ViewGene

Locus Name:
GeneID:
Location:

GeneID: 911

TrivialName: PA14_05440

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_05440

PAO1 Ortholog Locus: PA0418

Sequence Length: 1416

Protein Length: 471

Start: 480734

Stop: 479319

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03807.1|AE004479_2 (AE004479) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 467/471 (99%), Positives = 468/471 (99%)

Sequence:

GTGAATACCGTTGCGCAACCCACTTCGCAACGGATCGCACGCATGGACACGCCCGTTACCTTCGATTGGAAG
ATCCGCCTGCCCGACGTGCTCGGCGTACTCCGCCGAGACTATGCCGGACGCTTCCCGCAGTTGGCCTCCGCC
GCACTGGAGACGCTGCTGGAGCGCCTGCGCGACGACCTTCCCGAGGATTTCCTGCCAGCCCTCGGCCAGGAG
CTGGAATCCCTCGGACTGGCGTTGGTGGAACGCCTGGACGAAGACGACAGCCTGAACCTGTACGTGGTCGGC
GCCACCCACAGCCAGCGCCTCCTCGATGCGCTCGCAGCGCAGGGCCACAACGCCCGCACGCTGCGCCAGGAA
AACGCCCCCGAGGGCGCCCGGGCGGCCCTCCCCGCCGCCGCGCCGGCCGGCCTGGCGCCGGCTTCGGCCTAC
ATCTGCCTCGAACACGCCGAGCACCTGGCGCCCGGCCTGGCCATCGCCCGCCTGCCGGGCGAGGACAGCCGC
AACCTGCTGGACCTGCGCCAATGGCCCAGGCTGCAACGCCTGCCCGATGGCGCGGAGGAAACCCAGGGCGCG
TTGCTCTGCCGGGCCAGTTCGGCGGACGGCCTGCACGCCTGGGTCAGGATGACCCGTTCGGGAAGCCCCTAC
GCCTGGCTGCATCGCTCCCGCGACCTCGCCTCGTTGACGCCCGAACTACCGCCCTTGCCGCTGCCGCCGGCG
CAGTCGTTGCGCCAACGCCGCACCCCGGAACTTGCCATCGGCCTGGCCGGGGACGACCTGCTCCTGGCCGAC
CGCGGCCTGTTCTTCCTCTATCCGGGCTTCGCCCAGGGCAACGACGAACCACGGTTGCTCTTCGAGGTGCCG
CAAGCGCGGCACTCCATCGAGAATCCGCCGGCGGTCTTCACCACTCCGGACCAGCGCGTCTGCCTGCTCTCC
CGCGGGCAGTTCTTCGAATGGCGCGAGGCACGCATCCAGCCCCTGCCGTTCCCCGTCGGCAAGGATCTGCCC
GCCGATCCGGCGCAACCGACCTCGGCGGCGCCCGGGACCATCGTCTGGCTGGAGCGTGAAACGCTCTGCGAA
GGCCGGCTCGACAGCGGCGAGATCCGCAGCCACTCGCTGGACGGCCTGGCCGAAGGTCCCTACCTGAAGCTC
CAGGCCCTGGACGGAGGCTGGCTGCTCCTGGCACCGTGGCTGGAACCGCATCGCTCGCGGGACCTCGCCCAG
CTCTGGCACCTCGAATCCGGCCGGGCGCTGCGCATCCGCTACGGCGAACTGGACCTGGAGGGCGGACTACAG
CACTGGGCGGAGCTGCCCGACGGCCGGATCGTCGTCGGCGACCATGCCCGGCATGTCGACCTCGGCAGGTTC
GAAAGCCTGCGCCAACGCCTGCTGCGGCGGCGCCTGGCGCCGGCCTGA

Translation:

MNTVAQPTSQRIARMDTPVTFDWKIRLPDVLGVLRRDYAGRFPQLASAALETLLERLRDDLPEDFLPALGQE
LESLGLALVERLDEDDSLNLYVVGATHSQRLLDALAAQGHNARTLRQENAPEGARAALPAAAPAGLAPASAY
ICLEHAEHLAPGLAIARLPGEDSRNLLDLRQWPRLQRLPDGAEETQGALLCRASSADGLHAWVRMTRSGSPY
AWLHRSRDLASLTPELPPLPLPPAQSLRQRRTPELAIGLAGDDLLLADRGLFFLYPGFAQGNDEPRLLFEVP
QARHSIENPPAVFTTPDQRVCLLSRGQFFEWREARIQPLPFPVGKDLPADPAQPTSAAPGTIVWLERETLCE
GRLDSGEIRSHSLDGLAEGPYLKLQALDGGWLLLAPWLEPHRSRDLAQLWHLESGRALRIRYGELDLEGGLQ
HWAELPDGRIVVGDHARHVDLGRFESLRQRLLRRRLAPA*

