ViewGene
Locus Name:
GeneID:
Location:

GeneID:924
TrivialName: PA14_52460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52460
PAO1 Ortholog Locus:PA0913
Sequence Length:1449
Protein Length:482
Start: 4655518
Stop: 4654070
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04302.1|AE004525_10 (AE004525) probable Mg transporter MgtE [Pseudomonas aeruginosa PAO1]
Identities = 482/482 (100%), Positives = 482/482 (100%)
Sequence:
ATGACCGAAGTAGAAGCCAAGAAGCCGCAGGAAAGCCTGCAGGACCGCCTAGCGCAGGTGGTCGAGCTGCTG
CATCGCCACAAGGTGGTGGAGGACCTGACCCATCGTCAGGAAGGCCAGCACCATGACCGGGTGGAAAACCTC
GTCCACCGGCAGAATCTCGTAGAACTCCAGCGCAAGCTGGAGGAACTGCACCCCGCCGACATCGCCCACATC
CTCGAATCGCTGCCGCTGGACGACCGCCTGACGGTCTGGCAGCTGGTCAAGTCCGAGGACGACGGCGACATC
CTCCTCGAAGTCTCCGACGCGGTCCGGGAAACCCTGATCGCGGACATGGACGACCACGAGATCATCGCCGCG
ACCAAGGACCTGGACGCCGACGAACTCGCCGACCTGGCGCCGGAACTGCCGCGCGACGTGGTCCATGAACTG
ATGGAAAGCCTCGACGCGCAGCAGCGCGAGCGAGTGCGTTCGGCGCTGTCCTACGAGGAGGACCAGGTCGGC
GCGCTGATGGACTTCGAGATGGTCACCATCCGCGAGGACGTCAGCCTGGAAGTGGTGCTGCGCTACCTGCGC
CGCCTGAAGGAACTGCCCGGGCATACCGACAAACTGTTCGTGGTCGACTACGACGGCGTGCTCAAGGGCGTG
CTGCCGATCAAGCGCCTGCTGGTCAACGATCCGGACAAGCAAGTGCTGGAAGTCATGGCCACCGACCCGGTG
ACCTTCCACCCGGACGAGGACGGCTACGACGCCGCCCAGGCATTCGAGCGTTACGACCTGATTTCCGCGCCG
GTGGTGGACAAGGGCGGCAAGCTGATCGGTCGTCTGACCATCGACGAGATGGTCGACCTGATCCGTGAGGAG
AGCGAAAGCGAAGTCCTCAACATGGCCGGTCTGCGTGAAGAAGAAGACATCTTCGCCTCGGTCTGGAAGTCG
GTGCGTAACCGCTGGGCCTGGCTGGCCACCAACCTGATCACCGCCTTCGTCGCCTCGCGGGTGATCGGCCTG
TTCGAAGGCTCCATCGAGAAACTGGTGGCGCTGGCCGCGCTGATGCCGATCGTTGCCGGCATCGGTGGCAAT
TCCGGCAACCAGACCATCACCATGATCGTCCGCGCCATCGCGCTCGACCAGGTACAGCCGACCAGCAACAGT
CGCAACCGCCTGCTGCGCAAGGAGCTTGGCGTCGCGCTGGTCAACGGCCTGGCCTGGGGCGGAGTGATCGGC
GTGGTGGCCTTCTATCTTTACGGCAACTGGGAACTGGGCGTGGTGATGACCGCCGCGATGACCCTGAACCTG
CTGCTGGCGGCGATGATGGGAGTGCTGATCCCGATGACCCTGCATCGTTTCGGACGCGATCCGGCGATGGGC
TCCAGCGTGATGATCACTGCGATGACCGACAGCGGCGGTTTCTTCATCTTCCTCGGCCTGGCGACGATCTTC
CTGATGTAG
Translation:
MTEVEAKKPQESLQDRLAQVVELLHRHKVVEDLTHRQEGQHHDRVENLVHRQNLVELQRKLEELHPADIAHI
LESLPLDDRLTVWQLVKSEDDGDILLEVSDAVRETLIADMDDHEIIAATKDLDADELADLAPELPRDVVHEL
MESLDAQQRERVRSALSYEEDQVGALMDFEMVTIREDVSLEVVLRYLRRLKELPGHTDKLFVVDYDGVLKGV
LPIKRLLVNDPDKQVLEVMATDPVTFHPDEDGYDAAQAFERYDLISAPVVDKGGKLIGRLTIDEMVDLIREE
SESEVLNMAGLREEEDIFASVWKSVRNRWAWLATNLITAFVASRVIGLFEGSIEKLVALAALMPIVAGIGGN
SGNQTITMIVRAIALDQVQPTSNSRNRLLRKELGVALVNGLAWGGVIGVVAFYLYGNWELGVVMTAAMTLNL
LLAAMMGVLIPMTLHRFGRDPAMGSSVMITAMTDSGGFFIFLGLATIFLM*
AnnotationID:933GeneID:924
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 13:01:05
Gene Name:mgtE
Confidence Code:3
GeneProduct:probable Mg transporter MgtE
Cell Localization:()
Synonyms:PA0913
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2239, pfam03448
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain). Score: 448, 9e-127
pfam03448, MgtE_N, MgtE intracellular domain. Score: 111, 1e-25
pfam01769, MgtE, Divalent cation transporter. Score: 72.6, 9e-14






