ViewGene
Locus Name:
GeneID:
Location:

GeneID:912
TrivialName: PA14_11030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11030
PAO1 Ortholog Locus:PA4088
Sequence Length:1386
Protein Length:461
Start: 955508
Stop: 954123
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07475.1|AE004825_4 (AE004825) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 457/461 (99%), Positives = 458/461 (99%)
Sequence:
ATGGACACCACCTTCGGCCTCGACCTGGCCCGCGTCGAAGCGCTGTTCAAGCGCGAGCTGCGACGCTTCGAC
GAACTGCATCCGCGCTCCGCCCAGGCCTACCGGGAAAACCGCCGCCACTGGCTGTACGGCGCACCGTTGCAC
TGGATGCAACAGTGGCCGGGCAACTGCCCGCTGCTGGTGAAAGAGGCCCAGGGCGCGCGCGTCACCGACATC
GACGGCCAGCAGTACGTCGACTTCGCCCTCGGCGATAGCGGCGCCATGTTCGGCCACGCCCAACCGGCGGTG
GCCGACGCCATCGCCCGCCAGGCGCGGCGCGGCTCGACCCTGATGCTGCCGACCGAGGACAGCCTGTGGGTC
GGCGCCGAACTGGCGCGGCGCTTCGGCCTGCCCTATTGGCAGGTGACCACCTCGGCCACCGACGCCAACCGT
TTCGTCCTGCGCCTGTGCCGGATGCTCAGCGGACGTGACAAGGTGGTGGTGTTCAACTGCAACTACCACGGC
AGCGTCGACGAATCGCAGGTGGAATTCGACGCCGCCGGGCGCATGGTTCCGCGCGCGGGCGTTCACCCCAAT
GGCGTACGCCACGACGCCACCACCCGCCTGGTGGAGTTCAACGACCTCGACGCGCTGGAGGCCGCCCTCGCC
CATGGCGACGTCGCCGCGGTGCTCACCGAACCCTTCATGACCAACGTCGGCATGGTCCCGCCGGCCGAAGGC
TTCCACGCCGGCCTGCGCGAACTGACCCGCCGCCACGACGTGGCGCTGATCATCGACGAGACCCACACCATC
TCCTGCGGTCCCGCCGGCTATAGCGGCGCGCATGGCCTCGAGCCGGACTTCTTCGTCCTCGGCAAATGCATC
GCCGGCGGCATTCCCAGCGCCGTCTGGGGATGCAGCCAGGCGCAGGCGGAGCGGATCTGGGCGGTACTGCCG
CACTTCCGACCGGGGCAGGCGATCAACCATTTCGGCTTTGGCGGCACCCTGGCCGGCAACGCGCTGCAACTG
GCGGCGATGCGCGCGACCTTCGCCGAAGTGATGACGGAGGACGCCTATCGGCATATGTTCCAGCTCGCCGCG
CAGCTCGAGGCGGGCGTCCGCGCGACGCTCGAGGAACTGCGCCTGCCCTGGCACGTGACGCGCATCGGCGCG
CGCGTCGAGTACCTGTTCATGACCCACGCCCCGCGCAACGGCGGCGAGGCCCACCACGCACGCAACGGCCTG
GTCGAGGCCTGCCTGCACCTCTACCTGCTCAACCGCGGCGTGCTCTTGACGCCATTCCACAACATGGCGCTG
ACCTGCCCGGCGACCCGCGCGGAGGACGTCGAACTGCACGACCGCCTGCTCCGCGATTGCCTGGGCGAACTG
CTGGAGCGCCCATCGTGA
Translation:
MDTTFGLDLARVEALFKRELRRFDELHPRSAQAYRENRRHWLYGAPLHWMQQWPGNCPLLVKEAQGARVTDI
DGQQYVDFALGDSGAMFGHAQPAVADAIARQARRGSTLMLPTEDSLWVGAELARRFGLPYWQVTTSATDANR
FVLRLCRMLSGRDKVVVFNCNYHGSVDESQVEFDAAGRMVPRAGVHPNGVRHDATTRLVEFNDLDALEAALA
HGDVAAVLTEPFMTNVGMVPPAEGFHAGLRELTRRHDVALIIDETHTISCGPAGYSGAHGLEPDFFVLGKCI
AGGIPSAVWGCSQAQAERIWAVLPHFRPGQAINHFGFGGTLAGNALQLAAMRATFAEVMTEDAYRHMFQLAA
QLEAGVRATLEELRLPWHVTRIGARVEYLFMTHAPRNGGEAHHARNGLVEACLHLYLLNRGVLLTPFHNMAL
TCPATRAEDVELHDRLLRDCLGELLERPS*
AnnotationID:921GeneID:912
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 09:09:58
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferase
Cell Localization:()
Synonyms:PA4088
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0001,pfam00202,COG4992,COG0160
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB51647.1| (AP003005) probable aminotransferase [Mesorhizobium loti]
          Length = 460

 Score =  405 bits (1041), Expect = e-112
 Identities = 217/437 (49%), Positives = 275/437 (62%), Gaps = 5/437 (1%)








