ViewGene
Locus Name:
GeneID:
Location:

GeneID:92
TrivialName: PA14_30700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30700
PAO1 Ortholog Locus:PA2583
Sequence Length:2979
Protein Length:992
Start: 2661144
Stop: 2664122
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05971.1|AE004686_9 (AE004686) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
Identities = 944/992 (95%), Positives = 963/992 (97%)
Sequence:
ATGGCGACATCGGTGCCGATGTGTCCGCAGGCTCTGGGGCGCGGATGCCATGCCCTCTATCCGGCCGGAGAA
CTTTGCCATCGAAGACTCGACATGCTGACAAGGTCGTTGCTGTCCGCGGTCTTTTGCCTGTTGCCGATCATC
CTGCAGCCGCTGCCCGTCGCGGCCGAATCCATCCTGCTCGATGGTCGTATGACGACAACGACGCGCCCCTGG
CTCGACAAACGAGCCAGGCAGTGGCTGGATGCCCGGGAGCCGCTGACGATAGGCGTGGTTTCTCCCGACTAT
CCGCCGCTATCCATCTTCTACGCAGGTTCCTACAAGGGCTTCACGGCCGATTACCTGGCCCTGGTGTTCGAG
CGGCCGTTGCGTGTCAGGGACTTTCCGTCGCGGCAGGCGGCAATCGCTGCGTTGTCGCGGGGAGAGATCGAT
CTGCTCGGTGTCGGTAGCGAGGTCGAGGCCCGGCAACACGGATTGCTGGCATCCGCTGCGTATCTTTCCGAC
CGGCCGGTACTGGTGTCTTCCAGCGGCGCCCCGTTCGATTCGCAGGCGGAGTCCTGGCTGGCCACGGTCAAG
GGTTATCTTCCCGCCGAACGTATCAAGGCCGCCTATCCGCACAGCAAGGTCATCTGGTTCGACTCGCCGCAG
CTTGCCCTGGAAGCGCTGAGCATGGGGGACGTCGATGGCGTGCTGGGTGACGCCGTCTCCGCGCACTATCTC
ATCCAGACCCATTACCTGCTGAACTTGCGTATCGAGAACTTCGCGCCCATCGACAGCCAGGGTTTCCGTTTC
CTGCTCCGGCCGGGGGATGAGCCTCTGCTCGCGGTCCTCGATCGAGCCCTGCCGCGTATCAATGGGCGCTAC
GGCGACGAACTGTTGCGCAGTTGGAGCGCCGGGCGGCGCCTGCGTTTCGACGAGCCCAGGGTGACGCTTGCG
CCGGCGGAACAGCGTTGGCTCTCCACGCATCCGGTCGTGCCGGTGGTGATCAACCATTCCCTTGGCGCGCTC
GGGCAACTGGATAGCGAGGGGCGGCTGAGCGGTATCGGGCGTGACTATCTGGACCTGATCGGCAAGCGCAGC
GGCCTGCAGTTTTCCTTCAGCGGAGCCCGAAACTTCGTCGAGGCGAAACGTCGACTGGATGCGGGCGAAGCG
TTGGTTACGCCGACCATGCCCTCGACGGAGCGTCTCGATTCCGGCCTCGAGGTCCTGACTCCCTACCTGCGT
AGCACCACGGTGCTGATGAGCGCCAGCCGGGGCGGCCGGGGCGAACGGCTGGAGCGTGTCCATGGCCTCGCG
GATCTCGACGGCAAGCGATTGGCCACGACGGTTGGCTATTTCCTCAACGACACCATTCGGCGCGATCACCCT
GAGATCAAGCTCCAGGTCTATCCGACCTTTCTCGCCGCGATGCAAAGCGTCGATGCCGGACAGAGCGAGGCT
TCTATCAGCAGCGATTATACCGGTCGCTATCTGTCCGCCCAGCATTTCGACAACCGGATCCAGGTCGTCGGT
ATCCTCGATGATCTCTCCATTCCGATCAGCATCGGTGTGGCGAGGAACCAGCCCGAGCTGCAGGGCATCCTG
GAGAAGGCGCAGCTGGCGATCGCTCCGGAAGAAGTGGCGGAAATCCTCCACCGCTGGGAGCCTCGCTTCGCC
AAGGGAGGGACGGACTTCTGGCGCGATCACCGGAGCAAGATTCTGCAGATCGGCGGATTGTTCGGCGTACTG
ATTTCCATCTCTCTCATCTGGGGTTTCTACCTGATGCGCCAGGTGCGCAAGACCCGCCAGGCAGAAGAGCAA
GCTGACGCTGCCAACCGTGCCAAGAGCGTGTTTCTTTCGACGATGAGTCACGAGATCCGCACGCCATTGAAC
GCGGTCATCGGCTTGCAGGAGCTGGTGCTGAAAAAGGGCGAGAAGGGCGTGTTGGATCTCGATTCGCTGAGC
ATCGCCCAGGAAGCTGCCCAGGGGTTGCTGCTTCTGCTGGGTAATATTCTCGATTTGTCGCGGATCGAATCC
