ViewGene
Locus Name:
GeneID:
Location:

GeneID:919
TrivialName: PA14_09500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09500
PAO1 Ortholog Locus:PA4208
Sequence Length:1464
Protein Length:487
Start: 816309
Stop: 814846
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07595.1|AE004837_6 (AE004837) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 484/487 (99%), Positives = 485/487 (99%)
Sequence:
ATGAAGCGCTCCTACCCGAACCTTTCGCGCCTGGCGCTGGCCCTGGCGGTCGGCACCGGCCTGGCCGCCTGC
AGCGTCGGCCCCGACTACCAGCGTCCGCAGTCGCCGCCGCCACGCGTCGCCAGCGAGCACCTCGACGAGTTC
TCCGGCGAGCGGCGGGAAGCGCCCTGGTGGAGCTTCTTCGACGATCCGCAACTGGTGCGCCTGGTCGACCAG
GCGCTGGCGCGCAACCACGACATCCGCGAGGCCCGCGCCAACCTGCGCAGCGCCCGCGCGCTGTTCGACGAC
CGCTGGCTCGACCAGTTGCCGCAGGTCACCAGCCAGGCCGGCTACAGCCGCAGCATCGAACAACAGCTGGAC
TACGACGGCGAGCCGCGCCGGCGCCTGGCGGAGAGCTACCGCGCCGGCTTCGACGCGCAGTGGGAAATCGAC
CTGTTCGGCCGCCTCGGCCGACTTTCCGACGCCGCCCTGGCCCGCGCCGAAGCGGCCGACGCCGACCTCCGG
CTGGTACGCCTGAGCATCGCCGCCGACACCGCCCGCGCCTACTTCGAGATCCAGGGCTACCAGCGCCGGCTG
GACGTGGCGCGCGCCCAGGTGCGCAGTTGGCGCGACACCCTGGAGCTGACCCGCAGCAGCCTGCAACTGGGC
AGCGGCCTGCCGGAGGACGTGGAGAACGCCCAGGCCAACCTGCTGCGCAGCGAAGCGGCGATTCCGCCACTG
ACGACCGCGCTGGAGAGCGCCCGCTATCGCCTCGACGTGCTGCGCGGCGAGGCACCGGGCAGCGGCGCGCCG
ATCCTCGACGGTGGCGGCGCCGCGCCATTGGCGAAGAACCTGCCGCTGGGCGACGTCGACCGCCTGATCCTC
CAGCGCCCCGACGTAGTTAGCGCCGAGCGGCAACTGGCAGCGAGCACCGAAGACGTCGGCGCGGCCACCGCC
GAACTCTATCCGCGCCTCGACCTGGGCGGCTTCATCGGTTTCTTCGCCCTGCGCAGCGGCGACCTCGGCAGC
GCCTCGCGCGCCTTCGAACTGGCGCCCAGCGTCAGTTGGCCGGCGTTCCGCCTGGGCAACGTGCGGGCCCGC
CTGCGCGCCGTCGAGGCGCAGTCCGACGCCGCGCTGGCGCGCTACCAGCGCTCCCTGCTGCTGGCCCAGGAG
GACGTCGGCAACGCGCTCAACCAACTGGCCGAACACCAGCGTCGGCTGGTCGCCCTGTTCCAGTCCGCGACC
CATGGCGCGAACGCCCTGGAGATCGCCAACGAACGCTACCGCGCCGGCGCCGGCAGCTACCTGGCGGTGCTG
GAGAACCAGCGCGCGCTGTACCAGATCCGCGAGGAACTGGCGCAGGCGGAGACCGCCTCGTTCGTCAACGTC
ATCGCCCTCTACAAGGCGCTCGGCTGGGGCAGCGGCGACCTGGCGCCGGGCGCCGGCCAACTGGCCGCCGGC
GAAACCGCCGGGGCCAGCCGTTGA
Translation:
MKRSYPNLSRLALALAVGTGLAACSVGPDYQRPQSPPPRVASEHLDEFSGERREAPWWSFFDDPQLVRLVDQ
ALARNHDIREARANLRSARALFDDRWLDQLPQVTSQAGYSRSIEQQLDYDGEPRRRLAESYRAGFDAQWEID
LFGRLGRLSDAALARAEAADADLRLVRLSIAADTARAYFEIQGYQRRLDVARAQVRSWRDTLELTRSSLQLG
SGLPEDVENAQANLLRSEAAIPPLTTALESARYRLDVLRGEAPGSGAPILDGGGAAPLAKNLPLGDVDRLIL
QRPDVVSAERQLAASTEDVGAATAELYPRLDLGGFIGFFALRSGDLGSASRAFELAPSVSWPAFRLGNVRAR
LRAVEAQSDAALARYQRSLLLAQEDVGNALNQLAEHQRRLVALFQSATHGANALEIANERYRAGAGSYLAVL
ENQRALYQIREELAQAETASFVNVIALYKALGWGSGDLAPGAGQLAAGETAGASR*
AnnotationID:928GeneID:919
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 06:06:27
Gene Name:opmD
Confidence Code:1
GeneProduct:outer membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:outer membrane efflux protein
Functional Category Confidence Code:5
COGs:COG1538
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE35828.1| (BX640448) outer membrane component of multidrug efflux system
           [Bordetella bronchiseptica]
          Length = 487

 Score =  407 bits (1046), Expect = e-113
 Identities = 226/467 (48%), Positives = 305/467 (65%), Gaps = 5/467 (1%)






 
Structural Features:
COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / 
Intracellular trafficking and secretion]
CD-Length = 457 residues,  99.3% aligned
Score =  226 bits (577), Expect = 4e-60
Identities = 165/459 (35%), Positives = 233/459 (50%), Gaps = 6/459 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1841




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18983




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36808




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:919_cdd.html


    		




 
URL:

















    ReferenceID:37008




  
Author/Investigator(s):
        Aendekerk S, Ghysels B, Cornelis P, Baysse C.