 
Structural Features:
COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
CD-Length = 432 residues,  99.8% aligned
Score =  398 bits (1025), Expect = 6e-112
Identities = 140/442 (31%), Positives = 199/442 (45%), Gaps = 18/442 (4%)

pfam00202, Aminotran_3, Aminotransferase class-III.
CD-Length = 402 residues,  99.8% aligned
Score =  159 bits (404), Expect = 5e-40
Identities = 118/431 (27%), Positives = 174/431 (40%), Gaps = 57/431 (13%)

COG4992, ArgD, Ornithine/acetylornithine aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 404 residues,  77.7% aligned
Score =  141 bits (356), Expect = 2e-34
Identities = 97/344 (28%), Positives = 142/344 (41%), Gaps = 46/344 (13%)

COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases 
[Amino acid transport and metabolism]
CD-Length = 447 residues,  72.3% aligned
Score =  139 bits (352), Expect = 6e-34
Identities = 101/343 (29%), Positives = 146/343 (42%), Gaps = 46/343 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1827




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18969




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36834




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:912_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:912
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1621
                           PA4088_tr
                           translation of PA4088
                           461
                           99.13
                           99.34
                           0
                           2433.0
     

     
     
58525
                           gb|AAG07475.1|AE004825_4
                           (AE004825) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           461
                           99.13
                           99.34
                           0
                           2433.0
     

     
     
1622
                           PA5523_tr
                           translation of PA5523
                           473
                           49.89
                           60.04
                           35
                           1095.0
     

     
     
58526
                           gb|AAG08908.1|AE004964_11
                           (AE004964) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           473
                           49.89
                           60.04
                           35
                           1095.0
     

     
     
58527
                           gb|AAQ60487.1|
                           (AE016920) probable glutamate-1-semialdehyde aminotransferase [Chromobacterium violaceum ATCC 12472]
                           467
                           49.25
                           62.09
                           20
                           1082.0
     

     






      

          
GC ORFID: 43914How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4088Glimmer Score: 

          
Start: 3998429Stop: 3999814

          
Length: 1386


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4088 translation of PA4088Homolog Bit Score 941.0

          
Other Homologs:  t_PA5523 (ORF: BLASTX 421.0), t_PA4088 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACACCACCTTCGGCCTCGACCTGGCCCGCGTCGAAGCGCTGTTCAAGCGCGAGCTGCGACGCTTCGAC 
GAACTGCATCCGCGCTCCGCCCAGGCCTACCGGGAAAACCGCCGCCACTGGCTGTACGGCGCACCGTTGCAC 
TGGATGCAACAGTGGCCGGGCAACTGCCCGCTGCTGGTGAAAGAGGCCCAGGGCGCGCGCGTCACCGACATC 
GACGGCCAGCAGTACGTCGACTTCGCCCTCGGCGATAGCGGCGCCATGTTCGGCCACGCCCAACCGGCGGTG 
GCCGACGCCATCGCCCGCCAGGCGCGGCGCGGCTCGACCCTGATGCTGCCGACCGAGGACAGCCTGTGGGTC 
GGCGCCGAACTGGCGCGGCGCTTCGGCCTGCCCTATTGGCAGGTGACCACCTCGGCCACCGACGCCAACCGT 
TTCGTCCTGCGCCTGTGCCGGATGCTCAGCGGACGTGACAAGGTGGTGGTGTTCAACTGCAACTACCACGGC 
AGCGTCGACGAATCGCAGGTGGAATTCGACGCCGCCGGGCGCATGGTTCCGCGCGCGGGCGTTCACCCCAAT 
GGCGTACGCCACGACGCCACCACCCGCCTGGTGGAGTTCAACGACCTCGACGCGCTGGAGGCCGCCCTCGCC 
CATGGCGACGTCGCCGCGGTGCTCACCGAACCCTTCATGACCAACGTCGGCATGGTCCCGCCGGCCGAAGGC 
TTCCACGCCGGCCTGCGCGAACTGACCCGCCGCCACGACGTGGCGCTGATCATCGACGAGACCCACACCATC 
TCCTGCGGTCCCGCCGGCTATAGCGGCGCGCATGGCCTCGAGCCGGACTTCTTCGTCCTCGGCAAATGCATC 
GCCGGCGGCATTCCCAGCGCCGTCTGGGGATGCAGCCAGGCGCAGGCGGAGCGGATCTGGGCGGTACTGCCG 
CACTTCCGACCGGGGCAGGCGATCAACCATTTCGGCTTTGGCGGCACCCTGGCCGGCAACGCGCTGCAACTG 
GCGGCGATGCGCGCGACCTTCGCCGAAGTGATGACGGAGGACGCCTATCGGCATATGTTCCAGCTCGCCGCG 
CAGCTCGAGGCGGGCGTCCGCGCGACGCTCGAGGAACTGCGCCTGCCCTGGCACGTGACGCGCATCGGCGCG 
CGCGTCGAGTACCTGTTCATGACCCACGCCCCGCGCAACGGCGGCGAGGCCCACCACGCACGCAACGGCCTG 
GTCGAGGCCTGCCTGCACCTCTACCTGCTCAACCGCGGCGTGCTCTTGACGCCATTCCACAACATGGCGCTG 
ACCTGCCCGGCGACCCGCGCGGAGGACGTCGAACTGCACGACCGCCTGCTCCGCGATTGCCTGGGCGAACTG 
CTGGAGCGCCCATCGTGA