ViewGene

Locus Name:
GeneID:
Location:

GeneID:921
TrivialName: PA14_06830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06830
PAO1 Ortholog Locus:PA0524
Sequence Length:1398
Protein Length:465
Start: 592432
Stop: 593829
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03913.1|AE004489_5 (AE004489) nitric-oxide reductase subunit B [Pseudomonas aeruginosa PAO1]
Identities = 464/466 (99%), Positives = 465/466 (99%), Gaps = 1/466 (0%)
Sequence:
ATGATGTCGCCCAATGGCTCCCTGAAATTCGCCTCGCAGGCGGTCGCCAAACCCTACTTCGTGTTCGCCCTG
ATCCTCTTCGTCGGGCAGATCCTGTTCGGCCTGATCATGGGCCTGCAGTACGTGGTCGGCGACTTCCTGTTC
CCGGCGATCCCCTTCAACGTCGCGCGCATGGTGCACACCAACCTGCTGATCGTCTGGCTGCTGTTCGGCTTC
ATGGGCGCTGCCTACTACCTGGTGCCGGAGGAGAGCGACTGCGAGCTGTACAGCCCGAAGCTGGCCTGGATC
CTGTTCTGGGTATTCGCCGCCGCCGGCGTGCTGACCATCCTCGGCTACCTGCTGGTGCCCTACGCCGGCCTG
GCCAGGCTCACCGGCAACGAACTGTGGCCGACCATGGGCCGCGAGTTCCTCGAACAGCCGACCATCAGCAAG
GCGGGCATCGTGATCGTCGCCCTGGGCTTCCTGTTCAACGTCGGCATGACCGTGCTGCGCGGGCGCAAGACC
GCCATCAGCATGGTCCTGATGACCGGCCTGATCGGCCTCGCCCTGCTGTTCCTGTTCTCCTTCTACAACCCG
GAAAACCTCACCCGCGACAAGTTCTACTGGTGGTGGGTGGTGCACCTGTGGGTGGAAGGCGTGTGGGAACTG
ATCATGGGTGCGATCCTCGCCTTCGTGCTGGTGAAGGTCACCGGGGTCGACCGCGAGGTGATCGAGAAGTGG
CTCTACGTGATCATCGCCATGGCGCTGATCAGCGGCATCATCGGCACCGGCCACCACTACTTCTGGATCGGC
GTGCCCGGCTACTGGCTGTGGCTCGGCTCGGTATTCTCGGCGCTGGAGCCGCTGCCGTTCTTCGCCATGGTG
CTGTTCGCCTTCAACACCATCAACCGCCGCCGCCGCGACTATCCGAACCGCGCGGTCGCGCTGTGGGCCATG
GGCACCACAGTGATGGCCTTCCTCGGCGCGGGAGTGTGGGGCTTCATGCATACCCTGGCGCCGGTCAACTAC
TACACCCACGGCACCCAGCTCACCGCCGCCCACGGCCACATGGCCTTCTATGGCGCCTACGCGATGATCGTG
ATGACCATCATCTCCTACGCCATGCCGCGCCTGCGCGGGATCGGCGAGGCGATGGACAACCGCTCGCAGGTC
CTGGAGATGTGGGGCTTCTGGCTGATGACCGTGGCGATGGTGTTCATCACCCTGTTCCTCTCCGCGGCCGGG
GTGCTGCAGGTCTGGCTGCAACGGATGCCGGCGGACGGCGCGGCGATGACCTTCATGGCCACCCAGGACCAG
CTGGCGATCTTCTACTGGCTGCGCGAAGGCGCCGGGGTGGTGTTCCTCATCGGCCTGGTCGCCTACCTGCTG
AGCTTCCGGCGCGGCAAGGCGGCCGCCTGA
Translation:
MMSPNGSLKFASQAVAKPYFVFALILFVGQILFGLIMGLQYVVGDFLFPAIPFNVARMVHTNLLIVWLLFGF
MGAAYYLVPEESDCELYSPKLAWILFWVFAAAGVLTILGYLLVPYAGLARLTGNELWPTMGREFLEQPTISK
AGIVIVALGFLFNVGMTVLRGRKTAISMVLMTGLIGLALLFLFSFYNPENLTRDKFYWWWVVHLWVEGVWEL
IMGAILAFVLVKVTGVDREVIEKWLYVIIAMALISGIIGTGHHYFWIGVPGYWLWLGSVFSALEPLPFFAMV
LFAFNTINRRRRDYPNRAVALWAMGTTVMAFLGAGVWGFMHTLAPVNYYTHGTQLTAAHGHMAFYGAYAMIV
MTIISYAMPRLRGIGEAMDNRSQVLEMWGFWLMTVAMVFITLFLSAAGVLQVWLQRMPADGAAMTFMATQDQ
LAIFYWLREGAGVVFLIGLVAYLLSFRRGKAAA*
AnnotationID:930GeneID:921
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:19
Gene Name:norB
Confidence Code:1
GeneProduct:nitric-oxide reductase subunit B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:cytochrome b subunit of nitric oxide reductase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):central intermediary metabolism
EC Number:1.7.99.7
Status:ACTIVE
Pathway:
Homology:
>emb|CAA82229.1| (Z28384) cytochrome b subunit of nitric oxide reductase
           [Pseudomonas stutzeri]
          Length = 474

 Score =  797 bits (2058), Expect = 0.0
 Identities = 379/460 (82%), Positives = 426/460 (92%)