GGTCGGTTCGATTCCGCTCCCGAACCAGTGCTTCCTGGCGAGTTGATCAGAGGGATCCTGCCGCTGGTTGGC
GGGCTGACGCGGCAGAAGAATCTTTCCCTGGCACTGGAACTCGACGGGGATCTCGAGCAGTGGGTGCTGGTG
GATCCCCTGCATTTCAAGCAGGTGTTGTTCAACTTGCTGGGCAACGCCATCAAGTTCACCGAGCGCGGTGGG
GTAACGGTGCGGGCGGTGGGGCGGCGCGAGGCGGAGAGGCTTCATTTGCTGCTCGAGGTAAGCGACACCGGC
CTCGGTATTTCGGAGGAGGACCAGGCCAGGCTGTTCCGGCCATTCTCGCAGGTCGGCTCGCCTGCGCTTGGC
CAGGCGTCCGGCAGCGGCCTGGGGTTGTACATCAGCCGACGCCTGGTACACCTGATGGGCGGCCAGATCAGC
CTGCGCAGCGAGCTGGGCAACGGCTCCTGCTTCTCGGTCGAGTTCGATCTTCCGCTGACCGAACCTCCGCCC
AGCGAGTCCAGCGAAGCGCGTTCCGGAGTTGCCGAGGTCGAGGAGCGGAAAGAGGCAAGGGCGCTCTCGATA
TTGCTTGCGGAAGACCATCCGTTCAATCGGCTGACCCTGACCATGCAATTGGAAAGCCTTGGGCACCGGGTG
ACCTCCACGGAAGATGGCGAGGAAGCATTCGAACGTTGGCAGGGCGAAGACTTCGACGTCGTGATTACCGAC
GGCATGATGCCGCGGATGGATGGCTACGAGCTGGCGCGACGGATCCGCTCGCAAGAAGCCCTTGGCGGTCGG
CGTCGCTGCTTGGTGATAGCGCTTACCGCCAGCGCCGAGAAGGATGCGCTGGAGCGTTGCCTGGCTGCCGGC
ATGGACCGGGTCCTGTTCAAGCCGACTACGCTCGATGAGCTCGCTCGGGCGCTGAACGGGGGAGAGCCGCTC
ATGCCTACGAGCGTCGATTCGCAATGA
Translation:
MATSVPMCPQALGRGCHALYPAGELCHRRLDMLTRSLLSAVFCLLPIILQPLPVAAESILLDGRMTTTTRPW
LDKRARQWLDAREPLTIGVVSPDYPPLSIFYAGSYKGFTADYLALVFERPLRVRDFPSRQAAIAALSRGEID
LLGVGSEVEARQHGLLASAAYLSDRPVLVSSSGAPFDSQAESWLATVKGYLPAERIKAAYPHSKVIWFDSPQ
LALEALSMGDVDGVLGDAVSAHYLIQTHYLLNLRIENFAPIDSQGFRFLLRPGDEPLLAVLDRALPRINGRY
GDELLRSWSAGRRLRFDEPRVTLAPAEQRWLSTHPVVPVVINHSLGALGQLDSEGRLSGIGRDYLDLIGKRS
GLQFSFSGARNFVEAKRRLDAGEALVTPTMPSTERLDSGLEVLTPYLRSTTVLMSASRGGRGERLERVHGLA
DLDGKRLATTVGYFLNDTIRRDHPEIKLQVYPTFLAAMQSVDAGQSEASISSDYTGRYLSAQHFDNRIQVVG
ILDDLSIPISIGVARNQPELQGILEKAQLAIAPEEVAEILHRWEPRFAKGGTDFWRDHRSKILQIGGLFGVL
ISISLIWGFYLMRQVRKTRQAEEQADAANRAKSVFLSTMSHEIRTPLNAVIGLQELVLKKGEKGVLDLDSLS
IAQEAAQGLLLLLGNILDLSRIESGRFDSAPEPVLPGELIRGILPLVGGLTRQKNLSLALELDGDLEQWVLV
DPLHFKQVLFNLLGNAIKFTERGGVTVRAVGRREAERLHLLLEVSDTGLGISEEDQARLFRPFSQVGSPALG
QASGSGLGLYISRRLVHLMGGQISLRSELGNGSCFSVEFDLPLTEPPPSESSEARSGVAEVEERKEARALSI
LLAEDHPFNRLTLTMQLESLGHRVTSTEDGEEAFERWQGEDFDVVITDGMMPRMDGYELARRIRSQEALGGR
RRCLVIALTASAEKDALERCLAAGMDRVLFKPTTLDELARALNGGEPLMPTSVDSQ*
AnnotationID:102GeneID:92
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 08:08:09
Gene Name:
Confidence Code:3
GeneProduct:putative sensor/response regulator hybrid
Cell Localization:()
Synonyms:PA2583
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642,smart00387,cd00075
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69015.1|AE016533_7 (AE016786) sensor histidine kinase/response regulator [Pseudomonas
           putida KT2440]
          Length = 1093