  
Title:
        Characterization of a new efflux pump, MexGHI-OpmD, from Pseudomonas aeruginosa that confers resistance to vanadium.




  
PubMed:
        12177331


MedLine:
        




    
Source:
Microbiology. 2002 Aug;148(Pt 8):2371-81.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12177331









           
Homologs By Global Alignment 

           

       



     
Gene ID:919
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1629
                           PA4208_tr
                           translation of PA4208
                           487
                           99.38
                           99.58
                           0
                           2427.0
     

     
     
58724
                           gb|AAG07595.1|AE004837_6
                           (AE004837) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           487
                           99.38
                           99.58
                           0
                           2427.0
     

     
     
58725
                           dbj|BAC24097.1|
                           (AB085582) putative outer membrane efflux protein [Pseudomonas aeruginosa]
                           487
                           99.38
                           99.58
                           0
                           2427.0
     

     
     
58726
                           emb|CAE35828.1|
                           (BX640448) outer membrane component of multidrug efflux system [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           491
                           46.84
                           62.93
                           8
                           1051.0
     

     
     
58727
                           emb|CAE38689.1|
                           (BX640433) outer membrane component of multidrug efflux system [Bordetella parapertussis]
                           491
                           46.63
                           62.93
                           8
                           1049.0
     

     






      

          
GC ORFID: 43921How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4208Glimmer Score: 

          
Start: 4137628Stop: 4139091

          
Length: 1464


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4208 translation of PA4208Homolog Bit Score 939.0

          
Other Homologs:  t_PA4208 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCGCTCCTACCCGAACCTTTCGCGCCTGGCGCTGGCCCTGGCGGTCGGCACCGGCCTGGCCGCCTGC 
AGCGTCGGCCCCGACTACCAGCGTCCGCAGTCGCCGCCGCCACGCGTCGCCAGCGAGCACCTCGACGAGTTC 
TCCGGCGAGCGGCGGGAAGCGCCCTGGTGGAGCTTCTTCGACGATCCGCAACTGGTGCGCCTGGTCGACCAG 
GCGCTGGCGCGCAACCACGACATCCGCGAGGCCCGCGCCAACCTGCGCAGCGCCCGCGCGCTGTTCGACGAC 
CGCTGGCTCGACCAGTTGCCGCAGGTCACCAGCCAGGCCGGCTACAGCCGCAGCATCGAACAACAGCTGGAC 
TACGACGGCGAGCCGCGCCGGCGCCTGGCGGAGAGCTACCGCGCCGGCTTCGACGCGCAGTGGGAAATCGAC 
CTGTTCGGCCGCCTCGGCCGACTTTCCGACGCCGCCCTGGCCCGCGCCGAAGCGGCCGACGCCGACCTCCGG 
CTGGTACGCCTGAGCATCGCCGCCGACACCGCCCGCGCCTACTTCGAGATCCAGGGCTACCAGCGCCGGCTG 
GACGTGGCGCGCGCCCAGGTGCGCAGTTGGCGCGACACCCTGGAGCTGACCCGCAGCAGCCTGCAACTGGGC 
AGCGGCCTGCCGGAGGACGTGGAGAACGCCCAGGCCAACCTGCTGCGCAGCGAAGCGGCGATTCCGCCACTG 
ACGACCGCGCTGGAGAGCGCCCGCTATCGCCTCGACGTGCTGCGCGGCGAGGCACCGGGCAGCGGCGCGCCG 
ATCCTCGACGGTGGCGGCGCCGCGCCATTGGCGAAGAACCTGCCGCTGGGCGACGTCGACCGCCTGATCCTC 
CAGCGCCCCGACGTAGTTAGCGCCGAGCGGCAACTGGCAGCGAGCACCGAAGACGTCGGCGCGGCCACCGCC 
GAACTCTATCCGCGCCTCGACCTGGGCGGCTTCATCGGTTTCTTCGCCCTGCGCAGCGGCGACCTCGGCAGC 
GCCTCGCGCGCCTTCGAACTGGCGCCCAGCGTCAGTTGGCCGGCGTTCCGCCTGGGCAACGTGCGGGCCCGC 
CTGCGCGCCGTCGAGGCGCAGTCCGACGCCGCGCTGGCGCGCTACCAGCGCTCCCTGCTGCTGGCCCAGGAG 
GACGTCGGCAACGCGCTCAACCAACTGGCCGAACACCAGCGTCGGCTGGTCGCCCTGTTCCAGTCCGCGACC 
CATGGCGCGAACGCCCTGGAGATCGCCAACGAACGCTACCGCGCCGGCGCCGGCAGCTACCTGGCGGTGCTG 
GAGAACCAGCGCGCGCTGTACCAGATCCGCGAGGAACTGGCGCAGGCGGAGACCGCCTCGTTCGTCAACGTC 
ATCGCCCTCTACAAGGCGCTCGGCTGGGGCAGCGGCGACCTGGCGCCGGGCGCCGGCCAACTGGCCGCCGGC 
GAAACCGCCGGGGCCAGCCGTTGA