ViewGene
Locus Name:
GeneID:
Location:

GeneID:920
TrivialName: PA14_02700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02700
PAO1 Ortholog Locus:PA0221
Sequence Length:1383
Protein Length:460
Start: 240382
Stop: 241764
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03610.1|AE004460_3 (AE004460) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 459/460 (99%), Positives = 459/460 (99%)
Sequence:
ATGACCGCTCAGCTCAACCCGCAGCGCGACACCCGCGACTACCAGCAACTGGACGCCGCGCACCACATCCAC
GCCTTCCTCGACCAGAAGGCGCTGAACCGCGAAGGCCCGCGGGTGATGGTCCGCGGCGATGGCCTGCAGCTC
TGGGACAACGACGGCAAGCGCTACCTGGACGGCATGTCCGGCCTCTGGTGCACCAACCTCGGCTACGGCCGC
CAGGACCTCGCCGCCGCCGCCAGCCGCCAGCTGGAACAACTGCCGTACTACAACATGTTCTTCCACACCACC
CACCCGGCGGTGGTGGAGCTTTCCGAGATGCTCTTCAGCCTGCTGCCGGACCACTACAGCCACGCGATCTAC
ACCAACTCCGGCTCCGAGGCCAACGAGGTGCTGATCCGTACCGTGCGGCGCTACTGGCAGATCCTCGGCAAG
CCGCAGAAGAAGATCATGATCGGCCGCTGGAACGGCTACCACGGCTCGACCCTGGGCAGCACCGCGCTCGGC
GGGATGAAGTTCATGCACGAGATGGGCGGCATGCTGCCGGACTTCGCCCACATCGACGAACCCTACTGGTAC
GCCAACGGCGGCGAGCTGAGCCCGGCCGAGTTCGGTCGCCGCGCGGCGCTGCAACTGGAGGAGAAGATCCTC
GAACTGGGCGCGGAGAACGTCGCCGCCTTCGTCGCCGAGCCCTTCCAGGGCGCCGGCGGCATGATCTTCCCG
CCGCAAAGCTATTGGCCGGAGATCCAGCGCATCTGCCGGCAGTACGACGTGCTGCTGTGCGCCGACGAAGTG
ATCGGCGGCTTCGGCCGCACCGGCGAATGGTTCGCCCACGAACACTTCGGCTTCCAGCCGGACACCCTGTCC
ATCGCCAAGGGCCTGACGTCCGGCTACATCCCCATGGGCGGCCTGGTACTCGGCAAGCGCATCGCCGAGGTG
CTGGTGGAGCAGGGTGGGGTGTTCGCCCACGGCCTGACCTATTCCGGCCACCCGGTGGCGGCGGCGGTGGCC
ATCGCCAACCTCAAGGCGCTGCGCGACGAGGGCGTGGTCACGCGGGTCAGGGAGGAGACCGGACCCTACCTG
CAACGCTGCCTGCGCGAGGTCTTCGGCGACCATCCGCTGGTCGGCGAGGTCCAGGGCGCCGGCTTCGTCGCC
GCGCTGCAGTTCGCCGAGGACAAGGCGACCCGCAAGCGCTTCGCCAACGAGAACGATCTGGCCTGGCGCTGC
CGCACCATCGGCTTCGAGGAGGGCGTGATCATCCGCTCCACCCTCGGCCGCATGATCATGGCCCCGGCGCTG
GTGGCCGGGCGTGCCGAGATCGACGAACTGATCGACAAGACCCGTATCGCGGTGGATCGCACCGCGCGCGAG
ATCGGCGTGCTCTGA
Translation:
MTAQLNPQRDTRDYQQLDAAHHIHAFLDQKALNREGPRVMVRGDGLQLWDNDGKRYLDGMSGLWCTNLGYGR
QDLAAAASRQLEQLPYYNMFFHTTHPAVVELSEMLFSLLPDHYSHAIYTNSGSEANEVLIRTVRRYWQILGK
PQKKIMIGRWNGYHGSTLGSTALGGMKFMHEMGGMLPDFAHIDEPYWYANGGELSPAEFGRRAALQLEEKIL
ELGAENVAAFVAEPFQGAGGMIFPPQSYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFQPDTLS
IAKGLTSGYIPMGGLVLGKRIAEVLVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVREETGPYL
QRCLREVFGDHPLVGEVQGAGFVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMIMAPAL
VAGRAEIDELIDKTRIAVDRTAREIGVL*
AnnotationID:929GeneID:920
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 13:01:51
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferase, class III
Cell Localization:()
Synonyms:PA0221
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0161,pfam00202
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68196.1|AE016452_9 (AE016783) aminotransferase, class III [Pseudomonas putida KT2440]
          Length = 460

 Score =  818 bits (2113), Expect = 0.0
 Identities = 387/460 (84%), Positives = 425/460 (92%)

>gb|AAO58734.1| (AE016875) aminotransferase, class III [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 455

 Score =  517 bits (1332), Expect = e-146
 Identities = 245/454 (53%), Positives = 330/454 (72%), Gaps = 6/454 (1%)






