ViewGene
Locus Name:
GeneID:
Location:

GeneID:925
TrivialName: PA14_50710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50710
PAO1 Ortholog Locus:PA1056
Sequence Length:1500
Protein Length:499
Start: 4504732
Stop: 4503233
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04445.1|AE004537_10 (AE004537) probable NADH dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 491/499 (98%), Positives = 497/499 (99%)
Sequence:
ATGAGCCATTGGCTGATCCTGCCGATCCTGCTCCCCCTGTTTGCCGGCAGCCTGTTGCTGTTGCCGCTGGCC
GAGCGCTGGCGGCGCGGCTTGTCGTTGCTCGCGGCGCTGGCGCTGATCCCATTGAGTCTGTTGCTGATGCGC
ACGGCCGCCAGCGGCGACCTGAGCGTCTATGCCCTGGGCAACTGGGCGGCGCCGTTCGGCATTGTGCTCATG
CTCGATCGTCTCGCCGCCCTGATGCTGCTGGCCACCGCGGTGCTCGGCAGCGCCGCGCTGATCTACGCGCTG
CGTGGCGACGACCGCCTGGGCAAGCATTTCCACGCGTTGTTCCAGTTCCAGCTGCTCGGTATCAACGGCGCC
TTCCTGACCGGCGACCTGTTCAACCTGTTCGTGTTCTTCGAGATACTCCTGATCGCCTCCTACGCGCTGCTC
CTATATGGCGGCGGCGCGGAGCGGGTGCGCTCGGGCCTGCACTACGTGATCCTCAACCTGGTCGGCTCGGCG
TTCTTCCTGATCGCCGTGGGTACCCTGTATGGCCTCACCGGCACCCTGAACATGGCCGACATGGCGCAGAAG
ATCGCCATGGCCGATGCCGAGCGCGCGCCGCTGCTGGCGGCTGCCGGGCTCCTGCTGCTGGTGGTGTTCGCC
CTGAAGGCGGCGCTGTTGCCGCTGTACTTCTGGCTGCCGCGCGCCTATGCCGCGGCCAGCGCGCCGGTGGCG
GCGCTGTTCGCGATCATGACCAAGGTCGGCATCTACTCGATCCTGCGGGTCTACACGCTGGTCTTCGGTGAG
GCCGCCGGCGAGCTGGCCAACCTGGCGCAGGCCTGGCTCTGGCCGCTGGCCCTGGCGACCCTCGGCCTGGGC
GCGATCGGTGCCTTGGCGGCGCGGACCCTGCAAGGCCTGCTGGCCTACCTGGTGGTGGTCTCCGCCGGAACC
CTCCTGGCTGGCGTGGCGTTGGGCAGCGAGCGGGCGCTGGCGGCGTCGCTGTACTACCTGCTGCACAGTACC
TGGATCGCCGGTGGCCTGTTCCTGCTCGCCGACCTGGTCGCCCGCCAGCGCGGCGACAAGGCCGGCGACCTG
GTCCAGGGCCCGGCGTTGCAGAACCCTCGGTTGCTCGGCGGGGCCTTCTTCATCGGTGCCATCGCCGTCGCC
GGTCTGCCGCCATTGTCGGGGTTCTTCGGCAAGATCATGCTTTTGCAGTCGGTCGCTCCCGGCAGCCAGGCG
CTGGCCCTGTGGAGCGTGGTACTGGGCAGTGGCCTGGTGGCGCTGGTGGCGTTGAGCCGGGCCGGCAGCACG
CTGTTCTGGCGCACCGGGCATACCGTGCTCGGTAGCGCCGAACTGGACCTCGGCCGCTTGTTCGCCTGCATC
CTGTTGCTCTCCGCCGGCCCGTTGCTGGTGTTCGCTGCGAAGCCGCTGCTGGCCTACGTCCAGGCCACCGCG
GCGCAGTTGCACGACCTCGACCTGTATCGCCAGATCATCACCCGCGGAGGTGCCGCATGA
Translation:
MSHWLILPILLPLFAGSLLLLPLAERWRRGLSLLAALALIPLSLLLMRTAASGDLSVYALGNWAAPFGIVLM
LDRLAALMLLATAVLGSAALIYALRGDDRLGKHFHALFQFQLLGINGAFLTGDLFNLFVFFEILLIASYALL
LYGGGAERVRSGLHYVILNLVGSAFFLIAVGTLYGLTGTLNMADMAQKIAMADAERAPLLAAAGLLLLVVFA
LKAALLPLYFWLPRAYAAASAPVAALFAIMTKVGIYSILRVYTLVFGEAAGELANLAQAWLWPLALATLGLG
AIGALAARTLQGLLAYLVVVSAGTLLAGVALGSERALAASLYYLLHSTWIAGGLFLLADLVARQRGDKAGDL
VQGPALQNPRLLGGAFFIGAIAVAGLPPLSGFFGKIMLLQSVAPGSQALALWSVVLGSGLVALVALSRAGST
LFWRTGHTVLGSAELDLGRLFACILLLSAGPLLVFAAKPLLAYVQATAAQLHDLDLYRQIITRGGAA*
AnnotationID:934GeneID:925
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 15:03:52
Gene Name:
Confidence Code:3
GeneProduct:probable NADH dehydrogenase
Cell Localization:()
Synonyms:PA1056, phaD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0651, COG1008, COG1007
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, 
MnhD subunit. Score: 209, 1e-54
COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M). Score: 136, 5e-33
COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2






   
Genomic Context:
This is in a cluster of genes homologous to the phaABCDEFG locus of Rhizobium 
meliloti (but the PAO1/PA14 locus lacks a phaB homolog). 