AnnotationID:920 GeneID:911

AnnotatorUID: diggins

Modification Date/Time: 2005-03-25 08:08:15

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA0418

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:14257

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18967

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:911

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1620 PA0418_tr translation of PA0418 471 99.15 99.36 0 2436.0

58524 gb|AAG03807.1|AE004479_2 (AE004479) hypothetical protein PA0418 [Pseudomonas aeruginosa PAO1] 471 98.93 99.36 0 2433.0

GC ORFID: `43913`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0418`	Glimmer Score:
Start: `6282076`	Stop: `6280661`
Length: `1416`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0418 translation of PA0418`	Homolog Bit Score `942.0`
Other Homologs: `t_PA0418 (ORF: GLIMMER)`
GC ORF Sequence
GTGAATACCGTTGCGCAACCCACTTCGCAACGGATCGCACGCATGGACACGCCCGTTACCTTCGATTGGAAG ATCCGCCTGCCCGACGTGCTCGGCGTACTCCGCCGAGACTATGCCGGACGCTTCCCGCAGTTGGCCTCCGCC GCACTGGAGACGCTGCTGGAGCGCCTGCGCGACGACCTTCCCGAGGATTTCCTGCCAGCCCTCGGCCAGGAG CTGGAATCCCTCGGACTGGCGTTGGTGGAACGCCTGGACGAAGACGACAGCCTGAACCTGTACGTGGTCGGC GCCACCCACAGCCAGCGCCTCCTCGATGCGCTCGCAGCGCAGGGCCACAACGCCCGCACGCTGCGCCAGGAA AACGCCCCCGAGGGCGCCCGGGCGGCCCTCCCCGCCGCCGCGCCGGCCGGCCTGGCGCCGGCTTCGGCCTAC ATCTGCCTCGAACACGCCGAGCACCTGGCGCCCGGCCTGGCCATCGCCCGCCTGCCGGGCGAGGACAGCCGC AACCTGCTGGACCTGCGCCAATGGCCCAGGCTGCAACGCCTGCCCGATGGCGCGGAGGAAACCCAGGGCGCG TTGCTCTGCCGGGCCAGTTCGGCGGACGGCCTGCACGCCTGGGTCAGGATGACCCGTTCGGGAAGCCCCTAC GCCTGGCTGCATCGCTCCCGCGACCTCGCCTCGTTGACGCCCGAACTACCGCCCTTGCCGCTGCCGCCGGCG CAGTCGTTGCGCCAACGCCGCACCCCGGAACTTGCCATCGGCCTGGCCGGGGACGACCTGCTCCTGGCCGAC CGCGGCCTGTTCTTCCTCTATCCGGGCTTCGCCCAGGGCAACGACGAACCACGGTTGCTCTTCGAGGTGCCG CAAGCGCGGCACTCCATCGAGAATCCGCCGGCGGTCTTCACCACTCCGGACCAGCGCGTCTGCCTGCTCTCC CGCGGGCAGTTCTTCGAATGGCGCGAGGCACGCATCCAGCCCCTGCCGTTCCCCGTCGGCAAGGATCTGCCC GCCGATCCGGCGCAACCGACCTCGGCGGCGCCCGGGACCATCGTCTGGCTGGAGCGTGAAACGCTCTGCGAA GGCCGGCTCGACAGCGGCGAGATCCGCAGCCACTCGCTGGACGGCCTGGCCGAAGGTCCCTACCTGAAGCTC CAGGCCCTGGACGGAGGCTGGCTGCTCCTGGCACCGTGGCTGGAACCGCATCGCTCGCGGGACCTCGCCCAG CTCTGGCACCTCGAATCCGGCCGGGCGCTGCGCATCCGCTACGGCGAACTGGACCTGGAGGGCGGACTACAG CACTGGGCGGAGCTGCCCGACGGCCGGATCGTCGTCGGCGACCATGCCCGGCATGTCGACCTCGGCAGGTTC GAAAGCCTGCGCCAACGCCTGCTGCGGCGGCGCCTGGCGCCGGCCTGA