 
Structural Features:
COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 
[Coenzyme metabolism]
CD-Length = 449 residues,  98.7% aligned
Score =  509 bits (1313), Expect = 3e-145
Identities = 195/448 (43%), Positives = 262/448 (58%), Gaps = 10/448 (2%)

pfam00202, Aminotran_3, Aminotransferase class-III.
CD-Length = 402 residues,  98.3% aligned
Score =  300 bits (769), Expect = 3e-82
Identities = 138/418 (33%), Positives = 213/418 (50%), Gaps = 25/418 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1843




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18985




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33581




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:920_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:920
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1630
                           PA0221_tr
                           translation of PA0221
                           460
                           99.78
                           99.78
                           0
                           2426.0
     

     
     
58731
                           gb|AAG03610.1|AE004460_3
                           (AE004460) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           460
                           99.78
                           99.78
                           0
                           2426.0
     

     
     
58732
                           gb|AAN68196.1|AE016452_9
                           (AE016783) aminotransferase, class III [Pseudomonas putida KT2440]
                           460
                           84.13
                           92.39
                           0
                           2113.0
     

     
     
58733
                           gb|AAQ59697.1|
                           (AE016917) probable aminotransferase [Chromobacterium violaceum ATCC 12472]
                           464
                           54.31
                           72.41
                           9
                           1385.0
     

     
     
58734
                           gb|AAO58734.1|
                           (AE016875) aminotransferase, class III [Pseudomonas syringae pv. tomato str. DC3000]
                           463
                           53.13
                           71.70
                           11
                           1337.0
     

     






      

          
GC ORFID: 43922How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0221Glimmer Score: 

          
Start: 6041723Stop: 6043105

          
Length: 1383


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0221 translation of PA0221Homolog Bit Score 939.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6510 (ORF: BLASTX 509.0), t_PA0299 (ORF: BLASTX 506.0), t_PA0221 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCTCAGCTCAACCCGCAGCGCGACACCCGCGACTACCAGCAACTGGACGCCGCGCACCACATCCAC 
GCCTTCCTCGACCAGAAGGCGCTGAACCGCGAAGGCCCGCGGGTGATGGTCCGCGGCGATGGCCTGCAGCTC 
TGGGACAACGACGGCAAGCGCTACCTGGACGGCATGTCCGGCCTCTGGTGCACCAACCTCGGCTACGGCCGC 
CAGGACCTCGCCGCCGCCGCCAGCCGCCAGCTGGAACAACTGCCGTACTACAACATGTTCTTCCACACCACC 
CACCCGGCGGTGGTGGAGCTTTCCGAGATGCTCTTCAGCCTGCTGCCGGACCACTACAGCCACGCGATCTAC 
ACCAACTCCGGCTCCGAGGCCAACGAGGTGCTGATCCGTACCGTGCGGCGCTACTGGCAGATCCTCGGCAAG 
CCGCAGAAGAAGATCATGATCGGCCGCTGGAACGGCTACCACGGCTCGACCCTGGGCAGCACCGCGCTCGGC 
GGGATGAAGTTCATGCACGAGATGGGCGGCATGCTGCCGGACTTCGCCCACATCGACGAACCCTACTGGTAC 
GCCAACGGCGGCGAGCTGAGCCCGGCCGAGTTCGGTCGCCGCGCGGCGCTGCAACTGGAGGAGAAGATCCTC 
GAACTGGGCGCGGAGAACGTCGCCGCCTTCGTCGCCGAGCCCTTCCAGGGCGCCGGCGGCATGATCTTCCCG 
CCGCAAAGCTATTGGCCGGAGATCCAGCGCATCTGCCGGCAGTACGACGTGCTGCTGTGCGCCGACGAAGTG 
ATCGGCGGCTTCGGCCGCACCGGCGAATGGTTCGCCCACGAACACTTCGGCTTCCAGCCGGACACCCTGTCC 
ATCGCCAAGGGCCTGACGTCCGGCTACATCCCCATGGGCGGCCTGGTACTCGGCAAGCGCATCGCCGAGGTG 
CTGGTGGAGCAGGGTGGGGTGTTCGCCCACGGCCTGACCTATTCCGGCCACCCGGTGGCGGCGGCGGTGGCC 
ATCGCCAACCTCAAGGCGCTGCGCGACGAGGGCGTGGTCACGCGGGTCAGGGAGGAGACCGGACCCTACCTG 
CAACGCTGCCTGCGCGAGGTCTTCGGCGACCATCCGCTGGTCGGCGAGGTCCAGGGCGCCGGCTTCGTCGCC 
GCGCTGCAGTTCGCCGAGGACAAGGCGACCCGCAAGCGCTTCGCCAACGAGAACGATCTGGCCTGGCGCTGC 
CGCACCATCGGCTTCGAGGAGGGCGTGATCATCCGCTCCACCCTCGGCCGCATGATCATGGCCCCGGCGCTG 
GTGGCCGGGCGTGCCGAGATCGACGAACTGATCGACAAGACCCGTATCGCGGTGGATCGCACCGCGCGCGAG 
ATCGGCGTGCTCTGA