   
Genomic Context:






   
Comment:


















    ReferenceID:1851




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18993




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:924
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1636
                           PA0913_tr
                           translation of PA0913
                           482
                           99.99
                           99.99
                           0
                           2421.0
     

     
     
58882
                           gb|AAG04302.1|AE004525_10
                           (AE004525) probable Mg transporter MgtE [Pseudomonas aeruginosa PAO1]
                           482
                           99.99
                           99.99
                           0
                           2421.0
     

     
     
58883
                           gb|AAN70046.1|AE016643_7
                           (AE016790) magnesium transporter [Pseudomonas putida KT2440]
                           482
                           86.30
                           94.39
                           2
                           2116.0
     

     
     
58884
                           gb|AAO55365.1|
                           (AE016862) magnesium transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           482
                           85.89
                           93.98
                           2
                           2095.0
     

     
     
58886
                           gb|AAQ61247.1|
                           (AE016922) probable magnesium transporter [Chromobacterium violaceum ATCC 12472]
                           486
                           62.75
                           77.16
                           11
                           1507.0
     

     






      

          
GC ORFID: 43926How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0913Glimmer Score: 

          
Start: 298389Stop: 299837

          
Length: 1449


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0913 translation of PA0913Homolog Bit Score 937.0

          
Other Homologs:  psyr_15may02_Scaffold18_revised_gene2850 (ORF: BLASTX 742.0), t_PA0913 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAAGTAGAAGCCAAGAAGCCGCAGGAAAGCCTGCAGGACCGCCTAGCGCAGGTGGTCGAGCTGCTG 
CATCGCCACAAGGTGGTGGAGGACCTGACCCATCGTCAGGAAGGCCAGCACCATGACCGGGTGGAAAACCTC 
GTCCACCGGCAGAATCTCGTAGAACTCCAGCGCAAGCTGGAGGAACTGCACCCCGCCGACATCGCCCACATC 
CTCGAATCGCTGCCGCTGGACGACCGCCTGACGGTCTGGCAGCTGGTCAAGTCCGAGGACGACGGCGACATC 
CTCCTCGAAGTCTCCGACGCGGTCCGGGAAACCCTGATCGCGGACATGGACGACCACGAGATCATCGCCGCG 
ACCAAGGACCTGGACGCCGACGAACTCGCCGACCTGGCGCCGGAACTGCCGCGCGACGTGGTCCATGAACTG 
ATGGAAAGCCTCGACGCGCAGCAGCGCGAGCGAGTGCGTTCGGCGCTGTCCTACGAGGAGGACCAGGTCGGC 
GCGCTGATGGACTTCGAGATGGTCACCATCCGCGAGGACGTCAGCCTGGAAGTGGTGCTGCGCTACCTGCGC 
CGCCTGAAGGAACTGCCCGGGCATACCGACAAACTGTTCGTGGTCGACTACGACGGCGTGCTCAAGGGCGTG 
CTGCCGATCAAGCGCCTGCTGGTCAACGATCCGGACAAGCAAGTGCTGGAAGTCATGGCCACCGACCCGGTG 
ACCTTCCACCCGGACGAGGACGGCTACGACGCCGCCCAGGCATTCGAGCGTTACGACCTGATTTCCGCGCCG 
GTGGTGGACAAGGGCGGCAAGCTGATCGGTCGTCTGACCATCGACGAGATGGTCGACCTGATCCGTGAGGAG 
AGCGAAAGCGAAGTCCTCAACATGGCCGGTCTGCGTGAAGAAGAAGACATCTTCGCCTCGGTCTGGAAGTCG 
GTGCGTAACCGCTGGGCCTGGCTGGCCACCAACCTGATCACCGCCTTCGTCGCCTCGCGGGTGATCGGCCTG 
TTCGAAGGCTCCATCGAGAAACTGGTGGCGCTGGCCGCGCTGATGCCGATCGTTGCCGGCATCGGTGGCAAT 
TCCGGCAACCAGACCATCACCATGATCGTCCGCGCCATCGCGCTCGACCAGGTACAGCCGACCAGCAACAGT 
CGCAACCGCCTGCTGCGCAAGGAGCTTGGCGTCGCGCTGGTCAACGGCCTGGCCTGGGGCGGAGTGATCGGC 
GTGGTGGCCTTCTATCTTTACGGCAACTGGGAACTGGGCGTGGTGATGACCGCCGCGATGACCCTGAACCTG 
CTGCTGGCGGCGATGATGGGAGTGCTGATCCCGATGACCCTGCATCGTTTCGGACGCGATCCGGCGATGGGC 
TCCAGCGTGATGATCACTGCGATGACCGACAGCGGCGGTTTCTTCATCTTCCTCGGCCTGGCGACGATCTTC 
CTGATGTAG