 Score =  542 bits (1396), Expect = e-153
 Identities = 356/942 (37%), Positives = 507/942 (53%), Gaps = 49/942 (5%)

>emb|CAE38319.1| (BX640432) virulence sensor protein [Bordetella parapertussis]
          Length = 1238

 Score =  331 bits (848), Expect = 2e-89
 Identities = 191/392 (48%), Positives = 246/392 (62%), Gaps = 5/392 (1%)

>emb|CAE33487.1| (BX640446) virulence sensor protein [Bordetella bronchiseptica]
          Length = 1238

 Score =  330 bits (846), Expect = 3e-89
 Identities = 190/392 (48%), Positives = 246/392 (62%), Gaps = 5/392 (1%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
CD-Length = 336 residues,  98.8% aligned
Score =  151 bits (382), Expect = 3e-37
Identities = 100/344 (29%), Positives = 157/344 (45%), Gaps = 13/344 (3%)

smart00387, HATPase_c, Histidine kinase-like ATPases; Histidine kinase-, 
DNA gyrase B-, phytochrome-like ATPases.
CD-Length = 112 residues,  99.1% aligned
Score =  110 bits (275), Expect = 1e-24
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 6/116 (5%)

cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score = 98.1 bits (244), Expect = 4e-21
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 4/107 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:187




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17329




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33154




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:92_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:92
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
171
                           PA2583_tr
                           translation of PA2583
                           992
                           95.16
                           97.07
                           0
                           4793.0
     

     
     
14313
                           gb|AAG05971.1|AE004686_9
                           (AE004686) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
                           992
                           95.16
                           97.07
                           0
                           4793.0
     

     
     