   
Comment:


















    ReferenceID:1853




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18995




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32210




  
Author/Investigator(s):
        Putnoky P, Kereszt A, Nakamura T, Endre G, Grosskopf E, Kiss P, Kondorosi A.





  
Title:
        The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system.




  
PubMed:
        98343795


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1091-101.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:925
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1637
                           PA1056_tr
                           translation of PA1056
                           499
                           98.39
                           99.59
                           0
                           2422.0
     

     
     
58899
                           gb|AAG04445.1|AE004537_10
                           (AE004537) probable NADH dehydrogenase [Pseudomonas aeruginosa PAO1]
                           499
                           98.39
                           99.59
                           0
                           2422.0
     

     
     
58900
                           gb|AAM39762.1|
                           (AE012142) PhaD protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           525
                           48.57
                           61.14
                           32
                           1106.0
     

     
     
58901
                           gb|AAM35351.1|
                           (AE011673) PhaD protein [Xanthomonas axonopodis pv. citri str. 306]
                           526
                           47.71
                           60.83
                           39
                           1081.0
     

     
     
58902
                           gb|AAC16122.1|
                           (AF010496) potential poly(3-hydroxyalkanoate) polymerase PhaD subunit [Rhodobacter capsulatus]
                           547
                           44.42
                           59.41
                           56
                           997.0
     

     






      

          
GC ORFID: 43927How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1056Glimmer Score: 

          
Start: 449176Stop: 450675

          
Length: 1500


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1056 translation of PA1056Homolog Bit Score 937.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1295 (ORF: BLASTX 358.0), t_PA1056 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCATTGGCTGATCCTGCCGATCCTGCTCCCCCTGTTTGCCGGCAGCCTGTTGCTGTTGCCGCTGGCC 
GAGCGCTGGCGGCGCGGCTTGTCGTTGCTCGCGGCGCTGGCGCTGATCCCATTGAGTCTGTTGCTGATGCGC 
ACGGCCGCCAGCGGCGACCTGAGCGTCTATGCCCTGGGCAACTGGGCGGCGCCGTTCGGCATTGTGCTCATG 
CTCGATCGTCTCGCCGCCCTGATGCTGCTGGCCACCGCGGTGCTCGGCAGCGCCGCGCTGATCTACGCGCTG 
CGTGGCGACGACCGCCTGGGCAAGCATTTCCACGCGTTGTTCCAGTTCCAGCTGCTCGGTATCAACGGCGCC 
TTCCTGACCGGCGACCTGTTCAACCTGTTCGTGTTCTTCGAGATACTCCTGATCGCCTCCTACGCGCTGCTC 
CTATATGGCGGCGGCGCGGAGCGGGTGCGCTCGGGCCTGCACTACGTGATCCTCAACCTGGTCGGCTCGGCG 
TTCTTCCTGATCGCCGTGGGTACCCTGTATGGCCTCACCGGCACCCTGAACATGGCCGACATGGCGCAGAAG 
ATCGCCATGGCCGATGCCGAGCGCGCGCCGCTGCTGGCGGCTGCCGGGCTCCTGCTGCTGGTGGTGTTCGCC 
CTGAAGGCGGCGCTGTTGCCGCTGTACTTCTGGCTGCCGCGCGCCTATGCCGCGGCCAGCGCGCCGGTGGCG 
GCGCTGTTCGCGATCATGACCAAGGTCGGCATCTACTCGATCCTGCGGGTCTACACGCTGGTCTTCGGTGAG 
GCCGCCGGCGAGCTGGCCAACCTGGCGCAGGCCTGGCTCTGGCCGCTGGCCCTGGCGACCCTCGGCCTGGGC 
GCGATCGGTGCCTTGGCGGCGCGGACCCTGCAAGGCCTGCTGGCCTACCTGGTGGTGGTCTCCGCCGGAACC 
CTCCTGGCTGGCGTGGCGTTGGGCAGCGAGCGGGCGCTGGCGGCGTCGCTGTACTACCTGCTGCACAGTACC 
TGGATCGCCGGTGGCCTGTTCCTGCTCGCCGACCTGGTCGCCCGCCAGCGCGGCGACAAGGCCGGCGACCTG 
GTCCAGGGCCCGGCGTTGCAGAACCCTCGGTTGCTCGGCGGGGCCTTCTTCATCGGTGCCATCGCCGTCGCC 
GGTCTGCCGCCATTGTCGGGGTTCTTCGGCAAGATCATGCTTTTGCAGTCGGTCGCTCCCGGCAGCCAGGCG 
CTGGCCCTGTGGAGCGTGGTACTGGGCAGTGGCCTGGTGGCGCTGGTGGCGTTGAGCCGGGCCGGCAGCACG 
CTGTTCTGGCGCACCGGGCATACCGTGCTCGGTAGCGCCGAACTGGACCTCGGCCGCTTGTTCGCCTGCATC 
CTGTTGCTCTCCGCCGGCCCGTTGCTGGTGTTCGCTGCGAAGCCGCTGCTGGCCTACGTCCAGGCCACCGCG 
GCGCAGTTGCACGACCTCGACCTGTATCGCCAGATCATCACCCGCGGAGGTGCCGCATGA