ViewGene

Locus Name:
GeneID:
Location:

GeneID:926
TrivialName: PA14_24300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24300
PAO1 Ortholog Locus:PA3081
Sequence Length:1368
Protein Length:455
Start: 2110380
Stop: 2111747
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06469.1|AE004732_3 (AE004732) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 455/455 (100%), Positives = 455/455 (100%)
Sequence:
ATGTTGAACAAGCACCTGCTGATCGGCGCTTCCCTGGCGCTGGCACTGGGCAGCGGCGGCGCGCTGGCCGGC
GTTTCCGCCGGCGAGGCGGCGCAACTGAAGTCGAGCCTCACCCCGCTGGGCGCGGAGAAGGCCGGCAACGCC
GCCGGCAGCATTCCCGCCTGGACCGGCGGCATCACCCAGGCGCCGGCCGGCTACAAGCCGGGCCAGCACCAC
CCGGACCCGTTCGCCGCGGACAAGCCGCTGTTCACCATCGACAAGGCCAACCTGGAGCAGTACAGGGAACAC
CTGACCCCGGGCCAACTGGCGCTGTTCAAGACCTACCCGGACAGCTTCCGGATGCCGGTCTACCCCAGTCGC
CGTTCCGGCTCGGCGCCGCAGTGGCTGTACGACAACACCTTCGCCAATGCCACCAGCGCCAGGCTGCTGGAC
GGCGGCAACGGGTTCGCCGACGCCTATGGCGGGGTGCCGTTCCCGATTCCGAAGAGCGGCGTGGAGGCGCTG
TGGAACCACGTCGCCCGCTACCGCGGTACCTATGTCGTGCGCCGCGCCTCGGAAGTCGCGGTACAGCGCAAC
GGTAGCTACTCGCTGGTGACCTCGCAGCAGGAAGCGCTGTTCAAGTACTACCTCAAGGGCGGCAGCTTCGCC
GACCTGAACAACCTGATGTTCTACTACCTGTCGTTCACCAAGAGCCCGGCGCGCCTGGCCGGCGGCGCGGTG
CTGGTGCACGAGACCCTCGACCAGGTCAAGGAGCCGCGCCAGGCCTGGGGCTACAACGCCGGCCAGCGCCGT
GTGCGGCGTGCGCCGAACCTTGCCTACGACACGCCGATCGCCGCCGCCGACGGCCTGCGCACCGCCGACGAC
ACCGATATGTTCAACGGCGCGCCGGACCGCTATGACTGGAAGCTGCTGGGCAAGAAGGAAATCTACATTCCC
TACAACAACTACAAGGTCAGCAGCCCCGAGGTGAAGTACGAGGAACTGCTCAAGCCGGGCCATCTCGATCCG
CAATACACCCGCTACGAACTGCACCGCGTGTGGGTGGTGGAAGGTACCCTGAAGCCGGGCGCGCGGCATATC
TACTCCAAACGCACCCTGTACCTCGACGAGGACAGCTGGAGCGCGGCGGTGGTCGACCAGTACGACGGTCGC
GGCGAACTGTGGCGGGTGTCCATGGCCTACCTGAAGAACTTCTACGACCTGCCGTACACCTGGAGCGCGCTG
GACGTGTTCCACGACCTGCAGGCGCGTCGCTACCACGTGCAGAACCTGGACAACGAGGAGCCGGGTACCATC
GACTTCACCCAGGCGATACCGGACGACTCCTACTTCAAGCCCTCGGCCCTGCGCCGCCGCGGCACCCGCTGA
Translation:
MLNKHLLIGASLALALGSGGALAGVSAGEAAQLKSSLTPLGAEKAGNAAGSIPAWTGGITQAPAGYKPGQHH
PDPFAADKPLFTIDKANLEQYREHLTPGQLALFKTYPDSFRMPVYPSRRSGSAPQWLYDNTFANATSARLLD
GGNGFADAYGGVPFPIPKSGVEALWNHVARYRGTYVVRRASEVAVQRNGSYSLVTSQQEALFKYYLKGGSFA
DLNNLMFYYLSFTKSPARLAGGAVLVHETLDQVKEPRQAWGYNAGQRRVRRAPNLAYDTPIAAADGLRTADD
TDMFNGAPDRYDWKLLGKKEIYIPYNNYKVSSPEVKYEELLKPGHLDPQYTRYELHRVWVVEGTLKPGARHI
YSKRTLYLDEDSWSAAVVDQYDGRGELWRVSMAYLKNFYDLPYTWSALDVFHDLQARRYHVQNLDNEEPGTI
DFTQAIPDDSYFKPSALRRRGTR*
AnnotationID:935GeneID:926
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 18:06:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3081
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:1855
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18997
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32432
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:926_cdd.html
URL:
Homologs By Global Alignment
Gene ID:926

