTG 
TCGCGCAAGACCGTCAGCGAAGCCTACGAGCGCCTCACCAGCGAGGGCTTCCTCGAAGGCCGGGTCGGCAGC 
GGCACCTTCGTCGCCCGCGGGCCCGCCGGGGAAGCGCCGCCGCAGCGCGCCGACGGTCCGTTGCGGCCGGCC 
GCGCGCTGGGCACGCATCGAACCGCAGTCCGGTCTGATGGACCAGCGAGCACCGCTCCGCTACAGCTTCGCC 
GGCGGCACGACCGACAAGCGCCGCTTTCCCTTCGATACCTGGCGTACCTGCGTGCTCCAGGCGCTACGCCTG 
CAACAGCGCTCGCCGGCGTTCTACAAGGAAACCGAAGGCGACCCCGAACTGCGCCTGGCGATCTCCCGCTAC 
CTGGCGATCAACCGCGCCGTGCAGTGCGACTGGAACGCCCTGATGGTCACCCAGGGCGCCCAGCAGGGACTC 
GACCTGCTGGCCCGGGTGATGCTCGACCCCGGCGACCTGGCGGTGGTCGAGGAACCCGGTTATCCGCCGGCC 
CGCGCCAGCCTGCTGGCCACCGGCGCCGAGGTACGCGGAGTGCCGGTGGACGCCGAGGGGCTGCGCGTCGAC 
CTGCTGCCGGACAACGCCAAGCTGGTCTACGTCACCCCGTCGCACCAGTTCCCGCTGGGCATGCCGATGAGC 
CTCGAGCGGCGCCTGCAGTTGCTGGACTGGGCGCAGCGCCACCGGGCGCTGATCATCGAGGACGACTACGAC 
AGCGAGTACCGCTTCGACGGGCGTTCGCTGGAGTCGCTGCGCAGCCTCGACCGGAACGGCCAGGTGGCCTAC 
CTCGGGACCTTTTCCAAGACCCTCTTCCCCGAGCTGCGCCTCGGCTACCTGCTGCCGCCGGCGAGCCTGCGC 
GAAGCGGTGCTGGCGGCGCGCAAGCTGGTCGACCGGCACAGCGAGACCTTGCAGCAACGCGCCCTCGCGCTG 
TTCATCCAGCGCGGCGACTTCGCCCGCCATACGCGCCGCCTGCAACGCGAATACGCCCAGCGTCGCCGGCGC 
CTGCTGGAACGCCTGCACGGCGACCTGAGCCCCTGGCTCGAAGCGCTGCCGGCGGTGGCCGGGATCCACCTC 
GCGGCGCGCTGTCGCGAACCGCTGGATGTGCTGCGCATCGCCCGTCATTTGCGCCAGCAAGGCCTGGAGGTC 
GGCACCCTGCCGCCCTTCTACGCGGAAACCCCGGCACAGGCCGGCTTCCTCTTCGGCTTCGGCTGCATCGAA 
CGGGACGACATCGACCCGGCGTTGGACCTGTTGCGCGCCGAGCTGCGGCGCTAG