ViewGene

Locus Name:
GeneID:
Location:

GeneID:916
TrivialName: PA14_46680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46680
PAO1 Ortholog Locus:PA1361
Sequence Length:1434
Protein Length:477
Start: 4160669
Stop: 4162102
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04750.1|AE004565_9 (AE004565) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 475/477 (99%), Positives = 476/477 (99%)
Sequence:
GTGAACAGCCCCGCCCTGCCCCTTTCCCGTGGCTTGCGCATCCGCGCCGAACTCAAGGAACTGCTGACCCTC
GCCGCGCCGATCATGATCGCGCAACTGGCGACCACCGCCATGGGCTTCGTCGATGCGGTGATGGCCGGGCGC
GCCAGTCCGCACGACCTGGCAGCGGTGGCGCTGGGCAACTCGATCTGGATCCCGATGTTCCTGCTGATGACC
GGCACCCTGCTCGCCACCACGGCCAAGGTCGCCCAGCGCTACGGCGCCGGCGACCAGCCCGGCACCGGGCCG
CTGGTGCGCCAGGCGCTGTGGCTGGCGCTGCTGATCGGACCGCTGTCGGGGGCGGTGCTGTGGTGGTTGTCG
GAGCCGATCCTCGGCTTGATGAAAGTGCGCCCGGAACTGATCGGGCCGAGCCTGCTGTACCTCAAGGGCATC
GCCCTGGGCTTCCCGGCGGCGGCGCTGTACCACGTACTACGCTGCTACACCAACGGCCTGGGACGGACCCGG
CCGAGCATGGTGCTGGGGATCGGCGGGCTGCTGCTGAACATCCCGATCAACTACGCGCTGATCTACGGCCAC
TTCGGCATGCCGAAGATGGGCGGCCCCGGCTGCGGCTGGGCCACCGGCTCGGTGATGTGGTTCATGTTCCTC
GGCATGCTGTTCTGGGTGAACAAGGCCTCGATCTACCGCGCCAGCCAGTTGTTCTCGCGCTGGGAGTGGCCG
GATCGCGCGACCATCGGCCCGCTGGTGGCGGTCGGCCTGCCGATCGGCATCGCGGTGTTCGCCGAGTCGAGC
ATCTTCTCGGTGATCGCCCTGCTGATCGGCGGGCTCGACGAGAACGTGGTGGCCGGCCACCAGATCGCCCTG
AACTTCAGCGCGCTGGTGTTCATGATTCCCTATTCGCTGGGGATGGCGGTGACCGTGCGGGTCGGCCACAAC
CTCGGCGCCGGCCTGCCGCGCGACGCGCGCTTCGCCGCCGGCGTGGGGATGGCCGCGGCGCTGGGCTACGCC
TGCGTCTCGGCGAGCCTGATGCTGTTGCTGCGCGAGCAGATCGCCGCGATGTATTCGCCGGACCCGGCGGTG
ATCGCCATCGCCGCCTCGCTGATCGTGTTCTCCGCGCTGTTCCAGTTCTCCGACGCCCTGCAGGTCACCGCC
GCCGGGGCCCTGCGCGGCTACCAGGACACCCGGGTGACGATGATCATGACCCTGTTCGCCTACTGGGGCATC
GGCCTGCCGGTGGGCTACAGCCTCGGCCTCACCGACTGGTTCCAGGAACCCACCGGACCGCGCGGCCTGTGG
CAAGGCCTGGTGGTGGGCCTGACCGGCGCGGCGATCATGCTCTGCATCCGCCTGGCGCGCAGCGCGCGGCGC
TTCATCCGCCAGCACGAGCGCCTGCAGCGGGAGGACGCGGCGGCCGCCTCAGTCCTTGGCCGGTAG
Translation:
MNSPALPLSRGLRIRAELKELLTLAAPIMIAQLATTAMGFVDAVMAGRASPHDLAAVALGNSIWIPMFLLMT
GTLLATTAKVAQRYGAGDQPGTGPLVRQALWLALLIGPLSGAVLWWLSEPILGLMKVRPELIGPSLLYLKGI
ALGFPAAALYHVLRCYTNGLGRTRPSMVLGIGGLLLNIPINYALIYGHFGMPKMGGPGCGWATGSVMWFMFL
GMLFWVNKASIYRASQLFSRWEWPDRATIGPLVAVGLPIGIAVFAESSIFSVIALLIGGLDENVVAGHQIAL
NFSALVFMIPYSLGMAVTVRVGHNLGAGLPRDARFAAGVGMAAALGYACVSASLMLLLREQIAAMYSPDPAV
IAIAASLIVFSALFQFSDALQVTAAGALRGYQDTRVTMIMTLFAYWGIGLPVGYSLGLTDWFQEPTGPRGLW
QGLVVGLTGAAIMLCIRLARSARRFIRQHERLQREDAAAASVLGR*
AnnotationID:925GeneID:916
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 20:08:13
Gene Name:
Confidence Code:3
GeneProduct:putative multidrug efflux transporter
Cell Localization:()
Synonyms:norM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0534,pfam01554
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN55335.1|AE015671_2 (AE015671) MATE efflux family protein [Shewanella oneidensis MR-1]
          Length = 459

 Score =  387 bits (995), Expect = e-107
 Identities = 206/446 (46%), Positives = 286/446 (64%), Gaps = 8/446 (1%)

>gb|AAN80517.1|AE016761_92 (AE016761) Multidrug resistance protein norM [Escherichia coli
           CFT073]
          Length = 457

