ViewGene

Locus Name:
GeneID:
Location:

GeneID:927
TrivialName: PA14_58070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58070
PAO1 Ortholog Locus:PA4474
Sequence Length:1443
Protein Length:480
Start: 5167488
Stop: 5166046
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07862.1|AE004861_3 (AE004861) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 479/480 (99%), Positives = 479/480 (99%)
Sequence:
ATGAGCGAGTTGTTGTCATCCGTCAGCCAGCAATTGCTGGCCCCCGGTGGTCTGGAACTGGACAGCCTGCCC
GGCATTCTTCATGAACTGAACGGCCCGGGCATCGATGCCGCCGACCTGTATTTCCAGAGCCAGGTCTCCGAG
TCGTGGATGCTCGAGGACGGCATCGTCAAGGAAGGCAGCTTCAATCTCGACCAGGGTGTCGGGGTACGCGCG
CAGTCGGGCGAGAAGACCGGCTTCGCCTATAGCAATGCGATCACCGCCGAGGCGTTGAAACAGGCCGCGGTG
GCGGCCCGTTCGATTTCCCGTGCGGGACAGAACGGCAGCGTGCAGGCGTTCAAGGCCGTGGCGCCGGCTCGC
CTGTACGCCGGCGAGAACCCGCTGGACGTGCTCAGCCGCGCCGAGAAGGTCGAGTTGCTGAAGCAGATCGAC
GCCGCTACCCGTGCGCTCGATCCCCGCATCCAGCAGGTCACGGTGAGCATGGCCGGCGTCTGGGAGCAGATC
CTGGTAGCGGCCAGCGACGGTTCGCTGGCCGCCGACATTCGTCCGCTGGTGCGTTTCAACGTCAGCGTGATC
GTCGAACAGAACGGCCGACGCGAACGCGGCGGCCACGGCGGCGGCGGTCGCACCGACTATCGCTATTTCCTC
CAGGAGGATCGCGCCATGGGCTACGCCCGCGAGGCCCTGCGCCAGGCGCTGGTCAACCTCGAGGCGATCCCC
GCGCCGGCCGGCACCCTGCCGGTGGTGATGGGCGCGGGTTGGTCCGGGGTCCTGCTCCACGAAGCGGTCGGC
CACGGCCTGGAGGGCGACTTCAACCGCAAGGGCAGCTCCGCCTACAGCGGCCGGGTCGGCGAAAAGGTCGCC
TCGAGCCTGTGCACCATCGTCGACGACGGCACCCTGGCCGGGCGTCGCGGCTCGCTGAGCGTGGATGACGAA
GGCACGCCGAGCAACTGCAACGTGCTGATCGAGAACGGCGTGCTCAAGGGCTACATGCAGGACAAGCTCAAC
GCCCGCCTGATGGGCGTGGCGCGCACCGGTAACGGCCGCCGCGAGTCCTACGCGCACCTGCCGATGCCACGC
ATGACCAACACCTACATGCTGGCCGGCGAGAGCGATCCGCAGGAAATCATCGCCTCGGTGGAGAAGGGTATC
TACTGCGCCAACCTCGGCGGTGGCCAGGTCGATATCACCAGCGGCAAGTTCGTGTTCTCCACCAGCGAGGCC
TACCTGATCGAGAACGGCAGGATCACCACCCCGGTGAAAGGCGCCACCCTGATCGGCAACGGTCCGGAAGCG
ATGAGCCGGGTGTCCATGGTCGGCAACGACCTGGCCCTGGACAGTGGCGTGGGAACCTGCGGGAAGGACGGT
CAGTCGGTGCCGGTCGGCGTCGGCCAGCCGACCCTGAAGATCGATGCGATCACCGTCGGCGGCACCGGCGCC
TGA
Translation:
MSELLSSVSQQLLAPGGLELDSLPGILHELNGPGIDAADLYFQSQVSESWMLEDGIVKEGSFNLDQGVGVRA
QSGEKTGFAYSNAITAEALKQAAVAARSISRAGQNGSVQAFKAVAPARLYAGENPLDVLSRAEKVELLKQID
AATRALDPRIQQVTVSMAGVWEQILVAASDGSLAADIRPLVRFNVSVIVEQNGRRERGGHGGGGRTDYRYFL
QEDRAMGYAREALRQALVNLEAIPAPAGTLPVVMGAGWSGVLLHEAVGHGLEGDFNRKGSSAYSGRVGEKVA
SSLCTIVDDGTLAGRRGSLSVDDEGTPSNCNVLIENGVLKGYMQDKLNARLMGVARTGNGRRESYAHLPMPR
MTNTYMLAGESDPQEIIASVEKGIYCANLGGGQVDITSGKFVFSTSEAYLIENGRITTPVKGATLIGNGPEA
MSRVSMVGNDLALDSGVGTCGKDGQSVPVGVGQPTLKIDAITVGGTGA*
AnnotationID:936GeneID:927
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 09:09:34
Gene Name:
Confidence Code:3
GeneProduct:putative tldD protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0312,pfam01523
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66565.1|AE016285_3 (AE016777) tldD protein [Pseudomonas putida KT2440]
          Length = 479

 Score =  835 bits (2156), Expect = 0.0
 Identities = 421/480 (87%), Positives = 451/480 (93%), Gaps = 1/480 (0%)

>gb|AAO57914.1| (AE016872) tldD protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 479

