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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG04750.1|AE004565_9 (AE004565) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 475/477 (99%), Positives = 476/477 (99%)
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Sequence:
GTGAACAGCCCCGCCCTGCCCCTTTCCCGTGGCTTGCGCATCCGCGCCGAACTCAAGGAACTGCTGACCCTC
GCCGCGCCGATCATGATCGCGCAACTGGCGACCACCGCCATGGGCTTCGTCGATGCGGTGATGGCCGGGCGC
GCCAGTCCGCACGACCTGGCAGCGGTGGCGCTGGGCAACTCGATCTGGATCCCGATGTTCCTGCTGATGACC
GGCACCCTGCTCGCCACCACGGCCAAGGTCGCCCAGCGCTACGGCGCCGGCGACCAGCCCGGCACCGGGCCG
CTGGTGCGCCAGGCGCTGTGGCTGGCGCTGCTGATCGGACCGCTGTCGGGGGCGGTGCTGTGGTGGTTGTCG
GAGCCGATCCTCGGCTTGATGAAAGTGCGCCCGGAACTGATCGGGCCGAGCCTGCTGTACCTCAAGGGCATC
GCCCTGGGCTTCCCGGCGGCGGCGCTGTACCACGTACTACGCTGCTACACCAACGGCCTGGGACGGACCCGG
CCGAGCATGGTGCTGGGGATCGGCGGGCTGCTGCTGAACATCCCGATCAACTACGCGCTGATCTACGGCCAC
TTCGGCATGCCGAAGATGGGCGGCCCCGGCTGCGGCTGGGCCACCGGCTCGGTGATGTGGTTCATGTTCCTC
GGCATGCTGTTCTGGGTGAACAAGGCCTCGATCTACCGCGCCAGCCAGTTGTTCTCGCGCTGGGAGTGGCCG
GATCGCGCGACCATCGGCCCGCTGGTGGCGGTCGGCCTGCCGATCGGCATCGCGGTGTTCGCCGAGTCGAGC
ATCTTCTCGGTGATCGCCCTGCTGATCGGCGGGCTCGACGAGAACGTGGTGGCCGGCCACCAGATCGCCCTG
AACTTCAGCGCGCTGGTGTTCATGATTCCCTATTCGCTGGGGATGGCGGTGACCGTGCGGGTCGGCCACAAC
CTCGGCGCCGGCCTGCCGCGCGACGCGCGCTTCGCCGCCGGCGTGGGGATGGCCGCGGCGCTGGGCTACGCC
TGCGTCTCGGCGAGCCTGATGCTGTTGCTGCGCGAGCAGATCGCCGCGATGTATTCGCCGGACCCGGCGGTG
ATCGCCATCGCCGCCTCGCTGATCGTGTTCTCCGCGCTGTTCCAGTTCTCCGACGCCCTGCAGGTCACCGCC
GCCGGGGCCCTGCGCGGCTACCAGGACACCCGGGTGACGATGATCATGACCCTGTTCGCCTACTGGGGCATC
GGCCTGCCGGTGGGCTACAGCCTCGGCCTCACCGACTGGTTCCAGGAACCCACCGGACCGCGCGGCCTGTGG
CAAGGCCTGGTGGTGGGCCTGACCGGCGCGGCGATCATGCTCTGCATCCGCCTGGCGCGCAGCGCGCGGCGC
TTCATCCGCCAGCACGAGCGCCTGCAGCGGGAGGACGCGGCGGCCGCCTCAGTCCTTGGCCGGTAG |
Translation:
MNSPALPLSRGLRIRAELKELLTLAAPIMIAQLATTAMGFVDAVMAGRASPHDLAAVALGNSIWIPMFLLMT
GTLLATTAKVAQRYGAGDQPGTGPLVRQALWLALLIGPLSGAVLWWLSEPILGLMKVRPELIGPSLLYLKGI
ALGFPAAALYHVLRCYTNGLGRTRPSMVLGIGGLLLNIPINYALIYGHFGMPKMGGPGCGWATGSVMWFMFL
GMLFWVNKASIYRASQLFSRWEWPDRATIGPLVAVGLPIGIAVFAESSIFSVIALLIGGLDENVVAGHQIAL
NFSALVFMIPYSLGMAVTVRVGHNLGAGLPRDARFAAGVGMAAALGYACVSASLMLLLREQIAAMYSPDPAV
IAIAASLIVFSALFQFSDALQVTAAGALRGYQDTRVTMIMTLFAYWGIGLPVGYSLGLTDWFQEPTGPRGLW
QGLVVGLTGAAIMLCIRLARSARRFIRQHERLQREDAAAASVLGR* |
AnnotationID:925 | GeneID:916 |
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Modification Date/Time: |
2005-02-23 20:08:13 |
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GeneProduct: | putative multidrug efflux transporter |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (3) Antibiotic resistance and susceptibility |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | transport of small molecules |
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Homology: | >gb|AAN55335.1|AE015671_2 (AE015671) MATE efflux family protein [Shewanella oneidensis MR-1]
Length = 459
Score = 387 bits (995), Expect = e-107
Identities = 206/446 (46%), Positives = 286/446 (64%), Gaps = 8/446 (1%)
>gb|AAN80517.1|AE016761_92 (AE016761) Multidrug resistance protein norM [Escherichia coli
CFT073]
Length = 457
Score = 384 bits (986), Expect = e-106
Identities = 201/435 (46%), Positives = 277/435 (63%)
>gb|AAB47941.1| (U68703) hypothetical protein YdhE [Escherichia coli]
Length = 457
Score = 381 bits (978), Expect = e-105
Identities = 200/435 (45%), Positives = 276/435 (63%)
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Structural Features: | COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]
CD-Length = 455 residues, 97.4% aligned
Score = 290 bits (743), Expect = 3e-79
Identities = 162/451 (35%), Positives = 236/451 (52%), Gaps = 8/451 (1%)
pfam01554, MatE, MatE. The MatE domain
CD-Length = 162 residues, 99.4% aligned
Score = 107 bits (269), Expect = 3e-24
Identities = 58/161 (36%), Positives = 90/161 (55%) |
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Comment: | other possible gene name: ydhE |
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