 Score =  384 bits (986), Expect = e-106
 Identities = 201/435 (46%), Positives = 277/435 (63%)

>gb|AAB47941.1| (U68703) hypothetical protein YdhE [Escherichia coli]
          Length = 457

 Score =  381 bits (978), Expect = e-105
 Identities = 200/435 (45%), Positives = 276/435 (63%)

Structural Features:
COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]
CD-Length = 455 residues,  97.4% aligned
Score =  290 bits (743), Expect = 3e-79
Identities = 162/451 (35%), Positives = 236/451 (52%), Gaps = 8/451 (1%)

pfam01554, MatE, MatE. The MatE domain
CD-Length = 162 residues,  99.4% aligned
Score =  107 bits (269), Expect = 3e-24
Identities = 58/161 (36%), Positives = 90/161 (55%)
Genomic Context:
Comment:
other possible gene name: ydhE
ReferenceID:14259
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18977
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37408
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:916_cdd.html
URL:
Homologs By Global Alignment
Gene ID:916

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1626 PA1361_tr translation of PA1361 477 99.58 99.79 0 2426.0
58689 gb|AAG04750.1|AE004565_9 (AE004565) probable transporter [Pseudomonas aeruginosa PAO1] 477 99.37 99.79 0 2423.0
58692 gb|AAN80517.1|AE016761_92 (AE016761) Multidrug resistance protein norM [Escherichia coli CFT073] 480 43.54 60.00 26 980.0
58695 dbj|BAA15430.1| (D90809) ORF_ID:o319#7~similar to [SwissProt Accession Number P37340] [Escherichia coli] 480 43.54 60.00 26 978.0
58694 dbj|BAA15439.1| (D90810) ORF_ID:o319#7~similar to [SwissProt Accession Number P37340] [Escherichia coli] 480 43.54 60.00 26 978.0
GC ORFID: 43918How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1361Glimmer Score:
Start: 793240Stop: 791807
Length: 1434
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1361 translation of PA1361Homolog Bit Score 939.0
Other Homologs: t_PA1361 (ORF: GLIMMER)
GC ORF Sequence
GTGAACAGCCCCGCCCTGCCCCTTTCCCGTGGCTTGCGCATCCGCGCCGAACTCAAGGAACTGCTGACCCTC
GCCGCGCCGATCATGATCGCGCAACTGGCGACCACCGCCATGGGCTTCGTCGATGCGGTGATGGCCGGGCGC
GCCAGTCCGCACGACCTGGCAGCGGTGGCGCTGGGCAACTCGATCTGGATCCCGATGTTCCTGCTGATGACC
GGCACCCTGCTCGCCACCACGGCCAAGGTCGCCCAGCGCTACGGCGCCGGCGACCAGCCCGGCACCGGGCCG
CTGGTGCGCCAGGCGCTGTGGCTGGCGCTGCTGATCGGACCGCTGTCGGGGGCGGTGCTGTGGTGGTTGTCG
GAGCCGATCCTCGGCTTGATGAAAGTGCGCCCGGAACTGATCGGGCCGAGCCTGCTGTACCTCAAGGGCATC
GCCCTGGGCTTCCCGGCGGCGGCGCTGTACCACGTACTACGCTGCTACACCAACGGCCTGGGACGGACCCGG
CCGAGCATGGTGCTGGGGATCGGCGGGCTGCTGCTGAACATCCCGATCAACTACGCGCTGATCTACGGCCAC
TTCGGCATGCCGAAGATGGGCGGCCCCGGCTGCGGCTGGGCCACCGGCTCGGTGATGTGGTTCATGTTCCTC
GGCATGCTGTTCTGGGTGAACAAGGCCTCGATCTACCGCGCCAGCCAGTTGTTCTCGCGCTGGGAGTGGCCG
GATCGCGCGACCATCGGCCCGCTGGTGGCGGTCGGCCTGCCGATCGGCATCGCGGTGTTCGCCGAGTCGAGC
ATCTTCTCGGTGATCGCCCTGCTGATCGGCGGGCTCGACGAGAACGTGGTGGCCGGCCACCAGATCGCCCTG
AACTTCAGCGCGCTGGTGTTCATGATTCCCTATTCGCTGGGGATGGCGGTGACCGTGCGGGTCGGCCACAAC
CTCGGCGCCGGCCTGCCGCGCGACGCGCGCTTCGCCGCCGGCGTGGGGATGGCCGCGGCGCTGGGCTACGCC
TGCGTCTCGGCGAGCCTGATGCTGTTGCTGCGCGAGCAGATCGCCGCGATGTATTCGCCGGACCCGGCGGTG
ATCGCCATCGCCGCCTCGCTGATCGTGTTCTCCGCGCTGTTCCAGTTCTCCGACGCCCTGCAGGTCACCGCC
GCCGGGGCCCTGCGCGGCTACCAGGACACCCGGGTGACGATGATCATGACCCTGTTCGCCTACTGGGGCATC
GGCCTGCCGGTGGGCTACAGCCTCGGCCTCACCGACTGGTTCCAGGAACCCACCGGACCGCGCGGCCTGTGG
CAAGGCCTGGTGGTGGGCCTGACCGGCGCGGCGATCATGCTCTGCATCCGCCTGGCGCGCAGCGCGCGGCGC
TTCATCCGCCAGCACGAGCGCCTGCAGCGGGAGGACGCGGCGGCCGCCTCAGTCCTTGGCCGGTAG