14314
                           emb|CAE38319.1|
                           (BX640432) virulence sensor protein [Bordetella parapertussis]
                           1278
                           28.87
                           41.70
                           326
                           1408.0
     

     
     
14316
                           emb|CAA37124.1|
                           (X52948) bvgS product, put. sensor protein [Bordetella parapertussis]
                           1278
                           28.79
                           41.54
                           326
                           1400.0
     

     
     
14315
                           emb|CAE33487.1|
                           (BX640446) virulence sensor protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           1280
                           28.59
                           41.79
                           330
                           1407.0
     

     






      

          
GC ORFID: 43094How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2583Glimmer Score: 

          
Start: 2292782Stop: 2289804

          
Length: 2979


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2583 translation of PA2583Homolog Bit Score 1850.0

          
Other Homologs:  t_PA2583 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGACATCGGTGCCGATGTGTCCGCAGGCTCTGGGGCGCGGATGCCATGCCCTCTATCCGGCCGGAGAA 
CTTTGCCATCGAAGACTCGACATGCTGACAAGGTCGTTGCTGTCCGCGGTCTTTTGCCTGTTGCCGATCATC 
CTGCAGCCGCTGCCCGTCGCGGCCGAATCCATCCTGCTCGATGGTCGTATGACGACAACGACGCGCCCCTGG 
CTCGACAAACGAGCCAGGCAGTGGCTGGATGCCCGGGAGCCGCTGACGATAGGCGTGGTTTCTCCCGACTAT 
CCGCCGCTATCCATCTTCTACGCAGGTTCCTACAAGGGCTTCACGGCCGATTACCTGGCCCTGGTGTTCGAG 
CGGCCGTTGCGTGTCAGGGACTTTCCGTCGCGGCAGGCGGCAATCGCTGCGTTGTCGCGGGGAGAGATCGAT 
CTGCTCGGTGTCGGTAGCGAGGTCGAGGCCCGGCAACACGGATTGCTGGCATCCGCTGCGTATCTTTCCGAC 
CGGCCGGTACTGGTGTCTTCCAGCGGCGCCCCGTTCGATTCGCAGGCGGAGTCCTGGCTGGCCACGGTCAAG 
GGTTATCTTCCCGCCGAACGTATCAAGGCCGCCTATCCGCACAGCAAGGTCATCTGGTTCGACTCGCCGCAG 
CTTGCCCTGGAAGCGCTGAGCATGGGGGACGTCGATGGCGTGCTGGGTGACGCCGTCTCCGCGCACTATCTC 
ATCCAGACCCATTACCTGCTGAACTTGCGTATCGAGAACTTCGCGCCCATCGACAGCCAGGGTTTCCGTTTC 
CTGCTCCGGCCGGGGGATGAGCCTCTGCTCGCGGTCCTCGATCGAGCCCTGCCGCGTATCAATGGGCGCTAC 