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1638 PA3081_tr translation of PA3081 455 99.99 99.99 0 2421.0
58916 gb|AAG06469.1|AE004732_3 (AE004732) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 455 99.99 99.99 0 2421.0
58917 gb|AAO57248.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 456 68.64 83.33 6 1744.0
58918 gb|AAN55626.1|AE015701_3 (AE015701) conserved hypothetical protein [Shewanella oneidensis MR-1] 463 52.26 69.97 17 1290.0
58919 gb|AAG07309.1|AE004810_1 (AE004810) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 456 51.53 68.20 2 1233.0
GC ORFID: 43928How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3081Glimmer Score:
Start: 2843550Stop: 2842183
Length: 1368
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3081 translation of PA3081Homolog Bit Score 937.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene732 (ORF: BLASTX 675.0), t_PA3922 (ORF: BLASTX 479.0), psyr_15may02_Scaffold3_revised_gene4328 (ORF: BLASTX 463.0), t_PA3421 (ORF: BLASTX 443.0), t_PA0383 (ORF: BLASTX 431.0), t_PA3081 (ORF: GLIMMER)
GC ORF Sequence
ATGTTGAACAAGCACCTGCTGATCGGCGCTTCCCTGGCGCTGGCACTGGGCAGCGGCGGCGCGCTGGCCGGC
GTTTCCGCCGGCGAGGCGGCGCAACTGAAGTCGAGCCTCACCCCGCTGGGCGCGGAGAAGGCCGGCAACGCC
GCCGGCAGCATTCCCGCCTGGACCGGCGGCATCACCCAGGCGCCGGCCGGCTACAAGCCGGGCCAGCACCAC
CCGGACCCGTTCGCCGCGGACAAGCCGCTGTTCACCATCGACAAGGCCAACCTGGAGCAGTACAGGGAACAC
CTGACCCCGGGCCAACTGGCGCTGTTCAAGACCTACCCGGACAGCTTCCGGATGCCGGTCTACCCCAGTCGC
CGTTCCGGCTCGGCGCCGCAGTGGCTGTACGACAACACCTTCGCCAATGCCACCAGCGCCAGGCTGCTGGAC
GGCGGCAACGGGTTCGCCGACGCCTATGGCGGGGTGCCGTTCCCGATTCCGAAGAGCGGCGTGGAGGCGCTG
TGGAACCACGTCGCCCGCTACCGCGGTACCTATGTCGTGCGCCGCGCCTCGGAAGTCGCGGTACAGCGCAAC
GGTAGCTACTCGCTGGTGACCTCGCAGCAGGAAGCGCTGTTCAAGTACTACCTCAAGGGCGGCAGCTTCGCC
GACCTGAACAACCTGATGTTCTACTACCTGTCGTTCACCAAGAGCCCGGCGCGCCTGGCCGGCGGCGCGGTG
CTGGTGCACGAGACCCTCGACCAGGTCAAGGAGCCGCGCCAGGCCTGGGGCTACAACGCCGGCCAGCGCCGT
GTGCGGCGTGCGCCGAACCTTGCCTACGACACGCCGATCGCCGCCGCCGACGGCCTGCGCACCGCCGACGAC
ACCGATATGTTCAACGGCGCGCCGGACCGCTATGACTGGAAGCTGCTGGGCAAGAAGGAAATCTACATTCCC
TACAACAACTACAAGGTCAGCAGCCCCGAGGTGAAGTACGAGGAACTGCTCAAGCCGGGCCATCTCGATCCG
CAATACACCCGCTACGAACTGCACCGCGTGTGGGTGGTGGAAGGTACCCTGAAGCCGGGCGCGCGGCATATC
TACTCCAAACGCACCCTGTACCTCGACGAGGACAGCTGGAGCGCGGCGGTGGTCGACCAGTACGACGGTCGC
GGCGAACTGTGGCGGGTGTCCATGGCCTACCTGAAGAACTTCTACGACCTGCCGTACACCTGGAGCGCGCTG
GACGTGTTCCACGACCTGCAGGCGCGTCGCTACCACGTGCAGAACCTGGACAACGAGGAGCCGGGTACCATC
GACTTCACCCAGGCGATACCGGACGACTCCTACTTCAAGCCCTCGGCCCTGCGCCGCCGCGGCACCCGCTGA