ViewGene

Locus Name:
GeneID:
Location:

GeneID:918
TrivialName: PA14_18520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18520
PAO1 Ortholog Locus:PA3543
Sequence Length:1428
Protein Length:475
Start: 1591108
Stop: 1589681
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06931.1|AE004775_2 (AE004775) alginate biosynthetic protein AlgK precursor [Pseudomonas aeruginosa PAO1]
Identities = 474/475 (99%), Positives = 474/475 (99%)
Sequence:
ATGAAGATGCCCATCCTCCCTCCCCTGCCCCTGGCGTCCCGGCACCTGCTGCTGGCCTCGGCCATCGCCCTG
GCCGCCGGCTGCGCCGGGCTGCCCGACCAGCGCCTGGCCCAGGAGGCCCTGGAGCGCGGCGACCTCGCCACC
GCCCAGAGCAACTACCAGGCCCTGGCCGCAATGGGTTACGCCGACGCCCAGGTCGGCCTCGCCGACATGCAG
GTCGCCAGCGGCGACAGCGCCCAGCAGGCCAAGGCCGAAAAGCTCTACCGCGAGGCCGCGCAGACCTCGCCG
CGGGCCCGCGCGCGCCTTGGCAAGTGGCTGGCTGCCAAGCCCGGCGCCAGCGACGCCGAGCACCGCGAGGCC
GAGCGCCTGCTCAGCCAGGCCTTCGAACAGGGCGAGGACAGTGCCCTGGTGCCGCTCATCGTGCTCTACCTG
CAATACCCGCAGTCCTGGCCGGAAATCGACCCGCAGCAGCGCATCGACCAGTGGCGCGCGCGCGGACTGCCG
CAGGCCGACCTGGCGCAGATCATCCTCTACCGCACCCAGGGCACCTACGCCCAGCACCTGGGCGAGATCGAG
CAGGTCTGCCAGCGCTGGCTGCGGCGCATGGACGTGTGCTGGTACGAACTGGCCACGGTCTACCAGATGCAG
GGCAACGCGGAAAAGCAGAAGGCCCTGCTCGAACAGCTGCGCGCCGCCTACAAGGCCGGCCGGGTGCCCGGC
GAGCGGGTCGACTCGGTGGCCGGGGTGCTCGCCGACGGCGAACTCGGCCAGCCCGACCCGCAGACCGCCCAG
GCGCTGCTGGAAGAGATCGCGCCGAGCTACCCCGCGGCCTGGGTCAGCCTGGCCAAGCTGCTCTACGACTAT
CCCGACCAGGGCGACCTGGAAAAGATGCTCGGCTACCTGAAGAACGCCCAGGACGCCGCCCAGCCACGCGCC
GAACTGCTCCTCGGGCGCCTCTACTACGACGGCAAGTGGGCGCCGCAGGACCCGCGCAAGGCCGAGCGGCAC
CTGCTCAAGGCCGCCGCCAGCGAACCCCAGGCCAACTACTACCTGGGGCAGATCTACCGCCGCGGCTTCCTC
GGCAAGGTCTATCCGCAGAAGGCCGTCGACCACCTGATCCTCGCCGCCCGCGCCGGCCAGGCCAGCGCCGAC
ATGGCCCTGGCCCAGCTCTGGTCGCAGGGCCGCGGCATCCAGCCGAACCGGGTCAACGCCTACGTCTTCGGC
CAGCTCGCCGTGCAGCAGCAGGTACCGCAGGCCAGCGACCTGCTCGGGCAGATCGAAGCGCAACTGCCGCCG
GCCGAACGCAGCCAGGCGCAGCAATTGCTCAAGCGCGAACAACAGAGCCGCGGCAACAACTGGCAGGCCACC
GTCAGCCTGCTGCAGAGCCAGGACTCGCCGATCAACGAAGAAGAGCCAGAAAGCCTATGA
Translation:
MKMPILPPLPLASRHLLLASAIALAAGCAGLPDQRLAQEALERGDLATAQSNYQALAAMGYADAQVGLADMQ
VASGDSAQQAKAEKLYREAAQTSPRARARLGKWLAAKPGASDAEHREAERLLSQAFEQGEDSALVPLIVLYL
QYPQSWPEIDPQQRIDQWRARGLPQADLAQIILYRTQGTYAQHLGEIEQVCQRWLRRMDVCWYELATVYQMQ
GNAEKQKALLEQLRAAYKAGRVPGERVDSVAGVLADGELGQPDPQTAQALLEEIAPSYPAAWVSLAKLLYDY
PDQGDLEKMLGYLKNAQDAAQPRAELLLGRLYYDGKWAPQDPRKAERHLLKAAASEPQANYYLGQIYRRGFL
GKVYPQKAVDHLILAARAGQASADMALAQLWSQGRGIQPNRVNAYVFGQLAVQQQVPQASDLLGQIEAQLPP
AERSQAQQLLKREQQSRGNNWQATVSLLQSQDSPINEEEPESL*
AnnotationID:927GeneID:918
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 16:04:00
Gene Name:algK
Confidence Code:1
GeneProduct:alginate biosynthetic protein AlgK precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Adaptation, protection; Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54765.1| (AE016860) alginate biosynthesis protein AlgK [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 470