 Score =  834 bits (2155), Expect = 0.0
 Identities = 421/475 (88%), Positives = 447/475 (94%)

>emb|CAC93142.1| (AJ414158) putative modulator of DNA gyrase [Yersinia pestis CO92]
          Length = 481

 Score =  637 bits (1642), Expect = 0.0
 Identities = 324/478 (67%), Positives = 382/478 (79%), Gaps = 4/478 (0%)
Structural Features:
COG0312, TldD, Predicted Zn-dependent proteases and their 
inactivated homologs 
CD-Length = 454 residues,  98.5% aligned
Score =  423 bits (1088), Expect = 5e-119
Identities = 201/458 (43%), Positives = 266/458 (58%), Gaps = 16/458 (3%)

pfam01523, PmbA_TldD, Putative modulator of DNA gyrase. 
CD-Length = 297 residues, 100.0% aligned
Score =  244 bits (624), Expect = 3e-65
Identities = 112/297 (37%), Positives = 158/297 (53%), Gaps = 2/297 (0%)
Genomic Context:
Comment:
ReferenceID:1857
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18999
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31512
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:927_cdd.html
URL:
Homologs By Global Alignment
Gene ID:927

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1642 PA4474_tr translation of PA4474 480 99.79 99.79 0 2423.0
58926 gb|AAG07862.1|AE004861_3 (AE004861) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 480 99.79 99.79 0 2423.0
58928 gb|AAO57914.1| (AE016872) tldD protein [Pseudomonas syringae pv. tomato str. DC3000] 480 88.12 93.75 1 2154.0
58927 gb|AAN66565.1|AE016285_3 (AE016777) tldD protein [Pseudomonas putida KT2440] 480 87.70 93.95 1 2158.0
58934 emb|CAC93142.1| (AJ414158) putative modulator of DNA gyrase [Yersinia pestis CO92] 484 67.35 79.33 7 1644.0
GC ORFID: 43929How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4474Glimmer Score:
Start: 4431167Stop: 4429725
Length: 1443
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4474 translation of PA4474Homolog Bit Score 937.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5512 (ORF: BLASTX 836.0), t_PA4474 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGAGTTGTTGTCATCCGTCAGCCAGCAATTGCTGGCCCCCGGTGGTCTGGAACTGGACAGCCTGCCC
GGCATTCTTCATGAACTGAACGGCCCGGGCATCGATGCCGCCGACCTGTATTTCCAGAGCCAGGTCTCCGAG
TCGTGGATGCTCGAGGACGGCATCGTCAAGGAAGGCAGCTTCAATCTCGACCAGGGTGTCGGGGTACGCGCG
CAGTCGGGCGAGAAGACCGGCTTCGCCTATAGCAATGCGATCACCGCCGAGGCGTTGAAACAGGCCGCGGTG
GCGGCCCGTTCGATTTCCCGTGCGGGACAGAACGGCAGCGTGCAGGCGTTCAAGGCCGTGGCGCCGGCTCGC
CTGTACGCCGGCGAGAACCCGCTGGACGTGCTCAGCCGCGCCGAGAAGGTCGAGTTGCTGAAGCAGATCGAC
GCCGCTACCCGTGCGCTCGATCCCCGCATCCAGCAGGTCACGGTGAGCATGGCCGGCGTCTGGGAGCAGATC
CTGGTAGCGGCCAGCGACGGTTCGCTGGCCGCCGACATTCGTCCGCTGGTGCGTTTCAACGTCAGCGTGATC
GTCGAACAGAACGGCCGACGCGAACGCGGCGGCCACGGCGGCGGCGGTCGCACCGACTATCGCTATTTCCTC
CAGGAGGATCGCGCCATGGGCTACGCCCGCGAGGCCCTGCGCCAGGCGCTGGTCAACCTCGAGGCGATCCCC
GCGCCGGCCGGCACCCTGCCGGTGGTGATGGGCGCGGGTTGGTCCGGGGTCCTGCTCCACGAAGCGGTCGGC
CACGGCCTGGAGGGCGACTTCAACCGCAAGGGCAGCTCCGCCTACAGCGGCCGGGTCGGCGAAAAGGTCGCC
TCGAGCCTGTGCACCATCGTCGACGACGGCACCCTGGCCGGGCGTCGCGGCTCGCTGAGCGTGGATGACGAA
GGCACGCCGAGCAACTGCAACGTGCTGATCGAGAACGGCGTGCTCAAGGGCTACATGCAGGACAAGCTCAAC
GCCCGCCTGATGGGCGTGGCGCGCACCGGTAACGGCCGCCGCGAGTCCTACGCGCACCTGCCGATGCCACGC
ATGACCAACACCTACATGCTGGCCGGCGAGAGCGATCCGCAGGAAATCATCGCCTCGGTGGAGAAGGGTATC
TACTGCGCCAACCTCGGCGGTGGCCAGGTCGATATCACCAGCGGCAAGTTCGTGTTCTCCACCAGCGAGGCC
TACCTGATCGAGAACGGCAGGATCACCACCCCGGTGAAAGGCGCCACCCTGATCGGCAACGGTCCGGAAGCG
ATGAGCCGGGTGTCCATGGTCGGCAACGACCTGGCCCTGGACAGTGGCGTGGGAACCTGCGGGAAGGACGGT
CAGTCGGTGCCGGTCGGCGTCGGCCAGCCGACCCTGAAGATCGATGCGATCACCGTCGGCGGCACCGGCGCC
TGA