>gb|AAG34384.1|AF197467_2 (AF197467) nitric oxide reductase cytochrome b subunit; NorB
           [Pseudomonas fluorescens]
          Length = 475

 Score =  767 bits (1981), Expect = 0.0
 Identities = 365/465 (78%), Positives = 413/465 (88%), Gaps = 1/465 (0%)

>emb|CAD85915.1| (BX321863) Cytochrome c oxidase, subunit I [Nitrosomonas europaea
           ATCC 19718]
          Length = 448

 Score =  522 bits (1344), Expect = e-147
 Identities = 242/448 (54%), Positives = 330/448 (73%), Gaps = 22/448 (4%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:1845
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18987
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33831
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:921_cdd.html
URL:
ReferenceID:35299
Author/Investigator(s): Arai H, Igarashi Y, Kodama T.
Title: The structural genes for nitric oxide reductase from Pseudomonas aeruginosa.
PubMed: 7711073
MedLine:
Source:
Biochim Biophys Acta. 1995 Apr 4;1261(2):279-84.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7711073
Homologs By Global Alignment
Gene ID:921

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1632 PA0524_tr translation of PA0524 466 99.57 99.78 1 2430.0
58748 gb|AAG03913.1|AE004489_5 (AE004489) nitric-oxide reductase subunit B [Pseudomonas aeruginosa PAO1] 466 99.57 99.78 1 2430.0
58749 dbj|BAA07330.1| (D38133) cytochrome b subunit of nitric oxide reductase [Pseudomonas aeruginosa] 466 99.57 99.78 1 2430.0
58750 emb|CAA82229.1| (Z28384) cytochrome b subunit of nitric oxide reductase [Pseudomonas stutzeri] 474 80.37 90.29 9 2059.0
58751 gb|AAG34384.1|AF197467_2 (AF197467) nitric oxide reductase cytochrome b subunit; NorB [Pseudomonas fluorescens] 475 76.84 86.94 10 1982.0
GC ORFID: 43923How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0524Glimmer Score:
Start: 6393774Stop: 6395171
Length: 1398
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0524 translation of PA0524Homolog Bit Score 939.0
Other Homologs: t_PA0524 (ORF: GLIMMER)
GC ORF Sequence
ATGATGTCGCCCAATGGCTCCCTGAAATTCGCCTCGCAGGCGGTCGCCAAACCCTACTTCGTGTTCGCCCTG
ATCCTCTTCGTCGGGCAGATCCTGTTCGGCCTGATCATGGGCCTGCAGTACGTGGTCGGCGACTTCCTGTTC
CCGGCGATCCCCTTCAACGTCGCGCGCATGGTGCACACCAACCTGCTGATCGTCTGGCTGCTGTTCGGCTTC
ATGGGCGCTGCCTACTACCTGGTGCCGGAGGAGAGCGACTGCGAGCTGTACAGCCCGAAGCTGGCCTGGATC
CTGTTCTGGGTATTCGCCGCCGCCGGCGTGCTGACCATCCTCGGCTACCTGCTGGTGCCCTACGCCGGCCTG
GCCAGGCTCACCGGCAACGAACTGTGGCCGACCATGGGCCGCGAGTTCCTCGAACAGCCGACCATCAGCAAG
GCGGGCATCGTGATCGTCGCCCTGGGCTTCCTGTTCAACGTCGGCATGACCGTGCTGCGCGGGCGCAAGACC
GCCATCAGCATGGTCCTGATGACCGGCCTGATCGGCCTCGCCCTGCTGTTCCTGTTCTCCTTCTACAACCCG
GAAAACCTCACCCGCGACAAGTTCTACTGGTGGTGGGTGGTGCACCTGTGGGTGGAAGGCGTGTGGGAACTG
ATCATGGGTGCGATCCTCGCCTTCGTGCTGGTGAAGGTCACCGGGGTCGACCGCGAGGTGATCGAGAAGTGG
CTCTACGTGATCATCGCCATGGCGCTGATCAGCGGCATCATCGGCACCGGCCACCACTACTTCTGGATCGGC
GTGCCCGGCTACTGGCTGTGGCTCGGCTCGGTATTCTCGGCGCTGGAGCCGCTGCCGTTCTTCGCCATGGTG
CTGTTCGCCTTCAACACCATCAACCGCCGCCGCCGCGACTATCCGAACCGCGCGGTCGCGCTGTGGGCCATG
GGCACCACAGTGATGGCCTTCCTCGGCGCGGGAGTGTGGGGCTTCATGCATACCCTGGCGCCGGTCAACTAC
TACACCCACGGCACCCAGCTCACCGCCGCCCACGGCCACATGGCCTTCTATGGCGCCTACGCGATGATCGTG
ATGACCATCATCTCCTACGCCATGCCGCGCCTGCGCGGGATCGGCGAGGCGATGGACAACCGCTCGCAGGTC
CTGGAGATGTGGGGCTTCTGGCTGATGACCGTGGCGATGGTGTTCATCACCCTGTTCCTCTCCGCGGCCGGG
GTGCTGCAGGTCTGGCTGCAACGGATGCCGGCGGACGGCGCGGCGATGACCTTCATGGCCACCCAGGACCAG
CTGGCGATCTTCTACTGGCTGCGCGAAGGCGCCGGGGTGGTGTTCCTCATCGGCCTGGTCGCCTACCTGCTG
AGCTTCCGGCGCGGCAAGGCGGCCGCCTGA