GGCGACGAACTGTTGCGCAGTTGGAGCGCCGGGCGGCGCCTGCGTTTCGACGAGCCCAGGGTGACGCTTGCG 
CCGGCGGAACAGCGTTGGCTCTCCACGCATCCGGTCGTGCCGGTGGTGATCAACCATTCCCTTGGCGCGCTC 
GGGCAACTGGATAGCGAGGGGCGGCTGAGCGGTATCGGGCGTGACTATCTGGACCTGATCGGCAAGCGCAGC 
GGCCTGCAGTTTTCCTTCAGCGGAGCCCGAAACTTCGTCGAGGCGAAACGTCGACTGGATGCGGGCGAAGCG 
TTGGTTACGCCGACCATGCCCTCGACGGAGCGTCTCGATTCCGGCCTCGAGGTCCTGACTCCCTACCTGCGT 
AGCACCACGGTGCTGATGAGCGCCAGCCGGGGCGGCCGGGGCGAACGGCTGGAGCGTGTCCATGGCCTCGCG 
GATCTCGACGGCAAGCGATTGGCCACGACGGTTGGCTATTTCCTCAACGACACCATTCGGCGCGATCACCCT 
GAGATCAAGCTCCAGGTCTATCCGACCTTTCTCGCCGCGATGCAAAGCGTCGATGCCGGACAGAGCGAGGCT 
TCTATCAGCAGCGATTATACCGGTCGCTATCTGTCCGCCCAGCATTTCGACAACCGGATCCAGGTCGTCGGT 
ATCCTCGATGATCTCTCCATTCCGATCAGCATCGGTGTGGCGAGGAACCAGCCCGAGCTGCAGGGCATCCTG 
GAGAAGGCGCAGCTGGCGATCGCTCCGGAAGAAGTGGCGGAAATCCTCCACCGCTGGGAGCCTCGCTTCGCC 
AAGGGAGGGACGGACTTCTGGCGCGATCACCGGAGCAAGATTCTGCAGATCGGCGGATTGTTCGGCGTACTG 
ATTTCCATCTCTCTCATCTGGGGTTTCTACCTGATGCGCCAGGTGCGCAAGACCCGCCAGGCAGAAGAGCAA 
GCTGACGCTGCCAACCGTGCCAAGAGCGTGTTTCTTTCGACGATGAGTCACGAGATCCGCACGCCATTGAAC 
GCGGTCATCGGCTTGCAGGAGCTGGTGCTGAAAAAGGGCGAGAAGGGCGTGTTGGATCTCGATTCGCTGAGC 
ATCGCCCAGGAAGCTGCCCAGGGGTTGCTGCTTCTGCTGGGTAATATTCTCGATTTGTCGCGGATCGAATCC 
GGTCGGTTCGATTCCGCTCCCGAACCAGTGCTTCCTGGCGAGTTGATCAGAGGGATCCTGCCGCTGGTTGGC 
GGGCTGACGCGGCAGAAGAATCTTTCCCTGGCACTGGAACTCGACGGGGATCTCGAGCAGTGGGTGCTGGTG 
GATCCCCTGCATTTCAAGCAGGTGTTGTTCAACTTGCTGGGCAACGCCATCAAGTTCACCGAGCGCGGTGGG 
GTAACGGTGCGGGCGGTGGGGCGGCGCGAGGCGGAGAGGCTTCATTTGCTGCTCGAGGTAAGCGACACCGGC 
CTCGGTATTTCGGAGGAGGACCAGGCCAGGCTGTTCCGGCCATTCTCGCAGGTCGGCTCGCCTGCGCTTGGC 
CAGGCGTCCGGCAGCGGCCTGGGGTTGTACATCAGCCGACGCCTGGTACACCTGATGGGCGGCCAGATCAGC 
CTGCGCAGCGAGCTGGGCAACGGCTCCTGCTTCTCGGTCGAGTTCGATCTTCCGCTGACCGAACCTCCGCCC 
AGCGAGTCCAGCGAAGCGCGTTCCGGAGTTGCCGAGGTCGAGGAGCGGAAAGAGGCAAGGGCGCTCTCGATA 
TTGCTTGCGGAAGACCATCCGTTCAATCGGCTGACCCTGACCATGCAATTGGAAAGCCTTGGGCACCGGGTG 
ACCTCCACGGAAGATGGCGAGGAAGCATTCGAACGTTGGCAGGGCGAAGACTTCGACGTCGTGATTACCGAC 
GGCATGATGCCGCGGATGGATGGCTACGAGCTGGCGCGACGGATCCGCTCGCAAGAAGCCCTTGGCGGTCGG 
CGTCGCTGCTTGGTGATAGCGCTTACCGCCAGCGCCGAGAAGGATGCGCTGGAGCGTTGCCTGGCTGCCGGC 
ATGGACCGGGTCCTGTTCAAGCCGACTACGCTCGATGAGCTCGCTCGGGCGCTGAACGGGGGAGAGCCGCTC 
ATGCCTACGAGCGTCGATTCGCAATGA