 Score =  540 bits (1390), Expect = e-152
 Identities = 272/465 (58%), Positives = 346/465 (74%), Gaps = 1/465 (0%)

>gb|AAN66909.1|AE016319_5 (AE016778) alginate biosynthesis regulator AlgK [Pseudomonas putida
           KT2440]
          Length = 484

 Score =  521 bits (1343), Expect = e-147
 Identities = 266/455 (58%), Positives = 350/455 (76%), Gaps = 2/455 (0%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:1839
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18981
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32022
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:918_cdd.html
URL:
ReferenceID:34129
Author/Investigator(s): Aarons SJ, Sutherland IW, Chakrabarty AM, Gallagher MP.
Title: A novel gene, algK, from the alginate biosynthesis cluster of Pseudomonas aeruginosa.
PubMed: 9043140
MedLine:
Source:
Microbiology. 1997 Feb;143 ( Pt 2):641-52.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9043140
Homologs By Global Alignment
Gene ID:918

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1628 PA3543_tr translation of PA3543 475 99.78 99.78 0 2426.0
58718 gb|AAG06931.1|AE004775_2 (AE004775) alginate biosynthetic protein AlgK precursor [Pseudomonas aeruginosa PAO1] 475 99.78 99.78 0 2426.0
58719 emb|CAA67592.1| (X99206) algK [Pseudomonas aeruginosa] 475 99.78 99.78 0 2426.0
58720 gb|AAC38141.1| (AF039535) AlgK precursor [Pseudomonas aeruginosa] 475 99.36 99.36 0 2417.0
58721 gb|AAO54765.1| (AE016860) alginate biosynthesis protein AlgK [Pseudomonas syringae pv. tomato str. DC3000] 476 57.56 73.73 7 1388.0
GC ORFID: 43920How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3543Glimmer Score:
Start: 3362827Stop: 3364254
Length: 1428
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3543 translation of PA3543Homolog Bit Score 939.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4994 (ORF: BLASTX 540.0), t_PA3543 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGATGCCCATCCTCCCTCCCCTGCCCCTGGCGTCCCGGCACCTGCTGCTGGCCTCGGCCATCGCCCTG
GCCGCCGGCTGCGCCGGGCTGCCCGACCAGCGCCTGGCCCAGGAGGCCCTGGAGCGCGGCGACCTCGCCACC
GCCCAGAGCAACTACCAGGCCCTGGCCGCAATGGGTTACGCCGACGCCCAGGTCGGCCTCGCCGACATGCAG
GTCGCCAGCGGCGACAGCGCCCAGCAGGCCAAGGCCGAAAAGCTCTACCGCGAGGCCGCGCAGACCTCGCCG
CGGGCCCGCGCGCGCCTTGGCAAGTGGCTGGCTGCCAAGCCCGGCGCCAGCGACGCCGAGCACCGCGAGGCC
GAGCGCCTGCTCAGCCAGGCCTTCGAACAGGGCGAGGACAGTGCCCTGGTGCCGCTCATCGTGCTCTACCTG
CAATACCCGCAGTCCTGGCCGGAAATCGACCCGCAGCAGCGCATCGACCAGTGGCGCGCGCGCGGACTGCCG
CAGGCCGACCTGGCGCAGATCATCCTCTACCGCACCCAGGGCACCTACGCCCAGCACCTGGGCGAGATCGAG
CAGGTCTGCCAGCGCTGGCTGCGGCGCATGGACGTGTGCTGGTACGAACTGGCCACGGTCTACCAGATGCAG
GGCAACGCGGAAAAGCAGAAGGCCCTGCTCGAACAGCTGCGCGCCGCCTACAAGGCCGGCCGGGTGCCCGGC
GAGCGGGTCGACTCGGTGGCCGGGGTGCTCGCCGACGGCGAACTCGGCCAGCCCGACCCGCAGACCGCCCAG
GCGCTGCTGGAAGAGATCGCGCCGAGCTACCCCGCGGCCTGGGTCAGCCTGGCCAAGCTGCTCTACGACTAT
CCCGACCAGGGCGACCTGGAAAAGATGCTCGGCTACCTGAAGAACGCCCAGGACGCCGCCCAGCCACGCGCC
GAACTGCTCCTCGGGCGCCTCTACTACGACGGCAAGTGGGCGCCGCAGGACCCGCGCAAGGCCGAGCGGCAC
CTGCTCAAGGCCGCCGCCAGCGAACCCCAGGCCAACTACTACCTGGGGCAGATCTACCGCCGCGGCTTCCTC
GGCAAGGTCTATCCGCAGAAGGCCGTCGACCACCTGATCCTCGCCGCCCGCGCCGGCCAGGCCAGCGCCGAC
ATGGCCCTGGCCCAGCTCTGGTCGCAGGGCCGCGGCATCCAGCCGAACCGGGTCAACGCCTACGTCTTCGGC
CAGCTCGCCGTGCAGCAGCAGGTACCGCAGGCCAGCGACCTGCTCGGGCAGATCGAAGCGCAACTGCCGCCG
GCCGAACGCAGCCAGGCGCAGCAATTGCTCAAGCGCGAACAACAGAGCCGCGGCAACAACTGGCAGGCCACC
GTCAGCCTGCTGCAGAGCCAGGACTCGCCGATCAACGAAGAAGAGCCAGAAAGCCTATGA